Wall clock time and date at job start Mon Mar 30 2020 02:22:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09000 * 109.46438 * 2 1 4 4 C 1.50697 * 109.47157 * 119.99733 * 2 1 3 5 5 H 1.08001 * 120.00254 * 120.00169 * 4 2 1 6 6 C 1.37876 * 120.00011 * 300.00051 * 4 2 1 7 7 N 1.31512 * 120.00209 * 0.02562 * 6 4 2 8 8 Si 1.86805 * 120.00009 * 180.02562 * 6 4 2 9 9 H 1.48499 * 109.46775 * 0.02562 * 8 6 4 10 10 H 1.48496 * 109.46972 * 119.99907 * 8 6 4 11 11 H 1.48499 * 109.47121 * 240.00103 * 8 6 4 12 12 N 1.46898 * 109.47100 * 239.99841 * 2 1 3 13 13 C 1.46907 * 110.99806 * 84.99640 * 12 2 1 14 14 H 1.09000 * 113.22840 * 337.47420 * 13 12 2 15 15 C 1.52884 * 113.98730 * 204.99823 * 13 12 2 16 16 C 1.50760 * 89.82787 * 246.08914 * 15 13 12 17 17 C 1.38236 * 149.34418 * 180.02562 * 16 15 13 18 18 C 1.38172 * 120.12888 * 180.02562 * 17 16 15 19 19 C 1.38239 * 119.74541 * 359.94775 * 18 17 16 20 20 C 1.37972 * 120.18135 * 0.02562 * 19 18 17 21 21 C 1.38365 * 90.24726 * 359.96995 * 16 15 13 22 22 H 1.09001 * 109.46766 * 180.02562 * 1 2 3 23 23 H 1.08999 * 109.47118 * 299.99901 * 1 2 3 24 24 H 1.09000 * 109.47226 * 60.00260 * 1 2 3 25 25 H 0.97004 * 120.00292 * 179.97438 * 7 6 4 26 26 H 1.00895 * 110.99889 * 208.95170 * 12 2 1 27 27 H 1.09002 * 113.16581 * 130.83373 * 15 13 12 28 28 H 1.09001 * 113.16643 * 1.34329 * 15 13 12 29 29 H 1.08007 * 119.93382 * 359.95534 * 17 16 15 30 30 H 1.07997 * 120.12800 * 179.97438 * 18 17 16 31 31 H 1.08003 * 119.90738 * 179.97438 * 19 18 17 32 32 H 1.08004 * 119.84165 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 1.2305 5 1 2.6533 -1.5884 1.1315 6 6 1.6993 -0.2392 2.4827 7 7 0.9428 0.8297 2.6034 8 14 2.3226 -1.1194 4.0080 9 1 3.1485 -2.2854 3.6038 10 1 3.1473 -0.1855 4.8160 11 1 1.1679 -1.5864 4.8166 12 7 2.0197 -0.6925 -1.1994 13 6 2.0824 0.2226 -2.3469 14 1 1.4252 1.0861 -2.2446 15 6 1.9858 -0.4748 -3.7040 16 6 3.4034 -0.0637 -4.0111 17 6 4.4789 -0.0601 -4.8795 18 6 5.6538 0.5751 -4.5257 19 6 5.7493 1.2080 -3.3004 20 6 4.6764 1.2056 -2.4330 21 6 3.4923 0.5686 -2.7835 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 0.7081 1.1610 3.4844 26 1 2.9173 -1.1205 -1.0287 27 1 1.2531 -0.0182 -4.3695 28 1 1.8603 -1.5545 -3.6233 29 1 4.4010 -0.5557 -5.8360 30 1 6.4942 0.5776 -5.2040 31 1 6.6666 1.7050 -3.0211 32 1 4.7569 1.7021 -1.4772 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306749414.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:13 Heat of formation + Delta-G solvation = 42.906557 kcal Electronic energy + Delta-G solvation = -14020.696128 eV Core-core repulsion = 11753.377977 eV Total energy + Delta-G solvation = -2267.318152 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 217.116 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.43816 -37.72402 -35.87198 -33.66238 -31.61388 -29.78354 -27.82857 -27.21320 -24.57626 -22.55832 -21.87301 -20.85530 -18.59969 -17.57350 -17.00255 -16.20983 -16.11507 -15.69881 -15.16088 -14.75393 -14.20765 -13.85866 -13.63621 -13.39603 -13.07420 -12.92152 -12.85686 -12.57414 -12.27220 -12.24610 -12.11451 -11.65086 -11.20817 -10.90901 -10.61329 -9.81550 -9.61208 -9.06862 -8.16122 -6.30488 0.39873 0.47635 1.39481 1.41110 1.53120 2.39418 2.83667 3.12551 3.22446 3.52985 3.63017 3.97859 4.20756 4.27088 4.34654 4.70012 4.78499 4.79948 4.87020 5.00096 5.01672 5.07929 5.19261 5.20171 5.47838 5.50213 5.58580 5.65331 5.78498 5.90883 6.11632 6.19087 6.42986 6.69052 6.93062 7.39881 8.89887 Molecular weight = 217.12amu Principal moments of inertia in cm(-1) A = 0.038988 B = 0.007223 C = 0.006547 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 717.989472 B = 3875.697424 C = 4275.572789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C 0.216 3.784 3 H -0.031 1.031 4 C -0.539 4.539 5 H 0.057 0.943 6 C 0.014 3.986 7 N -0.917 5.917 8 Si 0.963 3.037 9 H -0.268 1.268 10 H -0.280 1.280 11 H -0.277 1.277 12 N -0.660 5.660 13 C 0.119 3.881 14 H 0.084 0.916 15 C -0.051 4.051 16 C -0.131 4.131 17 C -0.100 4.100 18 C -0.113 4.113 19 C -0.127 4.127 20 C -0.118 4.118 21 C -0.184 4.184 22 H 0.031 0.969 23 H 0.058 0.942 24 H 0.025 0.975 25 H 0.263 0.737 26 H 0.334 0.666 27 H 0.103 0.897 28 H 0.095 0.905 29 H 0.146 0.854 30 H 0.161 0.839 31 H 0.145 0.855 32 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.770 -0.619 -13.059 14.722 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.108 3.892 3 H -0.013 1.013 4 C -0.577 4.577 5 H 0.075 0.925 6 C -0.185 4.185 7 N -0.556 5.556 8 Si 0.788 3.212 9 H -0.192 1.192 10 H -0.206 1.206 11 H -0.203 1.203 12 N -0.288 5.288 13 C 0.007 3.993 14 H 0.102 0.898 15 C -0.089 4.089 16 C -0.132 4.132 17 C -0.118 4.118 18 C -0.131 4.131 19 C -0.145 4.145 20 C -0.137 4.137 21 C -0.186 4.186 22 H 0.050 0.950 23 H 0.076 0.924 24 H 0.044 0.956 25 H 0.073 0.927 26 H 0.152 0.848 27 H 0.122 0.878 28 H 0.113 0.887 29 H 0.163 0.837 30 H 0.178 0.822 31 H 0.162 0.838 32 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 6.053 -0.762 -13.061 14.415 hybrid contribution 0.896 0.512 1.505 1.825 sum 6.949 -0.249 -11.556 13.486 Atomic orbital electron populations 1.21559 0.97307 0.99142 0.99228 1.18960 0.92918 0.90739 0.86611 1.01328 1.21589 1.31759 1.12705 0.91686 0.92503 1.25722 0.95105 0.95654 1.02011 1.70026 1.37370 1.24025 1.24201 0.85437 0.78204 0.78565 0.79007 1.19207 1.20588 1.20278 1.60650 1.31715 1.31308 1.05173 1.21799 0.90432 0.94384 0.92636 0.89829 1.21642 0.91218 1.02123 0.93894 1.22029 0.97383 0.98610 0.95137 1.20542 0.91285 1.00200 0.99757 1.21418 0.98049 0.96964 0.96669 1.21240 0.98178 1.00536 0.94518 1.20843 0.93301 0.99646 0.99886 1.23658 0.97131 0.99295 0.98527 0.95029 0.92371 0.95649 0.92742 0.84817 0.87842 0.88653 0.83673 0.82185 0.83752 0.88245 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.77 9.18 71.98 0.66 -5.11 16 2 C 0.22 11.32 2.46 44.17 0.11 11.42 16 3 H -0.03 -1.80 7.83 -2.39 -0.02 -1.82 16 4 C -0.54 -30.31 8.59 25.60 0.22 -30.09 16 5 H 0.06 3.16 7.62 -2.91 -0.02 3.13 16 6 C 0.01 0.81 5.30 84.65 0.45 1.26 16 7 N -0.92 -53.40 11.32 21.45 0.24 -53.16 16 8 Si 0.96 44.01 29.54 68.60 2.03 46.03 16 9 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 10 H -0.28 -12.52 7.11 99.48 0.71 -11.82 16 11 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 12 N -0.66 -29.21 6.43 -475.87 -3.06 -32.27 16 13 C 0.12 4.49 4.20 44.41 0.19 4.68 16 14 H 0.08 3.33 7.54 -2.39 -0.02 3.31 16 15 C -0.05 -1.53 7.79 27.48 0.21 -1.31 16 16 C -0.13 -3.93 7.60 -19.82 -0.15 -4.08 16 17 C -0.10 -2.43 10.04 22.25 0.22 -2.20 16 18 C -0.11 -2.51 10.06 22.25 0.22 -2.29 16 19 C -0.13 -3.31 10.03 22.21 0.22 -3.09 16 20 C -0.12 -3.99 10.05 22.38 0.22 -3.76 16 21 C -0.18 -6.57 6.77 -21.73 -0.15 -6.71 16 22 H 0.03 1.55 8.14 -2.39 -0.02 1.53 16 23 H 0.06 3.22 6.07 -2.39 -0.01 3.20 16 24 H 0.02 1.13 7.78 -2.39 -0.02 1.11 16 25 H 0.26 14.47 8.31 -92.71 -0.77 13.70 16 26 H 0.33 15.01 7.88 -89.70 -0.71 14.31 16 27 H 0.10 2.57 8.14 -2.39 -0.02 2.55 16 28 H 0.10 2.78 8.13 -2.39 -0.02 2.76 16 29 H 0.15 2.60 8.06 -2.91 -0.02 2.57 16 30 H 0.16 2.31 8.06 -2.91 -0.02 2.29 16 31 H 0.14 2.94 8.06 -2.91 -0.02 2.92 16 32 H 0.10 3.54 8.06 -2.91 -0.02 3.52 16 Total: -1.00 -62.31 270.34 2.04 -60.27 By element: Atomic # 1 Polarization: 20.02 SS G_CDS: 0.40 Total: 20.42 kcal Atomic # 6 Polarization: -43.73 SS G_CDS: 2.44 Total: -41.29 kcal Atomic # 7 Polarization: -82.61 SS G_CDS: -2.82 Total: -85.43 kcal Atomic # 14 Polarization: 44.01 SS G_CDS: 2.03 Total: 46.03 kcal Total: -62.31 2.04 -60.27 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306749414.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.173 kcal (2) G-P(sol) polarization free energy of solvation -62.310 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.862 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.266 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds