Wall clock time and date at job start Mon Mar 30 2020 02:21:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09003 * 109.47414 * 2 1 4 4 C 1.50699 * 109.47162 * 239.99865 * 2 1 3 5 5 H 1.08002 * 120.00325 * 239.99820 * 4 2 1 6 6 C 1.37878 * 120.00100 * 60.00526 * 4 2 1 7 7 N 1.31515 * 119.99523 * 359.97438 * 6 4 2 8 8 Si 1.86799 * 120.00148 * 180.02562 * 6 4 2 9 9 H 1.48504 * 109.47112 * 359.97438 * 8 6 4 10 10 H 1.48500 * 109.47301 * 119.99725 * 8 6 4 11 11 H 1.48499 * 109.46992 * 239.99824 * 8 6 4 12 12 N 1.46900 * 109.47181 * 120.00072 * 2 1 3 13 13 C 1.47907 * 110.99845 * 55.12410 * 12 2 1 14 14 C 1.53990 * 107.05675 * 145.84878 * 13 12 2 15 15 C 1.54597 * 105.14143 * 358.77466 * 14 13 12 16 16 F 1.39903 * 110.72724 * 96.40063 * 15 14 13 17 17 C 1.52999 * 110.72690 * 219.68730 * 15 14 13 18 18 O 1.42899 * 109.46814 * 298.54729 * 17 15 14 19 19 C 1.48529 * 111.00554 * 172.52247 * 12 2 1 20 20 H 1.08997 * 109.47143 * 300.00424 * 1 2 3 21 21 H 1.09002 * 109.46863 * 60.00134 * 1 2 3 22 22 H 1.09003 * 109.47414 * 180.02562 * 1 2 3 23 23 H 0.97008 * 119.99850 * 180.02562 * 7 6 4 24 24 H 1.08996 * 109.91720 * 26.48982 * 13 12 2 25 25 H 1.09004 * 110.07880 * 265.28981 * 13 12 2 26 26 H 1.09005 * 110.30685 * 239.86077 * 14 13 12 27 27 H 1.09003 * 110.39778 * 117.73322 * 14 13 12 28 28 H 1.08999 * 109.47130 * 58.54299 * 17 15 14 29 29 H 1.08997 * 109.47554 * 178.54680 * 17 15 14 30 30 H 0.96710 * 114.00096 * 179.97438 * 18 17 15 31 31 H 1.09002 * 110.67056 * 81.84058 * 19 12 2 32 32 H 1.08999 * 110.66437 * 318.71748 * 19 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1314 6 6 1.6993 -0.2394 -2.4827 7 7 0.9429 0.8297 -2.6033 8 14 2.3214 -1.1204 -4.0079 9 1 3.1464 -2.2871 -3.6037 10 1 1.1661 -1.5867 -4.8161 11 1 3.1467 -0.1874 -4.8164 12 7 2.0196 -0.6925 1.1994 13 6 1.4519 -2.0550 1.2937 14 6 2.5323 -2.9517 1.9261 15 6 3.7471 -2.0226 2.1515 16 9 3.7644 -1.5397 3.4645 17 6 5.0529 -2.7493 1.8232 18 8 5.2019 -3.8758 2.6897 19 6 3.4933 -0.8706 1.1470 20 1 -0.3633 0.5139 0.8899 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3634 -1.0277 0.0005 23 1 0.7083 1.1610 -3.4844 24 1 1.2003 -2.4221 0.2987 25 1 0.5615 -2.0467 1.9224 26 1 2.7967 -3.7621 1.2467 27 1 2.1828 -3.3548 2.8767 28 1 5.0296 -3.0882 0.7875 29 1 5.8927 -2.0690 1.9640 30 1 6.0099 -4.3850 2.5375 31 1 4.0024 0.0384 1.4675 32 1 3.8107 -1.1574 0.1445 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307753297.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:21:58 Heat of formation + Delta-G solvation = -94.484312 kcal Electronic energy + Delta-G solvation = -15624.294567 eV Core-core repulsion = 12920.249476 eV Total energy + Delta-G solvation = -2704.045092 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 217.122 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -47.06664 -38.25569 -36.57414 -33.59395 -31.30413 -28.94256 -28.10983 -25.24043 -24.30474 -21.97813 -19.99512 -19.08617 -17.29109 -16.66096 -15.90374 -15.58100 -14.72382 -14.26768 -13.96750 -13.82633 -13.50114 -12.90055 -12.68146 -12.25195 -11.92736 -11.60897 -11.08874 -10.95129 -10.71759 -10.57760 -10.47145 -10.25553 -10.06984 -10.04864 -9.95034 -9.76275 -9.26822 -8.46616 -7.28267 -6.06743 -4.20326 3.19863 3.28955 3.30042 4.08079 4.32085 4.71790 4.88789 5.00227 5.18042 5.27913 5.33840 5.50501 5.60994 5.95657 6.03884 6.25071 6.43494 6.59847 6.66405 6.79080 6.85231 7.00647 7.08956 7.49030 7.57207 7.63046 7.87195 8.03783 8.15999 8.33349 8.88903 9.47110 10.93608 Molecular weight = 217.12amu Principal moments of inertia in cm(-1) A = 0.034670 B = 0.009809 C = 0.008416 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 807.431193 B = 2853.739992 C = 3326.003059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.196 3.804 3 H 0.042 0.958 4 C -0.546 4.546 5 H 0.059 0.941 6 C 0.069 3.931 7 N -0.883 5.883 8 Si 0.888 3.112 9 H -0.275 1.275 10 H -0.283 1.283 11 H -0.283 1.283 12 N -0.513 5.513 13 C 0.039 3.961 14 C -0.139 4.139 15 C 0.115 3.885 16 F -0.199 7.199 17 C 0.063 3.937 18 O -0.566 6.566 19 C 0.025 3.975 20 H 0.015 0.985 21 H 0.085 0.915 22 H 0.027 0.973 23 H 0.262 0.738 24 H 0.064 0.936 25 H 0.064 0.936 26 H 0.075 0.925 27 H 0.074 0.926 28 H 0.065 0.935 29 H 0.056 0.944 30 H 0.377 0.623 31 H 0.079 0.921 32 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.052 -6.638 5.215 10.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.090 3.910 3 H 0.060 0.940 4 C -0.585 4.585 5 H 0.077 0.923 6 C -0.134 4.134 7 N -0.521 5.521 8 Si 0.716 3.284 9 H -0.199 1.199 10 H -0.209 1.209 11 H -0.209 1.209 12 N -0.238 5.238 13 C -0.090 4.090 14 C -0.177 4.177 15 C 0.096 3.904 16 F -0.179 7.179 17 C -0.016 4.016 18 O -0.371 6.371 19 C -0.104 4.104 20 H 0.034 0.966 21 H 0.103 0.897 22 H 0.046 0.954 23 H 0.072 0.928 24 H 0.082 0.918 25 H 0.083 0.917 26 H 0.093 0.907 27 H 0.093 0.907 28 H 0.083 0.917 29 H 0.074 0.926 30 H 0.223 0.777 31 H 0.097 0.903 32 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 5.208 -5.938 5.775 9.785 hybrid contribution 1.080 -1.073 -1.860 2.403 sum 6.288 -7.011 3.915 10.199 Atomic orbital electron populations 1.21807 0.97504 0.99282 1.00457 1.19441 0.92598 0.94618 0.84371 0.93979 1.21698 1.32163 1.12979 0.91654 0.92322 1.24923 0.94757 0.94812 0.98918 1.69895 1.36085 1.22634 1.23474 0.86607 0.78741 0.79693 0.83355 1.19926 1.20921 1.20935 1.65220 1.02583 1.14929 1.41022 1.22753 0.96540 0.89440 1.00225 1.22912 0.94923 0.97943 1.01963 1.21877 0.94588 0.94683 0.79279 1.92819 1.97464 1.89497 1.38152 1.22700 0.97017 0.88034 0.93819 1.86529 1.46831 1.42614 1.61134 1.23647 0.92831 0.96112 0.97770 0.96556 0.89672 0.95375 0.92830 0.91807 0.91733 0.90661 0.90688 0.91657 0.92614 0.77658 0.90306 0.90047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.21 8.77 37.16 0.33 -2.89 16 2 C 0.20 4.88 2.55 -68.87 -0.18 4.71 16 3 H 0.04 1.16 8.14 -51.93 -0.42 0.73 16 4 C -0.55 -14.12 6.43 -34.44 -0.22 -14.34 16 5 H 0.06 1.49 5.99 -52.49 -0.31 1.18 16 6 C 0.07 1.83 5.30 -17.82 -0.09 1.73 16 7 N -0.88 -24.43 11.32 55.43 0.63 -23.80 16 8 Si 0.89 20.41 29.54 -169.99 -5.02 15.39 16 9 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 10 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 11 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 12 N -0.51 -11.32 5.36 -223.89 -1.20 -12.52 16 13 C 0.04 0.77 5.02 -2.75 -0.01 0.76 16 14 C -0.14 -2.43 6.06 -25.38 -0.15 -2.59 16 15 C 0.11 2.03 1.44 -88.76 -0.13 1.90 16 16 F -0.20 -3.91 16.96 2.25 0.04 -3.87 16 17 C 0.06 0.89 6.18 37.16 0.23 1.12 16 18 O -0.57 -7.60 13.37 -35.23 -0.47 -8.07 16 19 C 0.03 0.50 5.54 -1.90 -0.01 0.49 16 20 H 0.02 0.36 8.14 -51.93 -0.42 -0.07 16 21 H 0.08 2.24 6.07 -51.93 -0.32 1.93 16 22 H 0.03 0.64 6.77 -51.93 -0.35 0.29 16 23 H 0.26 6.90 8.31 -40.82 -0.34 6.56 16 24 H 0.06 1.37 6.17 -51.93 -0.32 1.05 16 25 H 0.06 1.25 8.14 -51.93 -0.42 0.82 16 26 H 0.07 1.22 7.85 -51.93 -0.41 0.81 16 27 H 0.07 1.27 8.12 -51.93 -0.42 0.85 16 28 H 0.07 0.85 8.12 -51.93 -0.42 0.43 16 29 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 30 H 0.38 3.00 9.12 45.56 0.42 3.41 16 31 H 0.08 1.52 8.14 -51.93 -0.42 1.10 16 32 H 0.08 1.66 5.60 -51.93 -0.29 1.37 16 LS Contribution 258.01 15.07 3.89 3.89 Total: -1.00 -29.34 258.01 -6.06 -35.40 By element: Atomic # 1 Polarization: 6.38 SS G_CDS: -3.68 Total: 2.71 kcal Atomic # 6 Polarization: -8.87 SS G_CDS: -0.24 Total: -9.11 kcal Atomic # 7 Polarization: -35.75 SS G_CDS: -0.57 Total: -36.33 kcal Atomic # 8 Polarization: -7.60 SS G_CDS: -0.47 Total: -8.07 kcal Atomic # 9 Polarization: -3.91 SS G_CDS: 0.04 Total: -3.87 kcal Atomic # 14 Polarization: 20.41 SS G_CDS: -5.02 Total: 15.39 kcal Total LS contribution 3.89 Total: 3.89 kcal Total: -29.34 -6.06 -35.40 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307753297.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.088 kcal (2) G-P(sol) polarization free energy of solvation -29.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.396 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds