Wall clock time and date at job start Mon Mar 30 2020 02:56:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30790 * 1 3 3 Si 1.86803 * 120.00144 * 2 1 4 4 H 1.48499 * 109.47340 * 83.61723 * 3 2 1 5 5 H 1.48503 * 109.47167 * 203.61646 * 3 2 1 6 6 H 1.48506 * 109.46966 * 323.61332 * 3 2 1 7 7 C 1.40066 * 119.99997 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99912 * 24.33532 * 7 2 1 9 9 C 1.40721 * 120.00097 * 204.33471 * 7 2 1 10 10 C 1.40819 * 120.69696 * 25.28422 * 9 7 2 11 11 C 1.37620 * 120.04212 * 180.02562 * 10 9 7 12 12 C 1.38476 * 121.43633 * 359.97250 * 11 10 9 13 13 C 1.38664 * 121.00341 * 0.02807 * 12 11 10 14 14 O 1.35173 * 133.98721 * 180.02562 * 13 12 11 15 15 C 1.34192 * 107.95444 * 179.27388 * 14 13 12 16 16 C 1.50701 * 124.94026 * 180.02562 * 15 14 13 17 17 N 1.46898 * 109.47388 * 270.63735 * 16 15 14 18 18 N 1.30272 * 110.11081 * 0.62502 * 15 14 13 19 19 C 1.34579 * 108.93522 * 359.46712 * 18 15 14 20 20 H 0.97002 * 120.00246 * 173.04989 * 1 2 3 21 21 H 1.07996 * 119.98026 * 0.02562 * 10 9 7 22 22 H 1.08000 * 119.27788 * 179.97438 * 11 10 9 23 23 H 1.08000 * 119.49943 * 180.02562 * 12 11 10 24 24 H 1.09002 * 109.46751 * 30.63981 * 16 15 14 25 25 H 1.09000 * 109.46603 * 150.63610 * 16 15 14 26 26 H 1.00900 * 110.99544 * 56.04533 * 17 16 15 27 27 H 1.00898 * 111.00156 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3079 0.0000 0.0000 3 14 2.2420 1.6177 0.0000 4 1 2.3547 2.1243 1.3914 5 1 3.6004 1.4050 -0.5609 6 1 1.5133 2.6100 -0.8306 7 6 2.0082 -1.2130 -0.0005 8 1 1.5402 -2.1066 -0.3864 9 6 3.3217 -1.2674 0.5016 10 6 3.7660 -0.3315 1.4554 11 6 5.0535 -0.3969 1.9370 12 6 5.9376 -1.3711 1.5048 13 6 5.5545 -2.3182 0.5673 14 8 6.1809 -3.3587 -0.0260 15 6 5.3064 -3.9502 -0.8544 16 6 5.6064 -5.1542 -1.7097 17 7 6.1289 -4.7133 -3.0099 18 7 4.1643 -3.3245 -0.8211 19 6 4.2525 -2.3004 0.0476 20 1 -0.4850 -0.8339 -0.1016 21 1 3.0959 0.4381 1.8091 22 1 5.3814 0.3274 2.6679 23 1 6.9409 -1.3936 1.9040 24 1 6.3494 -5.7773 -1.2119 25 1 4.6928 -5.7290 -1.8611 26 1 6.9397 -4.1243 -2.8928 27 1 6.3383 -5.5030 -3.6020 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307429320.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:22 Heat of formation + Delta-G solvation = 21.942741 kcal Electronic energy + Delta-G solvation = -14049.570328 eV Core-core repulsion = 11580.084111 eV Total energy + Delta-G solvation = -2469.486216 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 218.080 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.98411 -36.77186 -34.75473 -33.88397 -33.31313 -30.14611 -28.72783 -25.78701 -24.39379 -22.07263 -20.72358 -20.22155 -18.51252 -16.78064 -16.34213 -15.82682 -15.54868 -14.51191 -14.23791 -14.10795 -13.53316 -12.82708 -12.61170 -12.44574 -12.17703 -11.32649 -11.24123 -10.97903 -10.50096 -10.30795 -10.11254 -9.72634 -9.42713 -9.10048 -8.72081 -7.88469 -7.62804 -7.32924 -4.72831 1.88034 2.56777 3.08108 3.19965 3.44559 3.49337 3.55996 3.82710 4.27780 4.69180 4.80638 5.19612 5.34212 5.65334 5.90786 6.00115 6.22969 6.41108 6.49287 6.95704 7.01210 7.10657 7.17193 7.36429 7.39524 7.47371 7.60543 7.72822 8.07705 8.20472 8.37716 8.90402 9.60752 Molecular weight = 218.08amu Principal moments of inertia in cm(-1) A = 0.033922 B = 0.010026 C = 0.008475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 825.225435 B = 2792.127298 C = 3302.898500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.775 5.775 2 C 0.041 3.959 3 Si 1.076 2.924 4 H -0.270 1.270 5 H -0.258 1.258 6 H -0.285 1.285 7 C -0.449 4.449 8 H 0.090 0.910 9 C 0.148 3.852 10 C -0.290 4.290 11 C -0.018 4.018 12 C -0.270 4.270 13 C 0.069 3.931 14 O -0.231 6.231 15 C 0.123 3.877 16 C 0.177 3.823 17 N -0.843 5.843 18 N -0.418 5.418 19 C -0.076 4.076 20 H 0.294 0.706 21 H 0.114 0.886 22 H 0.109 0.891 23 H 0.100 0.900 24 H 0.047 0.953 25 H 0.104 0.896 26 H 0.345 0.655 27 H 0.346 0.654 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.622 -3.289 -1.033 8.366 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.394 5.394 2 C -0.184 4.184 3 Si 0.900 3.100 4 H -0.196 1.196 5 H -0.182 1.182 6 H -0.212 1.212 7 C -0.474 4.474 8 H 0.108 0.892 9 C 0.143 3.857 10 C -0.310 4.310 11 C -0.036 4.036 12 C -0.290 4.290 13 C 0.018 3.982 14 O -0.123 6.123 15 C -0.085 4.085 16 C 0.046 3.954 17 N -0.375 5.375 18 N -0.146 5.146 19 C -0.193 4.193 20 H 0.107 0.893 21 H 0.131 0.869 22 H 0.127 0.873 23 H 0.118 0.882 24 H 0.065 0.935 25 H 0.123 0.877 26 H 0.157 0.843 27 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 6.047 -1.564 -1.423 6.406 hybrid contribution 1.522 -2.193 0.614 2.739 sum 7.569 -3.757 -0.809 8.489 Atomic orbital electron populations 1.70499 1.08247 1.34283 1.26393 1.27723 0.95503 1.05140 0.90003 0.83545 0.76173 0.72048 0.78216 1.19649 1.18186 1.21244 1.20905 0.97272 0.97937 1.31328 0.89197 1.17858 0.90534 0.87794 0.89485 1.20667 0.97493 1.06297 1.06555 1.20272 0.92651 0.94718 0.95974 1.18765 1.00931 1.01499 1.07834 1.20235 0.92197 0.89002 0.96789 1.84256 1.41179 1.37968 1.48939 1.25322 0.84693 1.00379 0.98067 1.19730 1.00917 0.88430 0.86301 1.58586 1.40035 1.24707 1.14181 1.69663 1.22646 1.05699 1.16612 1.20654 0.94147 1.01701 1.02841 0.89342 0.86879 0.87314 0.88158 0.93523 0.87748 0.84280 0.84063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -19.68 13.65 55.55 0.76 -18.92 15 2 C 0.04 1.03 5.34 -17.31 -0.09 0.94 15 3 Si 1.08 23.30 25.00 -169.99 -4.25 19.05 15 4 H -0.27 -5.43 6.66 56.52 0.38 -5.05 15 5 H -0.26 -5.70 7.02 56.52 0.40 -5.31 15 6 H -0.29 -5.92 7.11 56.52 0.40 -5.52 15 7 C -0.45 -12.15 9.44 -37.96 -0.36 -12.50 15 8 H 0.09 2.57 8.06 -52.49 -0.42 2.15 15 9 C 0.15 3.95 5.32 -104.75 -0.56 3.39 15 10 C -0.29 -6.98 7.40 -38.83 -0.29 -7.27 15 11 C -0.02 -0.38 9.95 -39.72 -0.40 -0.78 15 12 C -0.27 -6.09 10.02 -39.34 -0.39 -6.49 15 13 C 0.07 1.70 7.43 -38.69 -0.29 1.41 15 14 O -0.23 -5.27 10.79 3.55 0.04 -5.23 15 15 C 0.12 2.66 7.77 -12.94 -0.10 2.56 15 16 C 0.18 2.71 7.41 -4.98 -0.04 2.67 15 17 N -0.84 -11.50 9.61 -11.41 -0.11 -11.61 15 18 N -0.42 -10.67 11.28 -7.24 -0.08 -10.75 15 19 C -0.08 -2.03 7.21 -82.70 -0.60 -2.63 15 20 H 0.29 7.26 8.73 -40.82 -0.36 6.90 15 21 H 0.11 2.58 4.64 -52.49 -0.24 2.34 15 22 H 0.11 1.93 8.06 -52.49 -0.42 1.50 15 23 H 0.10 1.99 8.06 -52.49 -0.42 1.57 15 24 H 0.05 0.59 8.14 -51.93 -0.42 0.16 15 25 H 0.10 1.51 8.14 -51.93 -0.42 1.08 15 26 H 0.34 4.55 8.98 -39.29 -0.35 4.20 15 27 H 0.35 3.38 9.08 -39.29 -0.36 3.02 15 LS Contribution 240.28 15.07 3.62 3.62 Total: -1.00 -30.08 240.28 -5.38 -35.46 By element: Atomic # 1 Polarization: 9.31 SS G_CDS: -2.25 Total: 7.06 kcal Atomic # 6 Polarization: -15.57 SS G_CDS: -3.11 Total: -18.68 kcal Atomic # 7 Polarization: -41.85 SS G_CDS: 0.57 Total: -41.28 kcal Atomic # 8 Polarization: -5.27 SS G_CDS: 0.04 Total: -5.23 kcal Atomic # 14 Polarization: 23.30 SS G_CDS: -4.25 Total: 19.05 kcal Total LS contribution 3.62 Total: 3.62 kcal Total: -30.08 -5.38 -35.46 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307429320.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.406 kcal (2) G-P(sol) polarization free energy of solvation -30.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.463 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.943 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds