Wall clock time and date at job start Mon Mar 30 2020 02:42:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86803 * 120.00254 * 2 1 4 4 H 1.48493 * 109.47331 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.46733 * 299.99555 * 3 2 1 6 6 H 1.48502 * 109.47200 * 59.99738 * 3 2 1 7 7 C 1.37884 * 120.00112 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00302 * 180.02562 * 7 2 1 9 9 C 1.50698 * 119.99611 * 0.02562 * 7 2 1 10 10 C 1.50704 * 109.46942 * 180.02562 * 9 7 2 11 11 C 1.39535 * 120.17166 * 267.68897 * 10 9 7 12 12 C 1.47187 * 120.08919 * 359.69703 * 11 10 9 13 13 O 1.21253 * 119.99994 * 5.98326 * 12 11 10 14 14 C 1.39988 * 119.82428 * 179.97438 * 11 10 9 15 15 C 1.38050 * 120.17246 * 359.97438 * 14 11 10 16 16 C 1.38051 * 120.35437 * 0.02562 * 15 14 11 17 17 C 1.39530 * 120.17909 * 87.66274 * 10 9 7 18 18 C 1.47194 * 120.08796 * 0.02562 * 17 10 9 19 19 O 1.21256 * 119.99921 * 354.14878 * 18 17 10 20 20 H 0.97005 * 120.00183 * 0.02562 * 1 2 3 21 21 H 1.08995 * 109.47476 * 59.99790 * 9 7 2 22 22 H 1.09002 * 109.46764 * 299.99503 * 9 7 2 23 23 H 1.07995 * 120.00184 * 185.97455 * 12 11 10 24 24 H 1.07993 * 119.91352 * 179.97438 * 14 11 10 25 25 H 1.08001 * 119.82596 * 180.02562 * 15 14 11 26 26 H 1.08007 * 119.91117 * 179.97438 * 16 15 14 27 27 H 1.07993 * 120.00226 * 174.15926 * 18 17 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8905 2.3963 -1.2126 6 1 1.8904 2.3965 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 6 2.2303 -3.6446 0.0018 11 6 2.6499 -4.2098 -1.2029 12 6 2.1322 -3.6933 -2.4803 13 8 1.4259 -2.7078 -2.4941 14 6 3.5602 -5.2733 -1.1933 15 6 4.0430 -5.7625 0.0039 16 6 3.6327 -5.2088 1.2001 17 6 2.7225 -4.1453 1.2076 18 6 2.2863 -3.5563 2.4841 19 8 1.5827 -2.5688 2.4871 20 1 -0.4850 0.8401 -0.0004 21 1 0.6246 -2.5571 -0.8896 22 1 0.6240 -2.5566 0.8904 23 1 2.3815 -4.1919 -3.4052 24 1 3.8857 -5.7120 -2.1249 25 1 4.7454 -6.5829 0.0048 26 1 4.0146 -5.5975 2.1326 27 1 2.5931 -4.0036 3.4180 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396122814.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:23 Heat of formation + Delta-G solvation = -51.896904 kcal Electronic energy + Delta-G solvation = -14272.575295 eV Core-core repulsion = 11767.594401 eV Total energy + Delta-G solvation = -2504.980895 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 218.073 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -41.11767 -39.66095 -38.36466 -35.23319 -32.89273 -32.52855 -29.29304 -26.19584 -25.35085 -24.08899 -21.59392 -21.29832 -18.54214 -17.64623 -17.28290 -16.82903 -16.18641 -15.96177 -15.64732 -15.35461 -15.06120 -14.63259 -14.37847 -13.83883 -13.17680 -13.15169 -12.88070 -12.64793 -12.58255 -12.43488 -11.68051 -11.45479 -10.61677 -10.40046 -9.81675 -9.59804 -9.50739 -8.08918 -6.12209 -0.23346 0.27872 1.29338 1.32728 1.42976 1.48635 2.02565 2.41614 3.09823 3.26198 3.42559 3.64696 4.14497 4.21191 4.27100 4.47946 4.55432 4.86053 5.09192 5.15888 5.35850 5.43808 5.48929 5.56815 5.87918 6.09710 6.12861 6.29500 6.82621 6.87853 7.07760 7.47291 9.04477 Molecular weight = 218.07amu Principal moments of inertia in cm(-1) A = 0.028634 B = 0.011848 C = 0.009681 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 977.624553 B = 2362.644388 C = 2891.447280 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.003 4.003 3 Si 0.954 3.046 4 H -0.266 1.266 5 H -0.278 1.278 6 H -0.279 1.279 7 C -0.468 4.468 8 H 0.033 0.967 9 C 0.027 3.973 10 C 0.022 3.978 11 C -0.242 4.242 12 C 0.357 3.643 13 O -0.478 6.478 14 C -0.026 4.026 15 C -0.163 4.163 16 C -0.027 4.027 17 C -0.241 4.241 18 C 0.354 3.646 19 O -0.475 6.475 20 H 0.256 0.744 21 H 0.029 0.971 22 H 0.017 0.983 23 H 0.154 0.846 24 H 0.175 0.825 25 H 0.176 0.824 26 H 0.174 0.826 27 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.505 -16.083 -0.060 19.775 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.199 4.199 3 Si 0.780 3.220 4 H -0.190 1.190 5 H -0.204 1.204 6 H -0.205 1.205 7 C -0.507 4.507 8 H 0.051 0.949 9 C -0.009 4.009 10 C 0.021 3.979 11 C -0.243 4.243 12 C 0.217 3.783 13 O -0.352 6.352 14 C -0.044 4.044 15 C -0.180 4.180 16 C -0.044 4.044 17 C -0.242 4.242 18 C 0.214 3.786 19 O -0.349 6.349 20 H 0.065 0.935 21 H 0.046 0.954 22 H 0.035 0.965 23 H 0.169 0.831 24 H 0.193 0.807 25 H 0.193 0.807 26 H 0.192 0.808 27 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 10.612 -14.907 -0.065 18.299 hybrid contribution -0.129 1.247 0.040 1.255 sum 10.484 -13.660 -0.025 17.219 Atomic orbital electron populations 1.70116 1.07604 1.26623 1.53329 1.25771 0.95694 1.02583 0.95824 0.85562 0.78928 0.79876 0.77659 1.19012 1.20372 1.20452 1.20781 0.91136 0.91080 1.47689 0.94887 1.18756 0.94144 0.90624 0.97340 1.21297 0.91712 0.91582 0.93312 1.21149 1.05256 1.02449 0.95421 1.24844 0.76526 0.83364 0.93519 1.90679 1.30042 1.24943 1.89565 1.22000 0.90552 0.90651 1.01172 1.21521 1.02752 1.02619 0.91140 1.22001 0.90857 0.90376 1.01206 1.21163 1.04996 1.02549 0.95457 1.24821 0.77004 0.83053 0.93729 1.90721 1.29516 1.24258 1.90370 0.93537 0.95365 0.96488 0.83074 0.80742 0.80681 0.80827 0.83303 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -64.14 13.29 21.45 0.28 -63.86 15 2 C 0.00 -0.19 5.46 84.66 0.46 0.27 15 3 Si 0.95 50.24 29.54 68.60 2.03 52.27 15 4 H -0.27 -13.34 7.11 99.48 0.71 -12.63 15 5 H -0.28 -14.15 7.11 99.48 0.71 -13.44 15 6 H -0.28 -14.23 7.11 99.48 0.71 -13.52 15 7 C -0.47 -29.90 7.90 25.60 0.20 -29.70 15 8 H 0.03 2.09 7.74 -2.91 -0.02 2.07 15 9 C 0.03 1.63 3.65 29.10 0.11 1.74 15 10 C 0.02 0.98 5.15 -19.24 -0.10 0.88 15 11 C -0.24 -8.61 5.86 -20.19 -0.12 -8.73 15 12 C 0.36 12.97 11.40 70.17 0.80 13.77 15 13 O -0.48 -24.56 13.66 -2.95 -0.04 -24.60 15 14 C -0.03 -0.57 9.79 22.65 0.22 -0.35 15 15 C -0.16 -2.97 10.01 22.18 0.22 -2.74 15 16 C -0.03 -0.59 9.79 22.65 0.22 -0.37 15 17 C -0.24 -8.64 5.86 -20.19 -0.12 -8.75 15 18 C 0.35 13.05 11.40 70.17 0.80 13.85 15 19 O -0.47 -24.66 13.45 -2.96 -0.04 -24.70 15 20 H 0.26 16.51 8.31 -92.70 -0.77 15.74 15 21 H 0.03 1.87 5.17 -3.01 -0.02 1.85 15 22 H 0.02 1.14 5.52 -2.39 -0.01 1.12 15 23 H 0.15 3.33 8.06 -2.91 -0.02 3.31 15 24 H 0.18 2.08 8.06 -2.91 -0.02 2.06 15 25 H 0.18 1.52 8.06 -2.91 -0.02 1.49 15 26 H 0.17 2.13 8.06 -2.91 -0.02 2.11 15 27 H 0.15 3.38 8.06 -2.91 -0.02 3.36 15 Total: -1.00 -93.62 244.55 6.11 -87.50 By element: Atomic # 1 Polarization: -7.66 SS G_CDS: 1.18 Total: -6.48 kcal Atomic # 6 Polarization: -22.83 SS G_CDS: 2.70 Total: -20.13 kcal Atomic # 7 Polarization: -64.14 SS G_CDS: 0.28 Total: -63.86 kcal Atomic # 8 Polarization: -49.21 SS G_CDS: -0.08 Total: -49.29 kcal Atomic # 14 Polarization: 50.24 SS G_CDS: 2.03 Total: 52.27 kcal Total: -93.62 6.11 -87.50 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396122814.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.607 kcal (2) G-P(sol) polarization free energy of solvation -93.616 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.504 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.897 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds