Wall clock time and date at job start Mon Mar 30 2020 02:41:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86799 * 120.00564 * 2 1 4 4 H 1.48501 * 109.46933 * 269.99776 * 3 2 1 5 5 H 1.48500 * 109.47122 * 29.99413 * 3 2 1 6 6 H 1.48502 * 109.47202 * 149.99941 * 3 2 1 7 7 C 1.37885 * 119.99782 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00078 * 179.97438 * 7 2 1 9 9 C 1.50705 * 119.99708 * 0.27981 * 7 2 1 10 10 C 1.50698 * 109.47003 * 179.72075 * 9 7 2 11 11 C 1.38390 * 119.76666 * 269.72851 * 10 9 7 12 12 C 1.38250 * 120.46855 * 179.72130 * 11 10 9 13 13 C 1.39396 * 119.99391 * 0.55192 * 12 11 10 14 14 C 1.47285 * 120.23353 * 179.70362 * 13 12 11 15 15 O 1.21239 * 119.99909 * 5.17426 * 14 13 12 16 16 C 1.41156 * 119.53382 * 359.72391 * 13 12 11 17 17 C 1.47296 * 120.22766 * 180.02562 * 16 13 12 18 18 O 1.21229 * 119.99970 * 174.80774 * 17 16 13 19 19 C 1.38252 * 119.76523 * 89.99986 * 10 9 7 20 20 H 0.97001 * 119.99544 * 0.02562 * 1 2 3 21 21 H 1.08995 * 109.46997 * 299.72436 * 9 7 2 22 22 H 1.09000 * 109.47196 * 59.71976 * 9 7 2 23 23 H 1.08001 * 119.76502 * 0.02562 * 11 10 9 24 24 H 1.08000 * 120.00073 * 180.25029 * 12 11 10 25 25 H 1.07999 * 120.00383 * 185.16876 * 14 13 12 26 26 H 1.08000 * 119.99687 * 354.80259 * 17 16 13 27 27 H 1.08003 * 120.00148 * 359.97438 * 19 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0462 -1.4001 5 1 1.4467 2.6527 0.6999 6 1 3.5468 1.4400 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0844 -1.1942 0.0001 9 6 1.2508 -2.4992 -0.0053 10 6 2.2300 -3.6447 -0.0103 11 6 2.6722 -4.1653 -1.2139 12 6 3.5748 -5.2123 -1.2355 13 6 4.0371 -5.7585 -0.0393 14 6 4.9937 -6.8783 -0.0562 15 8 5.4538 -7.2667 -1.1085 16 6 3.5817 -5.2313 1.1883 17 6 4.0607 -5.7964 2.4614 18 8 3.7415 -5.2815 3.5114 19 6 2.6760 -4.1717 1.1875 20 1 -0.4849 0.8401 -0.0004 21 1 0.6241 -2.5608 0.8844 22 1 0.6242 -2.5530 -0.8955 23 1 2.3133 -3.7475 -2.1430 24 1 3.9179 -5.6101 -2.1792 25 1 5.2855 -7.3534 0.8688 26 1 4.6962 -6.6697 2.4594 27 1 2.3230 -3.7622 2.1224 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396091700.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:31 Heat of formation + Delta-G solvation = -72.855976 kcal Electronic energy + Delta-G solvation = -13483.763008 eV Core-core repulsion = 10977.873260 eV Total energy + Delta-G solvation = -2505.889748 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 218.073 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -41.18275 -39.77921 -38.96775 -35.55785 -33.51537 -32.23028 -29.65448 -26.27510 -25.95503 -23.88651 -22.20602 -21.03159 -18.62685 -18.38515 -17.40742 -16.99129 -16.42430 -15.97493 -15.64884 -15.42037 -14.97505 -14.89144 -14.82659 -14.53485 -13.63409 -13.34948 -13.08005 -12.68507 -12.58288 -12.33622 -11.69236 -11.61747 -11.10847 -10.66542 -10.49569 -10.01062 -9.69697 -8.26977 -6.40379 -0.63311 0.05995 1.37213 1.38428 1.46712 1.48856 1.54792 2.36167 2.89807 3.05095 3.14230 3.34652 3.80864 3.89969 4.23503 4.32433 4.48138 4.54460 4.79896 4.90239 5.13605 5.19349 5.25468 5.34997 5.66482 5.80554 5.84913 6.08137 6.36977 6.50744 6.71583 7.28847 8.82941 Molecular weight = 218.07amu Principal moments of inertia in cm(-1) A = 0.033790 B = 0.007170 C = 0.006572 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 828.459509 B = 3904.094477 C = 4259.494341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.008 3.992 3 Si 0.965 3.035 4 H -0.269 1.269 5 H -0.279 1.279 6 H -0.267 1.267 7 C -0.534 4.534 8 H 0.055 0.945 9 C 0.050 3.950 10 C -0.042 4.042 11 C -0.113 4.113 12 C -0.072 4.072 13 C -0.165 4.165 14 C 0.396 3.604 15 O -0.491 6.491 16 C -0.142 4.142 17 C 0.390 3.610 18 O -0.493 6.493 19 C -0.096 4.096 20 H 0.267 0.733 21 H 0.006 0.994 22 H 0.013 0.987 23 H 0.129 0.871 24 H 0.148 0.852 25 H 0.170 0.830 26 H 0.179 0.821 27 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.229 -12.905 1.082 15.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.191 4.191 3 Si 0.789 3.211 4 H -0.194 1.194 5 H -0.205 1.205 6 H -0.192 1.192 7 C -0.572 4.572 8 H 0.073 0.927 9 C 0.013 3.987 10 C -0.042 4.042 11 C -0.131 4.131 12 C -0.090 4.090 13 C -0.166 4.166 14 C 0.257 3.743 15 O -0.365 6.365 16 C -0.143 4.143 17 C 0.250 3.750 18 O -0.367 6.367 19 C -0.114 4.114 20 H 0.076 0.924 21 H 0.024 0.976 22 H 0.032 0.968 23 H 0.147 0.853 24 H 0.166 0.834 25 H 0.185 0.815 26 H 0.194 0.806 27 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 9.154 -12.733 1.090 15.720 hybrid contribution -0.478 1.551 -0.210 1.636 sum 8.677 -11.183 0.880 14.181 Atomic orbital electron populations 1.70062 1.07635 1.28137 1.50803 1.25900 0.95768 1.03093 0.94348 0.85440 0.78550 0.78383 0.78678 1.19437 1.20471 1.19174 1.21324 0.93083 0.91077 1.51677 0.92678 1.18214 0.92961 0.90942 0.96572 1.20659 0.95738 0.94225 0.93597 1.21389 0.97553 0.96374 0.97834 1.21580 0.94261 0.94051 0.99116 1.21242 1.02121 1.01002 0.92241 1.24728 0.75668 0.79407 0.94499 1.90528 1.48205 1.59822 1.37992 1.21316 0.98873 0.97534 0.96597 1.24960 0.78352 0.87265 0.84420 1.90552 1.50564 1.60181 1.35446 1.21344 0.96875 0.95441 0.97755 0.92404 0.97557 0.96826 0.85326 0.83409 0.81469 0.80559 0.86735 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.12 13.29 21.45 0.28 -54.84 15 2 C 0.01 0.44 5.46 84.66 0.46 0.90 15 3 Si 0.97 43.87 29.54 68.60 2.03 45.89 15 4 H -0.27 -11.74 7.11 99.48 0.71 -11.04 15 5 H -0.28 -12.38 7.11 99.48 0.71 -11.67 15 6 H -0.27 -11.82 7.11 99.48 0.71 -11.11 15 7 C -0.53 -29.99 9.10 25.60 0.23 -29.75 15 8 H 0.05 3.05 7.74 -2.91 -0.02 3.02 15 9 C 0.05 2.60 5.09 29.10 0.15 2.75 15 10 C -0.04 -1.76 5.07 -19.83 -0.10 -1.86 15 11 C -0.11 -4.04 9.67 22.31 0.22 -3.82 15 12 C -0.07 -2.07 9.59 22.55 0.22 -1.86 15 13 C -0.16 -4.01 5.90 -19.90 -0.12 -4.13 15 14 C 0.40 6.63 11.02 70.20 0.77 7.41 15 15 O -0.49 -11.98 17.18 -2.90 -0.05 -12.03 15 16 C -0.14 -3.88 5.90 -19.90 -0.12 -4.00 15 17 C 0.39 7.95 11.02 70.20 0.77 8.72 15 18 O -0.49 -15.01 17.18 -2.87 -0.05 -15.06 15 19 C -0.10 -3.61 9.23 22.55 0.21 -3.40 15 20 H 0.27 14.89 8.31 -92.71 -0.77 14.12 15 21 H 0.01 0.34 8.08 -2.39 -0.02 0.33 15 22 H 0.01 0.74 8.08 -2.39 -0.02 0.72 15 23 H 0.13 4.48 8.06 -2.91 -0.02 4.45 15 24 H 0.15 3.73 7.65 -2.91 -0.02 3.71 15 25 H 0.17 0.72 6.27 -2.91 -0.02 0.70 15 26 H 0.18 1.04 6.27 -2.91 -0.02 1.03 15 27 H 0.11 4.70 7.65 -2.91 -0.02 4.68 15 Total: -1.00 -72.23 253.65 6.09 -66.14 By element: Atomic # 1 Polarization: -2.25 SS G_CDS: 1.18 Total: -1.07 kcal Atomic # 6 Polarization: -31.73 SS G_CDS: 2.70 Total: -29.04 kcal Atomic # 7 Polarization: -55.12 SS G_CDS: 0.28 Total: -54.84 kcal Atomic # 8 Polarization: -26.99 SS G_CDS: -0.10 Total: -27.09 kcal Atomic # 14 Polarization: 43.87 SS G_CDS: 2.03 Total: 45.89 kcal Total: -72.23 6.09 -66.14 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396091700.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.715 kcal (2) G-P(sol) polarization free energy of solvation -72.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.948 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.141 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds