Wall clock time and date at job start Mon Mar 30 2020 02:42:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86803 * 119.99838 * 2 1 4 4 H 1.48499 * 109.46455 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.46936 * 299.99520 * 3 2 1 6 6 H 1.48499 * 109.47169 * 60.00221 * 3 2 1 7 7 C 1.37875 * 119.99967 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00217 * 179.97438 * 7 2 1 9 9 C 1.50704 * 119.99984 * 0.02562 * 7 2 1 10 10 C 1.50695 * 109.47151 * 179.97438 * 9 7 2 11 11 C 1.37757 * 120.00145 * 100.84792 * 10 9 7 12 12 C 1.39794 * 119.99877 * 179.72663 * 11 10 9 13 13 C 1.47428 * 119.99621 * 180.27696 * 12 11 10 14 14 O 1.21223 * 119.99639 * 180.28888 * 13 12 11 15 15 C 1.39829 * 120.00157 * 0.56918 * 12 11 10 16 16 C 1.37714 * 119.99876 * 359.70484 * 15 12 11 17 17 C 1.39797 * 119.99872 * 281.12181 * 10 9 7 18 18 C 1.47428 * 120.00353 * 0.02562 * 17 10 9 19 19 O 1.21213 * 120.00029 * 5.30870 * 18 17 10 20 20 H 0.97002 * 120.00043 * 359.97438 * 1 2 3 21 21 H 1.08996 * 109.47511 * 300.00323 * 9 7 2 22 22 H 1.09008 * 109.46744 * 59.99890 * 9 7 2 23 23 H 1.07994 * 119.99658 * 359.97438 * 11 10 9 24 24 H 1.07996 * 120.00288 * 0.29462 * 13 12 11 25 25 H 1.08005 * 120.00419 * 179.68675 * 15 12 11 26 26 H 1.08004 * 119.99914 * 179.97438 * 16 15 12 27 27 H 1.08000 * 119.99730 * 185.31367 * 18 17 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8904 2.3965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2302 -3.6446 0.0005 11 6 2.5072 -4.3140 1.1722 12 6 3.4113 -5.3803 1.1711 13 6 3.7030 -6.1006 2.4239 14 8 4.4909 -7.0218 2.4239 15 6 4.0435 -5.7596 -0.0171 16 6 3.7709 -5.0867 -1.1873 17 6 2.8619 -4.0241 -1.1874 18 6 2.5706 -3.3034 -2.4401 19 8 1.8586 -2.3226 -2.4235 20 1 -0.4850 0.8401 0.0004 21 1 0.6239 -2.5567 0.8902 22 1 0.6246 -2.5570 -0.8898 23 1 2.0228 -4.0177 2.0908 24 1 3.2147 -5.8077 3.3415 25 1 4.7458 -6.5801 -0.0170 26 1 4.2595 -5.3795 -2.1049 27 1 2.9915 -3.6495 -3.3726 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396120721.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:22 Heat of formation + Delta-G solvation = -42.258189 kcal Electronic energy + Delta-G solvation = -13818.624448 eV Core-core repulsion = 11314.061519 eV Total energy + Delta-G solvation = -2504.562929 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 218.073 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.74867 -38.63670 -37.08369 -33.40415 -31.37897 -31.32601 -27.35071 -25.59000 -23.25229 -22.16086 -21.40037 -19.34571 -16.66194 -16.52415 -16.25601 -15.38522 -14.84505 -14.48222 -14.17017 -13.75412 -13.66752 -13.39414 -12.64502 -12.26889 -12.16621 -11.73456 -11.33404 -11.05727 -10.69888 -10.53994 -9.80726 -9.63066 -9.47012 -8.71253 -8.63057 -8.29560 -8.10773 -5.98387 -3.97580 0.63128 1.81145 2.33775 3.22893 3.32410 3.39606 3.43158 4.26151 4.36077 4.51185 4.77093 5.07215 5.29983 5.39997 5.40561 5.64656 5.73587 5.97949 6.15980 6.41783 6.58935 6.67791 6.80777 7.26163 7.48660 7.52704 7.75998 7.93152 8.23170 8.34304 9.01490 9.62396 11.13061 Molecular weight = 218.07amu Principal moments of inertia in cm(-1) A = 0.034053 B = 0.008475 C = 0.007527 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 822.047328 B = 3302.951847 C = 3718.869229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.063 3.937 3 Si 0.891 3.109 4 H -0.274 1.274 5 H -0.284 1.284 6 H -0.285 1.285 7 C -0.486 4.486 8 H 0.050 0.950 9 C 0.043 3.957 10 C 0.000 4.000 11 C -0.086 4.086 12 C -0.174 4.174 13 C 0.386 3.614 14 O -0.471 6.471 15 C -0.103 4.103 16 C -0.094 4.094 17 C -0.156 4.156 18 C 0.342 3.658 19 O -0.386 6.386 20 H 0.259 0.741 21 H 0.023 0.977 22 H 0.056 0.944 23 H 0.133 0.867 24 H 0.104 0.896 25 H 0.126 0.874 26 H 0.127 0.873 27 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.395 -9.457 -0.385 10.894 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.138 4.138 3 Si 0.720 3.280 4 H -0.199 1.199 5 H -0.210 1.210 6 H -0.211 1.211 7 C -0.524 4.524 8 H 0.069 0.931 9 C 0.007 3.993 10 C 0.000 4.000 11 C -0.104 4.104 12 C -0.175 4.175 13 C 0.246 3.754 14 O -0.345 6.345 15 C -0.122 4.122 16 C -0.112 4.112 17 C -0.157 4.157 18 C 0.196 3.804 19 O -0.254 6.254 20 H 0.069 0.931 21 H 0.041 0.959 22 H 0.074 0.926 23 H 0.151 0.849 24 H 0.120 0.880 25 H 0.144 0.856 26 H 0.145 0.855 27 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 5.266 -9.275 -0.375 10.672 hybrid contribution 0.540 0.941 -0.027 1.085 sum 5.806 -8.335 -0.403 10.165 Atomic orbital electron populations 1.69948 1.05952 1.26421 1.50832 1.24882 0.94785 0.98881 0.95288 0.86545 0.80035 0.83950 0.77511 1.19912 1.21013 1.21078 1.20767 0.92335 0.89432 1.49910 0.93127 1.18626 0.92583 0.89046 0.99025 1.21083 0.94285 0.94113 0.90561 1.21402 0.96436 0.93678 0.98884 1.21004 1.00963 0.99425 0.96132 1.24218 0.78892 0.80324 0.91982 1.90466 1.29392 1.25864 1.88795 1.21089 0.99430 0.99806 0.91829 1.21226 0.97085 0.94838 0.98058 1.21155 0.99425 0.97979 0.97159 1.23867 0.81076 0.84374 0.91076 1.90759 1.25916 1.20536 1.88227 0.93084 0.95855 0.92607 0.84941 0.87974 0.85583 0.85537 0.89730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.51 13.29 55.43 0.74 -25.77 15 2 C 0.06 1.78 5.46 -17.82 -0.10 1.69 15 3 Si 0.89 21.88 29.54 -169.99 -5.02 16.85 15 4 H -0.27 -6.63 7.11 56.52 0.40 -6.23 15 5 H -0.28 -6.98 7.11 56.52 0.40 -6.58 15 6 H -0.28 -6.84 7.11 56.52 0.40 -6.44 15 7 C -0.49 -13.42 7.47 -34.44 -0.26 -13.68 15 8 H 0.05 1.41 7.74 -52.49 -0.41 1.00 15 9 C 0.04 1.09 4.40 -29.04 -0.13 0.96 15 10 C 0.00 0.00 5.11 -104.22 -0.53 -0.53 15 11 C -0.09 -1.46 9.39 -39.18 -0.37 -1.83 15 12 C -0.17 -2.63 5.87 -104.98 -0.62 -3.25 15 13 C 0.39 5.06 11.46 34.47 0.40 5.46 15 14 O -0.47 -7.45 17.15 5.61 0.10 -7.36 15 15 C -0.10 -1.51 9.58 -39.18 -0.38 -1.89 15 16 C -0.09 -1.35 9.77 -39.18 -0.38 -1.73 15 17 C -0.16 -2.78 5.86 -104.97 -0.62 -3.40 15 18 C 0.34 6.06 11.38 34.47 0.39 6.45 15 19 O -0.39 -8.97 13.00 5.62 0.07 -8.89 15 20 H 0.26 7.30 8.31 -40.82 -0.34 6.96 15 21 H 0.02 0.60 7.99 -51.93 -0.41 0.19 15 22 H 0.06 1.53 6.16 -51.92 -0.32 1.21 15 23 H 0.13 2.03 8.03 -52.49 -0.42 1.61 15 24 H 0.10 0.97 8.06 -52.49 -0.42 0.55 15 25 H 0.13 1.68 7.64 -52.48 -0.40 1.28 15 26 H 0.13 1.37 8.06 -52.48 -0.42 0.94 15 27 H 0.09 1.08 8.06 -52.49 -0.42 0.65 15 LS Contribution 250.09 15.07 3.77 3.77 Total: -1.00 -32.71 250.09 -5.30 -38.01 By element: Atomic # 1 Polarization: -2.50 SS G_CDS: -2.37 Total: -4.86 kcal Atomic # 6 Polarization: -9.17 SS G_CDS: -2.59 Total: -11.75 kcal Atomic # 7 Polarization: -26.51 SS G_CDS: 0.74 Total: -25.77 kcal Atomic # 8 Polarization: -16.42 SS G_CDS: 0.17 Total: -16.25 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 3.77 Total: 3.77 kcal Total: -32.71 -5.30 -38.01 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396120721.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.247 kcal (2) G-P(sol) polarization free energy of solvation -32.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.960 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.299 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.011 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.258 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds