Wall clock time and date at job start Mon Mar 30 2020 02:42:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86792 * 120.00200 * 2 1 4 4 H 1.48505 * 109.47363 * 270.00032 * 3 2 1 5 5 H 1.48502 * 109.47480 * 29.99978 * 3 2 1 6 6 H 1.48498 * 109.47279 * 149.99815 * 3 2 1 7 7 C 1.37878 * 119.99685 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99825 * 0.27119 * 7 2 1 9 9 C 1.50696 * 119.99947 * 179.97438 * 7 2 1 10 10 C 1.50699 * 109.47402 * 179.97438 * 9 7 2 11 11 C 1.38067 * 119.91204 * 100.84589 * 10 9 7 12 12 C 1.38031 * 120.35569 * 179.76975 * 11 10 9 13 13 C 1.40005 * 120.17123 * 0.50635 * 12 11 10 14 14 C 1.47188 * 120.08859 * 179.76878 * 13 12 11 15 15 O 1.21254 * 120.00291 * 179.97438 * 14 13 12 16 16 C 1.39512 * 119.82622 * 359.75101 * 13 12 11 17 17 C 1.39556 * 119.64890 * 359.97438 * 16 13 12 18 18 C 1.47192 * 120.08713 * 179.97438 * 17 16 13 19 19 O 1.21254 * 119.99780 * 185.33151 * 18 17 16 20 20 H 0.97001 * 119.99790 * 359.97438 * 1 2 3 21 21 H 1.08999 * 109.47173 * 300.00434 * 9 7 2 22 22 H 1.09010 * 109.47018 * 59.99705 * 9 7 2 23 23 H 1.08004 * 119.82388 * 359.97438 * 11 10 9 24 24 H 1.08000 * 119.91162 * 180.25894 * 12 11 10 25 25 H 1.08007 * 120.00041 * 359.97438 * 14 13 12 26 26 H 1.07995 * 120.17842 * 180.02562 * 16 13 12 27 27 H 1.08003 * 120.00012 * 5.33531 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0464 -1.4001 5 1 1.4468 2.6527 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1293 -0.0054 9 6 3.5115 -1.1942 -0.0011 10 6 4.0138 -2.6150 -0.0010 11 6 4.4552 -3.1893 -1.1764 12 6 4.9216 -4.4884 -1.1859 13 6 4.9406 -5.2378 -0.0035 14 6 5.4336 -6.6246 -0.0167 15 8 5.4498 -7.2721 1.0084 16 6 4.4914 -4.6666 1.1874 17 6 4.0267 -3.3507 1.1897 18 6 3.5500 -2.7386 2.4405 19 8 3.0572 -1.6308 2.4241 20 1 -0.4850 0.8401 0.0004 21 1 3.8745 -0.6801 -0.8911 22 1 3.8752 -0.6805 0.8889 23 1 4.4385 -2.6179 -2.0928 24 1 5.2690 -4.9291 -2.1086 25 1 5.7809 -7.0656 -0.9395 26 1 4.5039 -5.2394 2.1029 27 1 3.6392 -3.2762 3.3730 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396113820.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:26 Heat of formation + Delta-G solvation = -39.576591 kcal Electronic energy + Delta-G solvation = -13839.119866 eV Core-core repulsion = 11334.673220 eV Total energy + Delta-G solvation = -2504.446646 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 218.073 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.82464 -38.63367 -37.15916 -33.44213 -31.65778 -31.15101 -28.36591 -24.46087 -24.31505 -21.72081 -21.35234 -19.57181 -17.00759 -16.79982 -15.91861 -15.30060 -15.12403 -14.33021 -14.19583 -13.87823 -13.70708 -13.44158 -13.27353 -12.49924 -12.04496 -11.70862 -11.61403 -11.21126 -10.58512 -10.29209 -10.04994 -9.76506 -9.41095 -8.74234 -8.69897 -8.48734 -8.23840 -6.02270 -3.98135 0.87584 1.23890 2.53495 3.12680 3.31934 3.40078 3.44755 4.19397 4.29290 4.47727 4.74206 5.02774 5.14139 5.29554 5.35987 5.54498 5.65359 5.93387 6.10641 6.20518 6.41601 6.61744 6.65887 6.95698 7.17338 7.36337 7.46132 7.71976 8.19279 8.48541 8.97825 9.58507 11.11094 Molecular weight = 218.07amu Principal moments of inertia in cm(-1) A = 0.046739 B = 0.008016 C = 0.007522 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 598.922369 B = 3492.313516 C = 3721.409591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.074 3.926 3 Si 0.879 3.121 4 H -0.279 1.279 5 H -0.287 1.287 6 H -0.265 1.265 7 C -0.486 4.486 8 H 0.068 0.932 9 C 0.003 3.997 10 C 0.058 3.942 11 C -0.154 4.154 12 C -0.043 4.043 13 C -0.237 4.237 14 C 0.389 3.611 15 O -0.475 6.475 16 C -0.012 4.012 17 C -0.202 4.202 18 C 0.351 3.649 19 O -0.399 6.399 20 H 0.263 0.737 21 H 0.019 0.981 22 H 0.057 0.943 23 H 0.131 0.869 24 H 0.128 0.872 25 H 0.099 0.901 26 H 0.133 0.867 27 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.384 -8.453 -1.196 14.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.127 4.127 3 Si 0.706 3.294 4 H -0.205 1.205 5 H -0.213 1.213 6 H -0.190 1.190 7 C -0.524 4.524 8 H 0.086 0.914 9 C -0.034 4.034 10 C 0.058 3.942 11 C -0.172 4.172 12 C -0.061 4.061 13 C -0.238 4.238 14 C 0.249 3.751 15 O -0.350 6.350 16 C -0.031 4.031 17 C -0.203 4.203 18 C 0.206 3.794 19 O -0.268 6.268 20 H 0.073 0.927 21 H 0.037 0.963 22 H 0.074 0.926 23 H 0.149 0.851 24 H 0.146 0.854 25 H 0.115 0.885 26 H 0.151 0.849 27 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 10.954 -8.058 -0.651 13.614 hybrid contribution 0.287 0.791 -0.238 0.874 sum 11.241 -7.268 -0.890 13.415 Atomic orbital electron populations 1.69886 1.06240 1.26853 1.51141 1.24859 0.94618 0.98847 0.94412 0.86790 0.80639 0.83809 0.78123 1.20490 1.21327 1.18951 1.20532 0.87136 0.94427 1.50306 0.91367 1.19183 0.98264 0.87782 0.98148 1.20984 0.84755 0.97646 0.90852 1.21117 1.02050 0.95428 0.98594 1.21475 0.94213 0.93774 0.96657 1.20631 1.10380 0.97814 0.95019 1.23963 0.72916 0.85987 0.92213 1.90493 1.43976 1.62942 1.37544 1.21550 0.90749 0.93191 0.97570 1.20883 1.06748 0.95304 0.97372 1.23735 0.76624 0.87958 0.91050 1.90704 1.28340 1.19388 1.88322 0.92709 0.96251 0.92573 0.85123 0.85423 0.88452 0.84915 0.89513 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.06 13.96 55.43 0.77 -27.29 15 2 C 0.07 2.16 5.47 -17.82 -0.10 2.07 15 3 Si 0.88 22.06 27.47 -169.99 -4.67 17.39 15 4 H -0.28 -6.75 7.11 56.52 0.40 -6.34 15 5 H -0.29 -7.21 7.11 56.52 0.40 -6.81 15 6 H -0.26 -6.46 6.54 56.52 0.37 -6.09 15 7 C -0.49 -13.76 8.03 -34.44 -0.28 -14.04 15 8 H 0.07 2.12 7.98 -52.49 -0.42 1.70 15 9 C 0.00 0.07 3.47 -29.04 -0.10 -0.03 15 10 C 0.06 1.15 5.13 -104.04 -0.53 0.62 15 11 C -0.15 -2.51 9.63 -39.72 -0.38 -2.89 15 12 C -0.04 -0.55 9.79 -39.00 -0.38 -0.94 15 13 C -0.24 -3.21 5.86 -105.13 -0.62 -3.83 15 14 C 0.39 4.49 11.45 34.37 0.39 4.88 15 15 O -0.47 -7.11 17.16 5.58 0.10 -7.01 15 16 C -0.01 -0.18 9.34 -38.62 -0.36 -0.54 15 17 C -0.20 -3.64 5.85 -105.12 -0.62 -4.25 15 18 C 0.35 6.39 11.38 34.37 0.39 6.78 15 19 O -0.40 -9.27 13.00 5.58 0.07 -9.20 15 20 H 0.26 7.68 8.31 -40.82 -0.34 7.34 15 21 H 0.02 0.44 7.41 -51.93 -0.38 0.06 15 22 H 0.06 1.40 5.22 -51.92 -0.27 1.13 15 23 H 0.13 1.96 8.02 -52.48 -0.42 1.54 15 24 H 0.13 1.14 8.06 -52.49 -0.42 0.71 15 25 H 0.10 0.71 8.06 -52.48 -0.42 0.29 15 26 H 0.13 1.78 7.64 -52.49 -0.40 1.38 15 27 H 0.09 1.17 8.06 -52.48 -0.42 0.75 15 LS Contribution 246.49 15.07 3.71 3.71 Total: -1.00 -34.00 246.49 -4.92 -38.93 By element: Atomic # 1 Polarization: -2.02 SS G_CDS: -2.33 Total: -4.35 kcal Atomic # 6 Polarization: -9.60 SS G_CDS: -2.58 Total: -12.18 kcal Atomic # 7 Polarization: -28.06 SS G_CDS: 0.77 Total: -27.29 kcal Atomic # 8 Polarization: -16.38 SS G_CDS: 0.17 Total: -16.21 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -4.67 Total: 17.39 kcal Total LS contribution 3.71 Total: 3.71 kcal Total: -34.00 -4.92 -38.93 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396113820.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.651 kcal (2) G-P(sol) polarization free energy of solvation -34.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.924 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.926 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds