Wall clock time and date at job start Mon Mar 30 2020 02:33:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31569 * 1 3 3 Si 1.86800 * 120.00015 * 2 1 4 4 H 1.48498 * 109.47360 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47109 * 300.00040 * 3 2 1 6 6 H 1.48500 * 109.47210 * 59.99876 * 3 2 1 7 7 C 1.38642 * 120.00222 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00056 * 179.97438 * 7 2 1 9 9 O 1.34811 * 119.99990 * 0.02562 * 7 2 1 10 10 C 1.35804 * 117.00088 * 185.06285 * 9 7 2 11 11 C 1.38829 * 120.04382 * 354.39441 * 10 9 7 12 12 C 1.38271 * 119.95920 * 179.97438 * 11 10 9 13 13 F 1.35096 * 119.98099 * 180.02562 * 12 11 10 14 14 C 1.38727 * 120.03859 * 0.02562 * 12 11 10 15 15 F 1.35104 * 119.94994 * 179.97438 * 14 12 11 16 16 C 1.38425 * 120.08928 * 0.24847 * 14 12 11 17 17 C 1.38310 * 120.04032 * 359.49169 * 16 14 12 18 18 F 1.35105 * 120.01747 * 180.24967 * 17 16 14 19 19 H 0.96998 * 119.99811 * 0.02562 * 1 2 3 20 20 H 1.08001 * 120.01996 * 0.02562 * 11 10 9 21 21 H 1.08001 * 119.97679 * 179.74843 * 16 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3157 0.0000 0.0000 3 14 2.2497 1.6177 0.0000 4 1 3.7097 1.3464 -0.0006 5 1 1.8909 2.3965 -1.2125 6 1 1.8909 2.3965 1.2125 7 6 2.0090 -1.2006 0.0005 8 1 3.0889 -1.2006 0.0001 9 8 1.3349 -2.3682 0.0005 10 6 2.0705 -3.5047 0.1079 11 6 3.4571 -3.4391 0.0940 12 6 4.2043 -4.5974 0.2039 13 9 5.5537 -4.5340 0.1910 14 6 3.5691 -5.8245 0.3275 15 9 4.3009 -6.9551 0.4342 16 6 2.1866 -5.8925 0.3358 17 6 1.4357 -4.7356 0.2314 18 9 0.0864 -4.8021 0.2447 19 1 -0.4850 0.8400 -0.0004 20 1 3.9520 -2.4839 -0.0017 21 1 1.6939 -6.8492 0.4279 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307719327.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:33:13 Heat of formation + Delta-G solvation = -155.862520 kcal Electronic energy + Delta-G solvation = -14113.053410 eV Core-core repulsion = 10925.874393 eV Total energy + Delta-G solvation = -3187.179017 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 218.030 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -50.45978 -49.80374 -49.51498 -40.81529 -38.10001 -34.44442 -31.61742 -30.30971 -27.56775 -24.41124 -23.59532 -20.48770 -19.72458 -18.93553 -18.23056 -17.60660 -17.48466 -16.56816 -16.53137 -16.03213 -15.96596 -15.58868 -15.33748 -15.26506 -15.20309 -14.09652 -13.80305 -13.09842 -12.89184 -12.68532 -12.24104 -12.09925 -11.74155 -10.91114 -10.03610 -9.20387 -8.59995 -6.29365 -0.19768 -0.02545 1.37057 1.43722 1.55871 2.08285 2.19245 2.68136 2.91858 3.03210 3.10434 3.42940 3.58232 3.97726 4.52266 4.60307 4.69668 4.83010 5.00163 5.18082 5.70618 5.81620 6.81639 7.44240 8.60646 Molecular weight = 218.03amu Principal moments of inertia in cm(-1) A = 0.037582 B = 0.009408 C = 0.007550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 744.854023 B = 2975.615806 C = 3707.880589 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C -0.012 4.012 3 Si 1.023 2.977 4 H -0.247 1.247 5 H -0.268 1.268 6 H -0.268 1.268 7 C -0.423 4.423 8 H 0.115 0.885 9 O -0.197 6.197 10 C 0.113 3.887 11 C -0.225 4.225 12 C 0.115 3.885 13 F -0.129 7.129 14 C 0.007 3.993 15 F -0.130 7.130 16 C -0.090 4.090 17 C 0.031 3.969 18 F -0.139 7.139 19 H 0.279 0.721 20 H 0.160 0.840 21 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.631 -5.935 0.517 8.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.213 4.213 3 Si 0.841 3.159 4 H -0.170 1.170 5 H -0.192 1.192 6 H -0.193 1.193 7 C -0.497 4.497 8 H 0.132 0.868 9 O -0.101 6.101 10 C 0.059 3.941 11 C -0.245 4.245 12 C 0.094 3.906 13 F -0.108 7.108 14 C -0.014 4.014 15 F -0.109 7.109 16 C -0.110 4.110 17 C 0.011 3.989 18 F -0.118 7.118 19 H 0.088 0.912 20 H 0.177 0.823 21 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges 6.222 -5.778 0.497 8.505 hybrid contribution 0.194 0.564 -0.019 0.597 sum 6.416 -5.214 0.478 8.281 Atomic orbital electron populations 1.70188 1.08202 1.29567 1.45973 1.26697 0.96831 1.02914 0.94834 0.84470 0.78478 0.74255 0.78688 1.16965 1.19244 1.19264 1.22064 0.93072 0.80552 1.54034 0.86755 1.84047 1.35224 1.12361 1.78431 1.19460 0.90761 0.87792 0.96133 1.20796 0.92275 0.99170 1.12251 1.17316 0.77089 0.92810 1.03335 1.91485 1.28256 1.97142 1.93868 1.16756 0.88965 0.80914 1.14807 1.91477 1.76743 1.48136 1.94567 1.20689 0.90946 0.98726 1.00592 1.16721 0.77332 0.91544 1.13348 1.91454 1.28718 1.96953 1.94691 0.91175 0.82296 0.79405 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -51.98 13.67 21.61 0.30 -51.69 14 2 C -0.01 -0.64 5.49 84.83 0.47 -0.17 14 3 Si 1.02 39.28 29.55 68.60 2.03 41.31 14 4 H -0.25 -8.64 7.11 99.48 0.71 -7.94 14 5 H -0.27 -9.93 7.11 99.48 0.71 -9.22 14 6 H -0.27 -9.95 7.11 99.48 0.71 -9.24 14 7 C -0.42 -22.45 9.49 67.92 0.64 -21.80 14 8 H 0.12 5.41 5.20 -2.91 -0.02 5.40 14 9 O -0.20 -10.91 9.62 -23.15 -0.22 -11.13 14 10 C 0.11 5.14 6.65 22.60 0.15 5.29 14 11 C -0.22 -8.93 9.14 22.42 0.20 -8.72 14 12 C 0.11 4.06 7.30 22.39 0.16 4.22 14 13 F -0.13 -4.36 17.18 44.97 0.77 -3.59 14 14 C 0.01 0.21 7.31 22.43 0.16 0.38 14 15 F -0.13 -4.00 17.18 44.97 0.77 -3.22 14 16 C -0.09 -2.84 10.00 22.33 0.22 -2.62 14 17 C 0.03 1.25 7.31 22.48 0.16 1.41 14 18 F -0.14 -5.95 17.11 44.97 0.77 -5.18 14 19 H 0.28 14.58 8.31 -92.71 -0.77 13.81 14 20 H 0.16 6.20 5.64 -2.91 -0.02 6.18 14 21 H 0.19 4.43 8.06 -2.91 -0.02 4.41 14 Total: -1.00 -60.02 215.53 7.89 -52.13 By element: Atomic # 1 Polarization: 2.10 SS G_CDS: 1.30 Total: 3.40 kcal Atomic # 6 Polarization: -24.20 SS G_CDS: 2.18 Total: -22.02 kcal Atomic # 7 Polarization: -51.98 SS G_CDS: 0.30 Total: -51.69 kcal Atomic # 8 Polarization: -10.91 SS G_CDS: -0.22 Total: -11.13 kcal Atomic # 9 Polarization: -14.31 SS G_CDS: 2.31 Total: -11.99 kcal Atomic # 14 Polarization: 39.28 SS G_CDS: 2.03 Total: 41.31 kcal Total: -60.02 7.89 -52.13 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307719327.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.736 kcal (2) G-P(sol) polarization free energy of solvation -60.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -163.753 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.126 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.863 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds