Wall clock time and date at job start Mon Mar 30 2020 02:21:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09003 * 109.47414 * 2 1 4 4 C 1.50699 * 109.47162 * 239.99865 * 2 1 3 5 5 H 1.08002 * 120.00325 * 239.99820 * 4 2 1 6 6 C 1.37878 * 120.00100 * 60.00526 * 4 2 1 7 7 N 1.31515 * 119.99523 * 359.97438 * 6 4 2 8 8 Si 1.86799 * 120.00148 * 180.02562 * 6 4 2 9 9 H 1.48504 * 109.47112 * 359.97438 * 8 6 4 10 10 H 1.48500 * 109.47301 * 119.99725 * 8 6 4 11 11 H 1.48499 * 109.46992 * 239.99824 * 8 6 4 12 12 N 1.46900 * 109.47181 * 120.00072 * 2 1 3 13 13 C 1.47907 * 110.99845 * 55.12410 * 12 2 1 14 14 C 1.53990 * 107.05675 * 145.84878 * 13 12 2 15 15 C 1.54597 * 105.14143 * 358.77466 * 14 13 12 16 16 F 1.39903 * 110.72724 * 96.40063 * 15 14 13 17 17 C 1.52999 * 110.72690 * 219.68730 * 15 14 13 18 18 O 1.42899 * 109.46814 * 298.54729 * 17 15 14 19 19 C 1.48529 * 111.00554 * 172.52247 * 12 2 1 20 20 H 1.08997 * 109.47143 * 300.00424 * 1 2 3 21 21 H 1.09002 * 109.46863 * 60.00134 * 1 2 3 22 22 H 1.09003 * 109.47414 * 180.02562 * 1 2 3 23 23 H 0.97008 * 119.99850 * 180.02562 * 7 6 4 24 24 H 1.08996 * 109.91720 * 26.48982 * 13 12 2 25 25 H 1.09004 * 110.07880 * 265.28981 * 13 12 2 26 26 H 1.09005 * 110.30685 * 239.86077 * 14 13 12 27 27 H 1.09003 * 110.39778 * 117.73322 * 14 13 12 28 28 H 1.08999 * 109.47130 * 58.54299 * 17 15 14 29 29 H 1.08997 * 109.47554 * 178.54680 * 17 15 14 30 30 H 0.96710 * 114.00096 * 179.97438 * 18 17 15 31 31 H 1.09002 * 110.67056 * 81.84058 * 19 12 2 32 32 H 1.08999 * 110.66437 * 318.71748 * 19 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1314 6 6 1.6993 -0.2394 -2.4827 7 7 0.9429 0.8297 -2.6033 8 14 2.3214 -1.1204 -4.0079 9 1 3.1464 -2.2871 -3.6037 10 1 1.1661 -1.5867 -4.8161 11 1 3.1467 -0.1874 -4.8164 12 7 2.0196 -0.6925 1.1994 13 6 1.4519 -2.0550 1.2937 14 6 2.5323 -2.9517 1.9261 15 6 3.7471 -2.0226 2.1515 16 9 3.7644 -1.5397 3.4645 17 6 5.0529 -2.7493 1.8232 18 8 5.2019 -3.8758 2.6897 19 6 3.4933 -0.8706 1.1470 20 1 -0.3633 0.5139 0.8899 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3634 -1.0277 0.0005 23 1 0.7083 1.1610 -3.4844 24 1 1.2003 -2.4221 0.2987 25 1 0.5615 -2.0467 1.9224 26 1 2.7967 -3.7621 1.2467 27 1 2.1828 -3.3548 2.8767 28 1 5.0296 -3.0882 0.7875 29 1 5.8927 -2.0690 1.9640 30 1 6.0099 -4.3850 2.5375 31 1 4.0024 0.0384 1.4675 32 1 3.8107 -1.1574 0.1445 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307753297.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:21:58 Heat of formation + Delta-G solvation = -116.757310 kcal Electronic energy + Delta-G solvation = -15625.260397 eV Core-core repulsion = 12920.249476 eV Total energy + Delta-G solvation = -2705.010921 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 217.122 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -48.53359 -39.86867 -37.69963 -35.40972 -33.07946 -30.41459 -29.81460 -27.24667 -25.69944 -23.67834 -21.56176 -20.76207 -18.57552 -18.28314 -17.41619 -17.18832 -16.34268 -15.77893 -15.47114 -15.40378 -15.00420 -14.68974 -14.05337 -13.85734 -13.46778 -13.39934 -12.92208 -12.69205 -12.50695 -12.22335 -12.09245 -11.94405 -11.87785 -11.54354 -11.48932 -11.19226 -11.00293 -10.50421 -9.07910 -8.06309 -6.28021 1.39330 1.42362 1.51475 2.40273 2.93454 3.15609 3.29020 3.58703 3.61208 3.81088 4.07909 4.32224 4.35431 4.57345 4.59043 4.79305 4.85666 4.90111 5.03498 5.03934 5.09914 5.19634 5.30990 5.51622 5.65187 5.92347 6.09171 6.28975 6.40058 6.85899 6.89889 7.42829 8.92082 Molecular weight = 217.12amu Principal moments of inertia in cm(-1) A = 0.034670 B = 0.009809 C = 0.008416 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 807.431193 B = 2853.739992 C = 3326.003059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.201 3.799 3 H 0.007 0.993 4 C -0.548 4.548 5 H 0.064 0.936 6 C 0.019 3.981 7 N -0.914 5.914 8 Si 0.952 3.048 9 H -0.263 1.263 10 H -0.284 1.284 11 H -0.283 1.283 12 N -0.526 5.526 13 C 0.040 3.960 14 C -0.131 4.131 15 C 0.112 3.888 16 F -0.212 7.212 17 C 0.071 3.929 18 O -0.581 6.581 19 C 0.024 3.976 20 H 0.024 0.976 21 H 0.062 0.938 22 H 0.033 0.967 23 H 0.262 0.738 24 H 0.048 0.952 25 H 0.067 0.933 26 H 0.092 0.908 27 H 0.082 0.918 28 H 0.080 0.920 29 H 0.071 0.929 30 H 0.402 0.598 31 H 0.076 0.924 32 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.252 -8.378 5.219 12.248 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.093 3.907 3 H 0.025 0.975 4 C -0.587 4.587 5 H 0.082 0.918 6 C -0.181 4.181 7 N -0.554 5.554 8 Si 0.778 3.222 9 H -0.187 1.187 10 H -0.210 1.210 11 H -0.209 1.209 12 N -0.250 5.250 13 C -0.089 4.089 14 C -0.170 4.170 15 C 0.093 3.907 16 F -0.192 7.192 17 C -0.008 4.008 18 O -0.390 6.390 19 C -0.104 4.104 20 H 0.043 0.957 21 H 0.081 0.919 22 H 0.052 0.948 23 H 0.071 0.929 24 H 0.067 0.933 25 H 0.086 0.914 26 H 0.111 0.889 27 H 0.101 0.899 28 H 0.098 0.902 29 H 0.089 0.911 30 H 0.253 0.747 31 H 0.094 0.906 32 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 6.435 -7.702 5.794 11.589 hybrid contribution 0.702 -0.513 -1.793 1.993 sum 7.137 -8.216 4.001 11.595 Atomic orbital electron populations 1.21651 0.97329 0.99344 0.99695 1.19222 0.92742 0.93133 0.85579 0.97543 1.21899 1.31845 1.12886 0.92054 0.91828 1.25692 0.95040 0.95508 1.01857 1.70027 1.37251 1.24013 1.24061 0.85593 0.78123 0.78798 0.79653 1.18709 1.20989 1.20896 1.65109 1.04289 1.16272 1.39351 1.22747 0.97651 0.88739 0.99722 1.22870 0.93925 0.97725 1.02446 1.21972 0.96862 0.93928 0.77909 1.92794 1.97654 1.89740 1.39050 1.22535 0.95224 0.88526 0.94502 1.86456 1.48842 1.42565 1.61105 1.23630 0.91266 0.97215 0.98317 0.95716 0.91949 0.94764 0.92872 0.93321 0.91425 0.88928 0.89945 0.90219 0.91099 0.74740 0.90566 0.90564 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.99 8.77 71.98 0.63 -5.36 16 2 C 0.20 10.11 2.55 44.17 0.11 10.22 16 3 H 0.01 0.38 8.14 -2.39 -0.02 0.36 16 4 C -0.55 -28.23 6.43 25.60 0.16 -28.06 16 5 H 0.06 3.16 5.99 -2.91 -0.02 3.14 16 6 C 0.02 1.00 5.30 84.65 0.45 1.45 16 7 N -0.91 -51.25 11.32 21.45 0.24 -51.00 16 8 Si 0.95 41.44 29.54 68.60 2.03 43.47 16 9 H -0.26 -10.86 7.11 99.48 0.71 -10.15 16 10 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 11 H -0.28 -12.23 7.11 99.48 0.71 -11.52 16 12 N -0.53 -23.06 5.36 -862.25 -4.62 -27.68 16 13 C 0.04 1.54 5.02 86.44 0.43 1.97 16 14 C -0.13 -4.29 6.06 31.47 0.19 -4.10 16 15 C 0.11 3.73 1.44 -9.59 -0.01 3.71 16 16 F -0.21 -7.96 16.96 44.97 0.76 -7.20 16 17 C 0.07 1.77 6.18 71.98 0.44 2.21 16 18 O -0.58 -13.51 13.37 -148.98 -1.99 -15.51 16 19 C 0.02 0.94 5.54 86.65 0.48 1.42 16 20 H 0.02 1.11 8.14 -2.39 -0.02 1.09 16 21 H 0.06 3.35 6.07 -2.39 -0.01 3.34 16 22 H 0.03 1.58 6.77 -2.39 -0.02 1.57 16 23 H 0.26 13.97 8.31 -92.70 -0.77 13.20 16 24 H 0.05 2.03 6.17 -2.39 -0.01 2.02 16 25 H 0.07 2.54 8.14 -2.38 -0.02 2.52 16 26 H 0.09 2.71 7.85 -2.38 -0.02 2.69 16 27 H 0.08 2.58 8.12 -2.39 -0.02 2.56 16 28 H 0.08 1.78 8.12 -2.39 -0.02 1.76 16 29 H 0.07 1.56 8.14 -2.39 -0.02 1.55 16 30 H 0.40 4.83 9.12 -74.05 -0.68 4.16 16 31 H 0.08 2.92 8.14 -2.39 -0.02 2.90 16 32 H 0.08 3.02 5.60 -2.39 -0.01 3.01 16 Total: -1.00 -61.64 258.01 -0.24 -61.89 By element: Atomic # 1 Polarization: 12.13 SS G_CDS: 0.44 Total: 12.57 kcal Atomic # 6 Polarization: -19.43 SS G_CDS: 2.89 Total: -16.53 kcal Atomic # 7 Polarization: -74.31 SS G_CDS: -4.38 Total: -78.69 kcal Atomic # 8 Polarization: -13.51 SS G_CDS: -1.99 Total: -15.51 kcal Atomic # 9 Polarization: -7.96 SS G_CDS: 0.76 Total: -7.20 kcal Atomic # 14 Polarization: 41.44 SS G_CDS: 2.03 Total: 43.47 kcal Total: -61.64 -0.24 -61.89 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307753297.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.870 kcal (2) G-P(sol) polarization free energy of solvation -61.643 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.512 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.888 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds