Wall clock time and date at job start Mon Mar 30 2020 02:28:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42893 * 114.00055 * 2 1 4 4 C 1.53004 * 109.47188 * 179.97438 * 3 2 1 5 5 N 1.46507 * 109.47049 * 64.99723 * 4 3 2 6 6 C 1.36934 * 119.99629 * 90.00155 * 5 4 3 7 7 H 1.07993 * 120.00315 * 326.50819 * 6 5 4 8 8 C 1.38815 * 119.99640 * 146.52110 * 6 5 4 9 9 N 1.31622 * 119.99879 * 336.16074 * 8 6 5 10 10 Si 1.86795 * 120.00052 * 156.17133 * 8 6 5 11 11 H 1.48497 * 109.47538 * 89.99211 * 10 8 6 12 12 H 1.48501 * 109.47092 * 209.99255 * 10 8 6 13 13 H 1.48495 * 109.47248 * 329.99271 * 10 8 6 14 14 C 1.46502 * 119.99811 * 270.00400 * 5 4 3 15 15 C 1.53005 * 109.47100 * 96.38274 * 14 5 4 16 16 F 1.39901 * 115.55116 * 34.41243 * 15 14 5 17 17 C 1.53005 * 117.49312 * 248.74363 * 15 14 5 18 18 C 1.52992 * 117.49792 * 180.08687 * 15 14 5 19 19 H 1.08993 * 109.47451 * 180.02562 * 1 2 3 20 20 H 1.09002 * 109.46974 * 300.00575 * 1 2 3 21 21 H 1.09001 * 109.46441 * 60.00022 * 1 2 3 22 22 H 1.09002 * 109.47511 * 59.99980 * 3 2 1 23 23 H 1.08998 * 109.47392 * 299.99312 * 3 2 1 24 24 H 1.08999 * 109.47803 * 184.99649 * 4 3 2 25 25 H 1.09001 * 109.47033 * 305.00409 * 4 3 2 26 26 H 0.96993 * 119.99793 * 180.02562 * 9 8 6 27 27 H 1.08999 * 109.46907 * 216.37379 * 14 5 4 28 28 H 1.08999 * 109.47524 * 336.37816 * 14 5 4 29 29 H 1.08997 * 117.49803 * 359.97438 * 17 15 14 30 30 H 1.09003 * 117.49523 * 145.02388 * 17 15 14 31 31 H 1.08995 * 117.49873 * 214.97635 * 18 15 14 32 32 H 1.09005 * 117.50159 * 359.96847 * 18 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 7 3.9767 0.5638 -1.2509 6 6 4.2680 1.3451 -2.3371 7 1 3.7167 2.2576 -2.5094 8 6 5.2718 0.9640 -3.2170 9 7 6.2351 0.1646 -2.8100 10 14 5.2557 1.5858 -4.9783 11 1 6.0109 2.8618 -5.0598 12 1 5.8902 0.5776 -5.8650 13 1 3.8532 1.8123 -5.4105 14 6 4.1062 -0.8928 -1.3402 15 6 2.8358 -1.4808 -1.9575 16 9 2.2171 -0.6909 -2.9325 17 6 1.9331 -2.3201 -1.0509 18 6 2.7740 -2.9992 -2.1348 19 1 -0.3634 -1.0276 0.0005 20 1 -0.3633 0.5139 0.8900 21 1 -0.3632 0.5139 -0.8900 22 1 1.6887 1.8464 0.8900 23 1 1.6888 1.8463 -0.8900 24 1 3.9786 2.1764 0.0901 25 1 3.8508 0.5684 0.8427 26 1 6.9366 -0.1014 -3.4247 27 1 4.9634 -1.1436 -1.9651 28 1 4.2505 -1.3066 -0.3422 29 1 2.2447 -2.4536 -0.0150 30 1 0.8573 -2.2571 -1.2144 31 1 2.2511 -3.3827 -3.0108 32 1 3.6387 -3.5792 -1.8122 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000590781341.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:08 Heat of formation + Delta-G solvation = -57.692972 kcal Electronic energy + Delta-G solvation = -16053.114126 eV Core-core repulsion = 13350.664426 eV Total energy + Delta-G solvation = -2702.449699 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 217.122 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -47.97990 -38.95936 -37.52920 -36.34190 -33.47155 -30.32939 -28.10040 -27.04751 -25.03730 -23.27584 -22.24528 -21.20445 -18.78406 -17.39868 -16.98301 -16.64406 -16.32081 -16.27268 -15.51454 -15.47046 -15.01995 -14.70800 -14.14732 -13.42106 -13.27219 -13.18033 -12.85773 -12.70180 -12.62050 -12.47691 -12.19240 -12.05048 -11.93518 -11.75093 -10.92262 -10.57206 -10.38673 -10.04466 -8.58331 -7.77585 -5.36028 1.42118 1.46421 1.56569 2.52237 2.97617 3.15371 3.25778 3.63749 3.70286 4.09680 4.18609 4.44566 4.53694 4.55431 4.63224 4.71355 4.74467 4.77197 4.87721 5.01732 5.04860 5.10131 5.27941 5.31087 5.60181 5.66295 5.77596 6.46972 6.52410 7.18736 7.88986 8.39046 9.15799 Molecular weight = 217.12amu Principal moments of inertia in cm(-1) A = 0.030473 B = 0.012882 C = 0.011208 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 918.629040 B = 2172.980641 C = 2497.608036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.383 6.383 3 C 0.053 3.947 4 C 0.142 3.858 5 N -0.587 5.587 6 C -0.249 4.249 7 H 0.048 0.952 8 C -0.035 4.035 9 N -0.915 5.915 10 Si 0.945 3.055 11 H -0.280 1.280 12 H -0.291 1.291 13 H -0.284 1.284 14 C 0.167 3.833 15 C 0.028 3.972 16 F -0.201 7.201 17 C -0.136 4.136 18 C -0.206 4.206 19 H 0.093 0.907 20 H 0.050 0.950 21 H 0.023 0.977 22 H 0.061 0.939 23 H 0.020 0.980 24 H 0.062 0.938 25 H 0.054 0.946 26 H 0.251 0.749 27 H 0.073 0.927 28 H 0.053 0.947 29 H 0.108 0.892 30 H 0.096 0.904 31 H 0.097 0.903 32 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.104 -3.353 5.930 11.371 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.302 6.302 3 C -0.026 4.026 4 C 0.017 3.983 5 N -0.306 5.306 6 C -0.379 4.379 7 H 0.066 0.934 8 C -0.231 4.231 9 N -0.560 5.560 10 Si 0.774 3.226 11 H -0.206 1.206 12 H -0.217 1.217 13 H -0.209 1.209 14 C 0.040 3.960 15 C 0.008 3.992 16 F -0.181 7.181 17 C -0.174 4.174 18 C -0.245 4.245 19 H 0.111 0.889 20 H 0.069 0.931 21 H 0.041 0.959 22 H 0.079 0.921 23 H 0.038 0.962 24 H 0.080 0.920 25 H 0.072 0.928 26 H 0.060 0.940 27 H 0.091 0.909 28 H 0.072 0.928 29 H 0.127 0.873 30 H 0.114 0.886 31 H 0.115 0.885 32 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -8.848 -3.519 5.841 11.171 hybrid contribution -0.224 0.678 -1.336 1.515 sum -9.072 -2.841 4.505 10.520 Atomic orbital electron populations 1.22770 0.81606 1.02878 0.99436 1.87991 1.19498 1.27543 1.95176 1.23112 0.96265 0.84816 0.98396 1.21090 0.91225 0.97729 0.88296 1.43715 1.76655 1.01214 1.09002 1.19043 1.11193 1.05636 1.02034 0.93388 1.25515 0.94622 1.00837 1.02168 1.70037 1.11449 1.39831 1.34665 0.85625 0.77238 0.77615 0.82127 1.20610 1.21671 1.20939 1.20814 0.93738 0.83442 0.97994 1.22211 0.97967 0.86938 0.92114 1.92686 1.83967 1.76796 1.64636 1.23323 0.97544 1.00279 0.96225 1.23767 1.03889 0.94628 1.02166 0.88877 0.93140 0.95879 0.92121 0.96200 0.91955 0.92766 0.93958 0.90923 0.92835 0.87338 0.88572 0.88480 0.87175 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.79 10.45 113.37 1.18 1.97 16 2 O -0.38 -13.19 6.58 -148.98 -0.98 -14.17 16 3 C 0.05 1.90 6.28 71.98 0.45 2.35 16 4 C 0.14 5.87 6.11 86.38 0.53 6.40 16 5 N -0.59 -29.48 2.30 -701.97 -1.61 -31.09 16 6 C -0.25 -13.96 8.70 84.03 0.73 -13.23 16 7 H 0.05 2.73 7.93 -2.91 -0.02 2.71 16 8 C -0.03 -1.98 4.99 84.86 0.42 -1.56 16 9 N -0.91 -53.79 11.27 21.65 0.24 -53.55 16 10 Si 0.95 46.67 29.62 68.60 2.03 48.71 16 11 H -0.28 -13.30 7.11 99.48 0.71 -12.59 16 12 H -0.29 -14.27 7.11 99.48 0.71 -13.57 16 13 H -0.28 -14.11 7.11 99.48 0.71 -13.40 16 14 C 0.17 8.01 5.45 86.38 0.47 8.48 16 15 C 0.03 1.22 2.54 -10.79 -0.03 1.19 16 16 F -0.20 -10.11 16.54 44.97 0.74 -9.37 16 17 C -0.14 -4.48 7.42 30.62 0.23 -4.25 16 18 C -0.21 -7.07 10.24 30.62 0.31 -6.76 16 19 H 0.09 2.10 7.26 -2.39 -0.02 2.09 16 20 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 21 H 0.02 0.65 8.14 -2.39 -0.02 0.63 16 22 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 23 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 24 H 0.06 2.54 8.04 -2.39 -0.02 2.52 16 25 H 0.05 2.08 7.85 -2.39 -0.02 2.06 16 26 H 0.25 14.29 8.31 -92.71 -0.77 13.52 16 27 H 0.07 4.02 5.32 -2.39 -0.01 4.01 16 28 H 0.05 2.35 7.58 -2.39 -0.02 2.33 16 29 H 0.11 3.30 8.03 -2.39 -0.02 3.28 16 30 H 0.10 2.92 6.88 -2.39 -0.02 2.90 16 31 H 0.10 3.12 8.14 -2.39 -0.02 3.10 16 32 H 0.11 3.46 8.14 -2.38 -0.02 3.44 16 Total: -1.00 -64.05 265.85 5.82 -58.23 By element: Atomic # 1 Polarization: 5.55 SS G_CDS: 1.09 Total: 6.64 kcal Atomic # 6 Polarization: -9.71 SS G_CDS: 4.30 Total: -5.40 kcal Atomic # 7 Polarization: -83.27 SS G_CDS: -1.37 Total: -84.64 kcal Atomic # 8 Polarization: -13.19 SS G_CDS: -0.98 Total: -14.17 kcal Atomic # 9 Polarization: -10.11 SS G_CDS: 0.74 Total: -9.37 kcal Atomic # 14 Polarization: 46.67 SS G_CDS: 2.03 Total: 48.71 kcal Total: -64.05 5.82 -58.23 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590781341.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.537 kcal (2) G-P(sol) polarization free energy of solvation -64.046 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.509 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.816 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.229 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds