Wall clock time and date at job start Mon Mar 30 2020 02:55:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30883 * 1 3 3 Si 1.86796 * 119.99873 * 2 1 4 4 H 1.48502 * 109.47015 * 239.99768 * 3 2 1 5 5 H 1.48491 * 109.47282 * 359.97438 * 3 2 1 6 6 H 1.48505 * 109.46912 * 120.00331 * 3 2 1 7 7 C 1.39884 * 119.99755 * 179.97438 * 2 1 3 8 8 H 1.07993 * 119.99623 * 163.18012 * 7 2 1 9 9 C 1.41321 * 119.99844 * 343.17769 * 7 2 1 10 10 C 1.40356 * 120.01350 * 334.35359 * 9 7 2 11 11 C 1.39110 * 119.41778 * 180.02562 * 10 9 7 12 12 N 1.35937 * 133.45550 * 180.02562 * 11 10 9 13 13 C 1.30060 * 109.54728 * 180.02562 * 12 11 10 14 14 N 1.36115 * 110.17765 * 359.97438 * 13 12 11 15 15 H 0.97002 * 126.28653 * 180.02562 * 14 13 12 16 16 C 1.37763 * 107.43159 * 359.97438 * 14 13 12 17 17 C 1.39367 * 133.74541 * 180.02562 * 16 14 13 18 18 C 1.50696 * 119.85674 * 0.02562 * 17 16 14 19 19 O 1.42905 * 109.46914 * 179.97438 * 18 17 16 20 20 C 1.36143 * 120.28061 * 179.97438 * 17 16 14 21 21 H 0.96998 * 120.00209 * 0.02562 * 1 2 3 22 22 H 1.07996 * 120.28905 * 0.06495 * 10 9 7 23 23 H 1.07998 * 124.90721 * 179.97438 * 13 12 11 24 24 H 1.08999 * 109.47425 * 299.97586 * 18 17 16 25 25 H 1.09000 * 109.46826 * 59.98121 * 18 17 16 26 26 H 0.96699 * 113.99578 * 180.02562 * 19 18 17 27 27 H 1.08000 * 119.81429 * 179.72252 * 20 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2428 1.6177 0.0000 4 1 3.0966 1.6964 -1.2125 5 1 1.2778 2.7464 -0.0006 6 1 3.0966 1.6963 1.2125 7 6 2.0082 -1.2115 0.0005 8 1 3.0535 -1.2316 -0.2701 9 6 1.3469 -2.4089 0.3553 10 6 0.2217 -2.3678 1.1933 11 6 -0.4195 -3.5541 1.5350 12 7 -1.5024 -3.8437 2.3040 13 6 -1.7018 -5.1289 2.3084 14 7 -0.7637 -5.7523 1.5442 15 1 -0.6940 -6.7067 1.3857 16 6 0.0680 -4.7787 1.0360 17 6 1.1860 -4.8042 0.2043 18 6 1.6988 -6.1195 -0.3231 19 8 2.8435 -5.8886 -1.1468 20 6 1.8162 -3.6460 -0.1346 21 1 -0.4850 0.8400 -0.0004 22 1 -0.1435 -1.4235 1.5689 23 1 -2.4968 -5.6292 2.8414 24 1 1.9758 -6.7627 0.5121 25 1 0.9194 -6.6035 -0.9117 26 1 3.2270 -6.6933 -1.5217 27 1 2.6846 -3.6750 -0.7760 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306892147.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:00 Heat of formation + Delta-G solvation = 11.667891 kcal Electronic energy + Delta-G solvation = -14056.728089 eV Core-core repulsion = 11586.796321 eV Total energy + Delta-G solvation = -2469.931767 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 218.080 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.80087 -37.10776 -35.70557 -33.22952 -32.04255 -29.53937 -28.41609 -25.49499 -24.70330 -21.56284 -20.69989 -19.68932 -17.45261 -17.05605 -16.32975 -15.50240 -14.81213 -14.67835 -14.16713 -13.79961 -13.16470 -12.93975 -12.52362 -11.84871 -11.57683 -11.08407 -10.87710 -10.69516 -10.37826 -10.07712 -9.82616 -9.76528 -9.39465 -9.01976 -8.79948 -7.16682 -6.79356 -6.59362 -4.19283 2.32177 2.85335 3.16615 3.18776 3.25916 3.90430 3.93103 4.05581 4.64071 4.73337 5.26813 5.49034 5.59620 5.71969 5.92010 5.97602 6.54970 6.77798 6.82128 7.10691 7.30522 7.47911 7.65547 7.89441 7.98442 8.07348 8.19028 8.41032 8.58566 8.96620 9.00007 9.08992 10.35807 Molecular weight = 218.08amu Principal moments of inertia in cm(-1) A = 0.029281 B = 0.010263 C = 0.007776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 956.028638 B = 2727.479642 C = 3599.854104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.795 5.795 2 C 0.074 3.926 3 Si 0.907 3.093 4 H -0.267 1.267 5 H -0.280 1.280 6 H -0.265 1.265 7 C -0.462 4.462 8 H 0.078 0.922 9 C 0.092 3.908 10 C -0.138 4.138 11 C 0.072 3.928 12 N -0.508 5.508 13 C 0.222 3.778 14 N -0.612 5.612 15 H 0.404 0.596 16 C -0.037 4.037 17 C -0.094 4.094 18 C 0.130 3.870 19 O -0.560 6.560 20 C -0.127 4.127 21 H 0.280 0.720 22 H 0.126 0.874 23 H 0.196 0.804 24 H 0.039 0.961 25 H 0.039 0.961 26 H 0.370 0.630 27 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.812 -9.589 0.375 9.631 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.421 5.421 2 C -0.143 4.143 3 Si 0.732 3.268 4 H -0.192 1.192 5 H -0.205 1.205 6 H -0.189 1.189 7 C -0.493 4.493 8 H 0.096 0.904 9 C 0.088 3.912 10 C -0.160 4.160 11 C -0.043 4.043 12 N -0.230 5.230 13 C -0.065 4.065 14 N -0.227 5.227 15 H 0.240 0.760 16 C -0.143 4.143 17 C -0.097 4.097 18 C 0.052 3.948 19 O -0.364 6.364 20 C -0.147 4.147 21 H 0.091 0.909 22 H 0.144 0.856 23 H 0.212 0.788 24 H 0.057 0.943 25 H 0.057 0.943 26 H 0.215 0.785 27 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 0.021 -8.077 0.940 8.131 hybrid contribution 0.729 -1.044 -0.640 1.425 sum 0.750 -9.121 0.300 9.157 Atomic orbital electron populations 1.69844 1.07429 1.29099 1.35708 1.25849 0.94703 1.01093 0.92621 0.86391 0.80068 0.80536 0.79795 1.19172 1.20478 1.18932 1.19373 0.97613 0.90910 1.41377 0.90415 1.17372 0.91897 0.91984 0.89971 1.20456 0.99269 0.94512 1.01790 1.18991 0.93774 0.93300 0.98228 1.70376 1.17877 1.12303 1.22469 1.24849 0.94975 0.89613 0.97081 1.42690 1.27165 1.08303 1.44511 0.76039 1.18283 0.98600 0.89381 1.08012 1.17819 0.95976 0.94256 1.01666 1.20724 0.86699 0.95478 0.91904 1.86594 1.46088 1.35530 1.68185 1.20706 1.01191 0.91257 1.01528 0.90935 0.85608 0.78759 0.94255 0.94252 0.78506 0.86608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -21.69 10.96 55.54 0.61 -21.08 15 2 C 0.07 1.95 5.14 -17.34 -0.09 1.86 15 3 Si 0.91 19.39 29.59 -169.99 -5.03 14.36 15 4 H -0.27 -5.59 7.11 56.52 0.40 -5.19 15 5 H -0.28 -5.84 7.11 56.52 0.40 -5.44 15 6 H -0.26 -5.61 7.11 56.52 0.40 -5.20 15 7 C -0.46 -12.62 9.04 -37.79 -0.34 -12.97 15 8 H 0.08 2.02 7.90 -52.49 -0.41 1.60 15 9 C 0.09 2.54 5.56 -106.85 -0.59 1.94 15 10 C -0.14 -3.88 8.73 -38.46 -0.34 -4.22 15 11 C 0.07 1.87 7.21 -84.70 -0.61 1.26 15 12 N -0.51 -11.99 11.28 -12.05 -0.14 -12.13 15 13 C 0.22 3.98 12.96 -89.75 -1.16 2.81 15 14 N -0.61 -10.73 6.21 -11.59 -0.07 -10.80 15 15 H 0.40 5.23 8.96 -40.82 -0.37 4.86 15 16 C -0.04 -0.85 7.00 -83.76 -0.59 -1.43 15 17 C -0.09 -2.10 5.85 -104.96 -0.61 -2.71 15 18 C 0.13 2.19 7.38 36.00 0.27 2.45 15 19 O -0.56 -9.17 12.09 -35.23 -0.43 -9.60 15 20 C -0.13 -3.19 9.05 -39.26 -0.36 -3.54 15 21 H 0.28 7.00 8.30 -40.82 -0.34 6.66 15 22 H 0.13 3.74 6.19 -52.49 -0.32 3.41 15 23 H 0.20 2.36 8.06 -52.49 -0.42 1.94 15 24 H 0.04 0.58 8.14 -51.93 -0.42 0.16 15 25 H 0.04 0.60 8.14 -51.93 -0.42 0.17 15 26 H 0.37 3.75 9.12 45.56 0.42 4.17 15 27 H 0.12 2.82 6.93 -52.49 -0.36 2.46 15 LS Contribution 241.13 15.07 3.63 3.63 Total: -1.00 -33.24 241.13 -7.30 -40.55 By element: Atomic # 1 Polarization: 11.07 SS G_CDS: -1.46 Total: 9.61 kcal Atomic # 6 Polarization: -10.12 SS G_CDS: -4.43 Total: -14.54 kcal Atomic # 7 Polarization: -44.42 SS G_CDS: 0.40 Total: -44.01 kcal Atomic # 8 Polarization: -9.17 SS G_CDS: -0.43 Total: -9.60 kcal Atomic # 14 Polarization: 19.39 SS G_CDS: -5.03 Total: 14.36 kcal Total LS contribution 3.63 Total: 3.63 kcal Total: -33.24 -7.30 -40.55 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306892147.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.213 kcal (2) G-P(sol) polarization free energy of solvation -33.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.546 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.668 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds