Wall clock time and date at job start Mon Mar 30 2020 03:00:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86803 * 119.99848 * 2 1 4 4 H 1.48503 * 109.47205 * 179.97438 * 3 2 1 5 5 H 1.48506 * 109.47281 * 300.00326 * 3 2 1 6 6 H 1.48500 * 109.47164 * 60.00026 * 3 2 1 7 7 C 1.37875 * 120.00378 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00169 * 179.97438 * 7 2 1 9 9 C 1.50704 * 119.99497 * 359.97438 * 7 2 1 10 10 C 1.50699 * 109.46706 * 179.97438 * 9 7 2 11 11 C 1.35024 * 126.08287 * 265.35084 * 10 9 7 12 12 N 1.35071 * 108.03195 * 180.13089 * 11 10 9 13 13 H 0.97001 * 125.91458 * 179.84336 * 12 11 10 14 14 N 1.40072 * 108.17745 * 359.57121 * 12 11 10 15 15 C 1.31802 * 108.08146 * 0.26974 * 14 12 11 16 16 C 1.47863 * 126.06112 * 179.97438 * 15 14 12 17 17 C 1.35909 * 125.93125 * 324.68802 * 16 15 14 18 18 C 1.40981 * 106.74453 * 179.89074 * 17 16 15 19 19 C 1.34701 * 107.02362 * 0.37103 * 18 17 16 20 20 O 1.34340 * 108.66743 * 359.77232 * 19 18 17 21 21 H 0.97007 * 119.99912 * 359.97438 * 1 2 3 22 22 H 1.09004 * 109.46990 * 60.00413 * 9 7 2 23 23 H 1.08996 * 109.47394 * 299.99950 * 9 7 2 24 24 H 1.08005 * 125.98796 * 359.97438 * 11 10 9 25 25 H 1.08000 * 126.62789 * 359.97438 * 17 16 15 26 26 H 1.07996 * 126.48519 * 180.17336 * 18 17 16 27 27 H 1.08001 * 125.66526 * 179.76695 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7092 1.3465 0.0006 5 1 1.8903 2.3966 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1939 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2304 -3.6445 -0.0018 11 6 2.6791 -4.3059 -1.0901 12 7 3.5376 -5.2620 -0.6738 13 1 4.0096 -5.8898 -1.2429 14 7 3.6331 -5.1860 0.7216 15 6 2.8464 -4.2118 1.1330 16 6 2.6452 -3.7890 2.5356 17 6 2.6292 -4.6072 3.6207 18 6 2.4116 -3.7857 4.7456 19 6 2.2984 -2.5214 4.2947 20 8 2.4401 -2.5271 2.9588 21 1 -0.4850 0.8401 0.0004 22 1 0.6241 -2.5566 -0.8904 23 1 0.6248 -2.5571 0.8896 24 1 2.3987 -4.1071 -2.1140 25 1 2.7596 -5.6793 3.6213 26 1 2.3447 -4.1093 5.7738 27 1 2.1229 -1.6483 4.9057 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000409441941.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:00:38 Heat of formation + Delta-G solvation = 63.631667 kcal Electronic energy + Delta-G solvation = -14076.223561 eV Core-core repulsion = 11608.545112 eV Total energy + Delta-G solvation = -2467.678449 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 218.080 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -43.34122 -41.90863 -35.43790 -34.01507 -33.31150 -32.33892 -29.68455 -28.54231 -24.92619 -23.98280 -22.53512 -21.25071 -20.53415 -18.69504 -18.30840 -17.93755 -16.85208 -16.44550 -15.71634 -15.47364 -14.76778 -14.33201 -13.96890 -13.67316 -13.60105 -13.35516 -13.04404 -12.74376 -12.50262 -12.00661 -11.51941 -11.44858 -10.97208 -10.64385 -10.50705 -9.46138 -9.00198 -8.09378 -6.19473 0.34721 1.13392 1.40436 1.41422 1.53937 1.62789 1.69786 2.14565 2.48086 2.55384 3.20875 3.70010 4.05723 4.19621 4.26795 4.42134 4.74775 4.89542 4.96720 5.08132 5.21562 5.40529 5.62299 5.69020 5.72840 5.83939 6.26027 6.31428 6.51097 6.71277 6.89959 7.46907 8.99686 Molecular weight = 218.08amu Principal moments of inertia in cm(-1) A = 0.022994 B = 0.011861 C = 0.008680 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1217.417944 B = 2360.104979 C = 3224.900718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.008 3.992 3 Si 0.955 3.045 4 H -0.272 1.272 5 H -0.275 1.275 6 H -0.278 1.278 7 C -0.503 4.503 8 H 0.042 0.958 9 C 0.101 3.899 10 C -0.212 4.212 11 C 0.061 3.939 12 N -0.453 5.453 13 H 0.458 0.542 14 N -0.292 5.292 15 C 0.119 3.881 16 C 0.034 3.966 17 C -0.184 4.184 18 C -0.214 4.214 19 C -0.044 4.044 20 O -0.175 6.175 21 H 0.263 0.737 22 H 0.010 0.990 23 H -0.009 1.009 24 H 0.211 0.789 25 H 0.162 0.838 26 H 0.186 0.814 27 H 0.233 0.767 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.491 -8.160 3.537 10.452 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.189 4.189 3 Si 0.780 3.220 4 H -0.196 1.196 5 H -0.200 1.200 6 H -0.204 1.204 7 C -0.542 4.542 8 H 0.060 0.940 9 C 0.063 3.937 10 C -0.223 4.223 11 C -0.085 4.085 12 N -0.166 5.166 13 H 0.307 0.693 14 N -0.120 5.120 15 C -0.043 4.043 16 C -0.018 4.018 17 C -0.205 4.205 18 C -0.233 4.233 19 C -0.113 4.113 20 O -0.069 6.069 21 H 0.071 0.929 22 H 0.028 0.972 23 H 0.010 0.990 24 H 0.227 0.773 25 H 0.180 0.820 26 H 0.203 0.797 27 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges 6.149 -8.697 3.655 11.261 hybrid contribution -0.224 1.217 -0.479 1.327 sum 5.925 -7.480 3.176 10.057 Atomic orbital electron populations 1.70081 1.07385 1.27411 1.52324 1.25751 0.95600 1.02433 0.95138 0.85555 0.78787 0.79703 0.77933 1.19650 1.20029 1.20364 1.21254 0.92326 0.91349 1.49255 0.93990 1.17283 0.91628 0.89526 0.95227 1.20857 1.06627 1.02977 0.91827 1.22602 0.94007 0.91201 1.00667 1.46008 1.36962 1.29269 1.04397 0.69319 1.77314 1.22148 1.21335 0.91178 1.19326 0.97938 0.96338 0.90747 1.19196 1.08411 0.82687 0.91554 1.22014 1.06605 1.01048 0.90883 1.22063 1.08234 0.91992 1.00980 1.25004 1.04387 1.01783 0.80080 1.84328 1.68752 1.29319 1.24482 0.92855 0.97217 0.99049 0.77270 0.82021 0.79670 0.75090 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.50 13.29 21.45 0.28 -56.22 15 2 C 0.01 0.47 5.46 84.65 0.46 0.93 15 3 Si 0.95 45.20 29.54 68.60 2.03 47.23 15 4 H -0.27 -12.67 7.11 99.48 0.71 -11.96 15 5 H -0.27 -12.47 7.11 99.48 0.71 -11.76 15 6 H -0.28 -12.79 7.11 99.48 0.71 -12.09 15 7 C -0.50 -29.29 9.09 25.60 0.23 -29.05 15 8 H 0.04 2.48 7.74 -2.91 -0.02 2.46 15 9 C 0.10 5.55 5.13 29.10 0.15 5.70 15 10 C -0.21 -9.70 5.32 -19.92 -0.11 -9.81 15 11 C 0.06 2.13 11.88 83.45 0.99 3.12 15 12 N -0.45 -13.62 7.35 -57.69 -0.42 -14.04 15 13 H 0.46 8.96 8.96 -213.34 -1.91 7.04 15 14 N -0.29 -11.14 12.75 -48.36 -0.62 -11.76 15 15 C 0.12 5.26 7.07 42.38 0.30 5.56 15 16 C 0.03 1.45 6.95 24.28 0.17 1.62 15 17 C -0.18 -6.45 10.85 22.40 0.24 -6.21 15 18 C -0.21 -6.30 10.89 22.13 0.24 -6.06 15 19 C -0.04 -1.46 12.08 67.01 0.81 -0.65 15 20 O -0.17 -7.92 10.54 -6.49 -0.07 -7.99 15 21 H 0.26 14.93 8.31 -92.70 -0.77 14.16 15 22 H 0.01 0.54 8.14 -2.39 -0.02 0.52 15 23 H -0.01 -0.53 8.11 -2.39 -0.02 -0.55 15 24 H 0.21 5.63 8.06 -2.91 -0.02 5.60 15 25 H 0.16 4.92 8.06 -2.91 -0.02 4.89 15 26 H 0.19 3.79 8.06 -2.91 -0.02 3.77 15 27 H 0.23 5.63 8.06 -2.91 -0.02 5.60 15 Total: -1.00 -73.94 252.99 3.98 -69.96 By element: Atomic # 1 Polarization: 8.39 SS G_CDS: -0.72 Total: 7.68 kcal Atomic # 6 Polarization: -38.35 SS G_CDS: 3.49 Total: -34.86 kcal Atomic # 7 Polarization: -81.26 SS G_CDS: -0.76 Total: -82.02 kcal Atomic # 8 Polarization: -7.92 SS G_CDS: -0.07 Total: -7.99 kcal Atomic # 14 Polarization: 45.20 SS G_CDS: 2.03 Total: 47.23 kcal Total: -73.94 3.98 -69.96 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000409441941.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.592 kcal (2) G-P(sol) polarization free energy of solvation -73.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.976 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.960 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds