Wall clock time and date at job start Mon Mar 30 2020 02:55:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30883 * 1 3 3 Si 1.86796 * 119.99873 * 2 1 4 4 H 1.48502 * 109.47015 * 239.99768 * 3 2 1 5 5 H 1.48491 * 109.47282 * 359.97438 * 3 2 1 6 6 H 1.48505 * 109.46912 * 120.00331 * 3 2 1 7 7 C 1.39884 * 119.99755 * 179.97438 * 2 1 3 8 8 H 1.07993 * 119.99623 * 163.18012 * 7 2 1 9 9 C 1.41321 * 119.99844 * 343.17769 * 7 2 1 10 10 C 1.40356 * 120.01350 * 334.35359 * 9 7 2 11 11 C 1.39110 * 119.41778 * 180.02562 * 10 9 7 12 12 N 1.35937 * 133.45550 * 180.02562 * 11 10 9 13 13 C 1.30060 * 109.54728 * 180.02562 * 12 11 10 14 14 N 1.36115 * 110.17765 * 359.97438 * 13 12 11 15 15 H 0.97002 * 126.28653 * 180.02562 * 14 13 12 16 16 C 1.37763 * 107.43159 * 359.97438 * 14 13 12 17 17 C 1.39367 * 133.74541 * 180.02562 * 16 14 13 18 18 C 1.50696 * 119.85674 * 0.02562 * 17 16 14 19 19 O 1.42905 * 109.46914 * 179.97438 * 18 17 16 20 20 C 1.36143 * 120.28061 * 179.97438 * 17 16 14 21 21 H 0.96998 * 120.00209 * 0.02562 * 1 2 3 22 22 H 1.07996 * 120.28905 * 0.06495 * 10 9 7 23 23 H 1.07998 * 124.90721 * 179.97438 * 13 12 11 24 24 H 1.08999 * 109.47425 * 299.97586 * 18 17 16 25 25 H 1.09000 * 109.46826 * 59.98121 * 18 17 16 26 26 H 0.96699 * 113.99578 * 180.02562 * 19 18 17 27 27 H 1.08000 * 119.81429 * 179.72252 * 20 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2428 1.6177 0.0000 4 1 3.0966 1.6964 -1.2125 5 1 1.2778 2.7464 -0.0006 6 1 3.0966 1.6963 1.2125 7 6 2.0082 -1.2115 0.0005 8 1 3.0535 -1.2316 -0.2701 9 6 1.3469 -2.4089 0.3553 10 6 0.2217 -2.3678 1.1933 11 6 -0.4195 -3.5541 1.5350 12 7 -1.5024 -3.8437 2.3040 13 6 -1.7018 -5.1289 2.3084 14 7 -0.7637 -5.7523 1.5442 15 1 -0.6940 -6.7067 1.3857 16 6 0.0680 -4.7787 1.0360 17 6 1.1860 -4.8042 0.2043 18 6 1.6988 -6.1195 -0.3231 19 8 2.8435 -5.8886 -1.1468 20 6 1.8162 -3.6460 -0.1346 21 1 -0.4850 0.8400 -0.0004 22 1 -0.1435 -1.4235 1.5689 23 1 -2.4968 -5.6292 2.8414 24 1 1.9758 -6.7627 0.5121 25 1 0.9194 -6.6035 -0.9117 26 1 3.2270 -6.6933 -1.5217 27 1 2.6846 -3.6750 -0.7760 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306892147.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:00 Heat of formation + Delta-G solvation = -13.673361 kcal Electronic energy + Delta-G solvation = -14057.826968 eV Core-core repulsion = 11586.796321 eV Total energy + Delta-G solvation = -2471.030647 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 218.080 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -42.48922 -38.64124 -37.33078 -35.07514 -33.74401 -31.32968 -30.20691 -27.27573 -26.40321 -23.19507 -22.55023 -21.35512 -19.13970 -18.76490 -17.77373 -17.31976 -16.60356 -16.10224 -15.83199 -15.29217 -14.77026 -14.70457 -14.24029 -13.65627 -13.31343 -12.82054 -12.64358 -12.33216 -12.13469 -11.85341 -11.65745 -11.40924 -10.96776 -10.79520 -10.57643 -9.04153 -8.62747 -8.52996 -6.23924 0.56405 1.01086 1.39245 1.51563 1.54743 2.23710 2.26676 2.44011 2.80039 3.45503 3.70300 3.85011 4.09248 4.35823 4.47403 4.59360 4.78070 5.00791 5.06332 5.23580 5.33773 5.58618 5.86855 6.04034 6.12185 6.21740 6.59783 6.92371 6.98567 7.03735 7.06788 7.37429 8.42998 Molecular weight = 218.08amu Principal moments of inertia in cm(-1) A = 0.029281 B = 0.010263 C = 0.007776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 956.028638 B = 2727.479642 C = 3599.854104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.834 5.834 2 C 0.029 3.971 3 Si 0.984 3.016 4 H -0.256 1.256 5 H -0.270 1.270 6 H -0.261 1.261 7 C -0.500 4.500 8 H 0.078 0.922 9 C 0.068 3.932 10 C -0.180 4.180 11 C 0.045 3.955 12 N -0.566 5.566 13 C 0.260 3.740 14 N -0.588 5.588 15 H 0.433 0.567 16 C -0.041 4.041 17 C -0.083 4.083 18 C 0.135 3.865 19 O -0.583 6.583 20 C -0.158 4.158 21 H 0.284 0.716 22 H 0.092 0.908 23 H 0.262 0.738 24 H 0.071 0.929 25 H 0.068 0.932 26 H 0.398 0.602 27 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.658 -12.230 0.508 12.259 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.460 5.460 2 C -0.184 4.184 3 Si 0.805 3.195 4 H -0.180 1.180 5 H -0.195 1.195 6 H -0.186 1.186 7 C -0.531 4.531 8 H 0.097 0.903 9 C 0.064 3.936 10 C -0.203 4.203 11 C -0.070 4.070 12 N -0.290 5.290 13 C -0.027 4.027 14 N -0.204 5.204 15 H 0.274 0.726 16 C -0.148 4.148 17 C -0.087 4.087 18 C 0.058 3.942 19 O -0.392 6.392 20 C -0.177 4.177 21 H 0.094 0.906 22 H 0.110 0.890 23 H 0.277 0.723 24 H 0.089 0.911 25 H 0.085 0.915 26 H 0.248 0.752 27 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -0.115 -10.806 1.051 10.858 hybrid contribution 0.660 -0.478 -0.621 1.025 sum 0.545 -11.284 0.430 11.306 Atomic orbital electron populations 1.69955 1.09174 1.30165 1.36737 1.26792 0.95441 1.04667 0.91496 0.85234 0.78649 0.75557 0.80092 1.17970 1.19489 1.18562 1.19684 0.97917 0.92224 1.43233 0.90347 1.17705 0.92223 0.93443 0.90237 1.20248 1.01213 0.94432 1.04420 1.19195 0.94815 0.94003 0.99011 1.70350 1.18450 1.15672 1.24496 1.26081 0.94370 0.88158 0.94121 1.42592 1.25560 1.09123 1.43135 0.72649 1.18291 0.99090 0.89631 1.07783 1.18361 0.94657 0.96119 0.99516 1.20718 0.87762 0.92276 0.93470 1.86530 1.46069 1.38157 1.68394 1.20736 1.02262 0.91656 1.03086 0.90588 0.89000 0.72291 0.91078 0.91452 0.75194 0.86743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -48.30 10.96 21.82 0.24 -48.06 15 2 C 0.03 1.61 5.14 85.23 0.44 2.05 15 3 Si 0.98 41.29 29.59 68.60 2.03 43.32 15 4 H -0.26 -10.16 7.11 99.48 0.71 -9.46 15 5 H -0.27 -10.79 7.11 99.48 0.71 -10.09 15 6 H -0.26 -10.70 7.11 99.48 0.71 -9.99 15 7 C -0.50 -28.99 9.04 23.43 0.21 -28.78 15 8 H 0.08 4.32 7.90 -2.91 -0.02 4.29 15 9 C 0.07 3.97 5.56 -21.31 -0.12 3.86 15 10 C -0.18 -10.83 8.73 23.00 0.20 -10.62 15 11 C 0.04 2.38 7.21 39.38 0.28 2.66 15 12 N -0.57 -26.36 11.28 -192.05 -2.17 -28.53 15 13 C 0.26 8.26 12.96 180.04 2.33 10.60 15 14 N -0.59 -18.10 6.21 -190.57 -1.18 -19.29 15 15 H 0.43 8.60 8.96 -92.71 -0.83 7.77 15 16 C -0.04 -1.80 7.00 39.14 0.27 -1.52 15 17 C -0.08 -3.63 5.85 -20.08 -0.12 -3.75 15 18 C 0.14 4.05 7.38 71.23 0.53 4.58 15 19 O -0.58 -17.47 12.09 -148.98 -1.80 -19.27 15 20 C -0.16 -8.13 9.05 22.48 0.20 -7.93 15 21 H 0.28 15.02 8.30 -92.71 -0.77 14.25 15 22 H 0.09 5.96 6.19 -2.91 -0.02 5.95 15 23 H 0.26 4.54 8.06 -2.91 -0.02 4.52 15 24 H 0.07 1.73 8.14 -2.39 -0.02 1.71 15 25 H 0.07 1.69 8.14 -2.39 -0.02 1.67 15 26 H 0.40 6.63 9.12 -74.06 -0.68 5.95 15 27 H 0.11 5.76 6.93 -2.91 -0.02 5.74 15 Total: -1.00 -79.45 241.13 1.07 -78.37 By element: Atomic # 1 Polarization: 22.60 SS G_CDS: -0.28 Total: 22.32 kcal Atomic # 6 Polarization: -33.10 SS G_CDS: 4.24 Total: -28.86 kcal Atomic # 7 Polarization: -92.77 SS G_CDS: -3.11 Total: -95.88 kcal Atomic # 8 Polarization: -17.47 SS G_CDS: -1.80 Total: -19.27 kcal Atomic # 14 Polarization: 41.29 SS G_CDS: 2.03 Total: 43.32 kcal Total: -79.45 1.07 -78.37 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306892147.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.700 kcal (2) G-P(sol) polarization free energy of solvation -79.448 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.374 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds