Wall clock time and date at job start Mon Mar 30 2020 02:46:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 F 1.39904 * 109.46852 * 2 1 4 4 F 1.39896 * 109.47585 * 240.00115 * 2 1 3 5 5 C 1.50701 * 109.47339 * 119.99653 * 2 1 3 6 6 N 1.29953 * 126.28663 * 359.97438 * 5 2 1 7 7 O 1.21297 * 110.25127 * 179.97438 * 6 5 2 8 8 C 1.33644 * 109.81253 * 0.02562 * 7 6 5 9 9 C 1.50698 * 126.55335 * 179.97438 * 8 7 6 10 10 C 1.50694 * 109.47166 * 270.02542 * 9 8 7 11 11 H 1.08000 * 120.00563 * 359.97438 * 10 9 8 12 12 C 1.37885 * 119.99902 * 179.97438 * 10 9 8 13 13 N 1.31518 * 119.99792 * 179.72330 * 12 10 9 14 14 Si 1.86795 * 120.00009 * 0.02562 * 12 10 9 15 15 H 1.48501 * 109.47088 * 89.99795 * 14 12 10 16 16 H 1.48495 * 109.47293 * 209.99997 * 14 12 10 17 17 H 1.48507 * 109.47015 * 329.99955 * 14 12 10 18 18 N 1.31136 * 106.89732 * 0.22515 * 8 7 6 19 19 H 1.09002 * 109.47858 * 299.99995 * 1 2 3 20 20 H 1.09002 * 109.47314 * 60.00322 * 1 2 3 21 21 H 1.09008 * 109.47150 * 180.02562 * 1 2 3 22 22 H 1.08998 * 109.46890 * 150.02532 * 9 8 7 23 23 H 1.09002 * 109.46875 * 30.02334 * 9 8 7 24 24 H 0.97000 * 119.99468 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 9 1.9962 1.3191 0.0000 4 9 1.9964 -0.6594 -1.1422 5 6 2.0323 -0.7103 1.2305 6 7 1.3011 -1.2470 2.1611 7 8 2.0057 -1.7412 3.0159 8 6 3.2923 -1.5608 2.7026 9 6 4.4838 -2.0223 3.5015 10 6 4.8810 -0.9459 4.4784 11 1 4.3265 -0.0200 4.5168 12 6 5.9526 -1.1432 5.3234 13 7 6.3026 -0.2016 6.1723 14 14 6.9123 -2.7444 5.2567 15 1 8.0241 -2.6148 4.2809 16 1 7.4663 -3.0458 6.6011 17 1 6.0094 -3.8454 4.8351 18 7 3.3198 -0.9007 1.5698 19 1 -0.3635 0.5138 0.8900 20 1 -0.3634 0.5138 -0.8900 21 1 -0.3634 -1.0277 0.0005 22 1 5.3159 -2.2266 2.8277 23 1 4.2262 -2.9305 4.0464 24 1 7.0563 -0.3405 6.7670 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000401712187.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:46:54 Heat of formation + Delta-G solvation = -57.702367 kcal Electronic energy + Delta-G solvation = -14456.890341 eV Core-core repulsion = 11429.720924 eV Total energy + Delta-G solvation = -3027.169417 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 218.061 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -50.35510 -48.38300 -46.80139 -37.24684 -35.98348 -34.44149 -32.45103 -30.76103 -26.58466 -25.91808 -24.19831 -22.11730 -19.76359 -19.41975 -18.98855 -18.43591 -17.78443 -17.46675 -16.56894 -15.54862 -15.28897 -14.71952 -14.71585 -14.39005 -14.28671 -13.62652 -13.57661 -13.46630 -13.25455 -12.94749 -12.71642 -12.49193 -12.28955 -12.06865 -11.75842 -11.05228 -10.84510 -8.36075 -6.49175 -0.13558 0.87001 1.45067 1.46221 1.55670 1.60941 1.79788 2.34523 2.51043 2.64042 2.99719 3.38493 3.46394 3.68261 4.34738 4.46097 4.49094 4.61008 4.74601 4.85866 4.95119 5.28025 6.05169 6.53637 6.82873 7.14283 8.79956 Molecular weight = 218.06amu Principal moments of inertia in cm(-1) A = 0.053992 B = 0.007179 C = 0.007090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 518.471561 B = 3899.233727 C = 3948.166330 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.397 3.603 3 F -0.188 7.188 4 F -0.183 7.183 5 C 0.087 3.913 6 N -0.356 5.356 7 O 0.082 5.918 8 C 0.246 3.754 9 C 0.073 3.927 10 C -0.544 4.544 11 H 0.026 0.974 12 C 0.020 3.980 13 N -0.939 5.939 14 Si 0.954 3.046 15 H -0.265 1.265 16 H -0.281 1.281 17 H -0.225 1.225 18 N -0.506 5.506 19 H 0.098 0.902 20 H 0.125 0.875 21 H 0.106 0.894 22 H 0.082 0.918 23 H 0.091 0.909 24 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.554 -4.908 -10.473 15.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.359 3.641 3 F -0.169 7.169 4 F -0.164 7.164 5 C -0.187 4.187 6 N -0.064 5.064 7 O 0.021 5.979 8 C 0.028 3.972 9 C 0.034 3.966 10 C -0.583 4.583 11 H 0.044 0.956 12 C -0.179 4.179 13 N -0.577 5.577 14 Si 0.775 3.225 15 H -0.189 1.189 16 H -0.206 1.206 17 H -0.147 1.147 18 N -0.240 5.240 19 H 0.117 0.883 20 H 0.143 0.857 21 H 0.125 0.875 22 H 0.100 0.900 23 H 0.109 0.891 24 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -10.109 -4.607 -10.758 15.464 hybrid contribution 0.977 0.077 0.444 1.076 sum -9.132 -4.530 -10.314 14.501 Atomic orbital electron populations 1.22773 0.84986 1.07661 1.07731 1.18795 0.95616 0.73413 0.76315 1.93072 1.91164 1.36333 1.96371 1.93063 1.91117 1.81005 1.51165 1.26610 0.87188 1.04152 1.00784 1.74456 1.18872 1.13328 0.99782 1.85269 1.17214 1.56537 1.38870 1.29500 0.87399 0.90471 0.89850 1.18594 0.86014 0.98280 0.93719 1.20737 1.16283 1.01532 1.19743 0.95600 1.25928 0.97243 1.01328 0.93425 1.70025 1.28582 1.36108 1.22981 0.85615 0.79536 0.79049 0.78333 1.18945 1.20623 1.14721 1.71949 1.19865 1.18372 1.13795 0.88270 0.85656 0.87523 0.90000 0.89068 0.91694 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.38 8.88 71.98 0.64 -2.74 14 2 C 0.40 11.90 2.53 29.85 0.08 11.98 14 3 F -0.19 -6.23 17.05 44.97 0.77 -5.46 14 4 F -0.18 -5.54 17.05 44.97 0.77 -4.78 14 5 C 0.09 3.26 7.33 138.46 1.02 4.28 14 6 N -0.36 -12.95 11.47 -60.30 -0.69 -13.64 14 7 O 0.08 3.19 11.31 74.83 0.85 4.03 14 8 C 0.25 10.38 7.70 88.38 0.68 11.06 14 9 C 0.07 3.10 4.67 29.10 0.14 3.24 14 10 C -0.54 -29.62 9.65 25.60 0.25 -29.38 14 11 H 0.03 1.62 7.98 -2.91 -0.02 1.60 14 12 C 0.02 1.10 5.47 84.66 0.46 1.56 14 13 N -0.94 -55.84 13.96 21.45 0.30 -55.54 14 14 Si 0.95 38.84 27.47 68.60 1.88 40.72 14 15 H -0.26 -10.50 7.11 99.48 0.71 -9.80 14 16 H -0.28 -11.38 7.11 99.48 0.71 -10.67 14 17 H -0.22 -7.80 6.54 99.48 0.65 -7.15 14 18 N -0.51 -21.95 11.55 -303.17 -3.50 -25.45 14 19 H 0.10 1.90 8.14 -2.39 -0.02 1.88 14 20 H 0.12 1.65 8.14 -2.39 -0.02 1.63 14 21 H 0.11 1.85 8.14 -2.38 -0.02 1.83 14 22 H 0.08 3.27 7.57 -2.39 -0.02 3.25 14 23 H 0.09 3.36 7.20 -2.39 -0.02 3.35 14 24 H 0.27 15.03 8.31 -92.71 -0.77 14.26 14 Total: -1.00 -64.74 232.33 4.80 -59.93 By element: Atomic # 1 Polarization: -1.00 SS G_CDS: 1.18 Total: 0.18 kcal Atomic # 6 Polarization: -3.25 SS G_CDS: 3.26 Total: 0.00 kcal Atomic # 7 Polarization: -90.74 SS G_CDS: -3.89 Total: -94.63 kcal Atomic # 8 Polarization: 3.19 SS G_CDS: 0.85 Total: 4.03 kcal Atomic # 9 Polarization: -11.77 SS G_CDS: 1.53 Total: -10.24 kcal Atomic # 14 Polarization: 38.84 SS G_CDS: 1.88 Total: 40.72 kcal Total: -64.74 4.80 -59.93 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000401712187.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.231 kcal (2) G-P(sol) polarization free energy of solvation -64.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.803 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.934 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds