Wall clock time and date at job start Mon Mar 30 2020 02:36:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86795 * 120.00190 * 2 1 4 4 H 1.48497 * 109.47307 * 275.28350 * 3 2 1 5 5 H 1.48499 * 109.46918 * 35.28176 * 3 2 1 6 6 H 1.48500 * 109.47058 * 155.28202 * 3 2 1 7 7 C 1.38818 * 120.00013 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99510 * 37.07536 * 7 2 1 9 9 N 1.36929 * 120.00276 * 217.35632 * 7 2 1 10 10 C 1.46972 * 120.59073 * 26.23339 * 9 7 2 11 11 C 1.53815 * 108.39473 * 124.76046 * 10 9 7 12 12 N 1.46973 * 108.57877 * 49.63763 * 11 10 9 13 13 C 1.34774 * 120.59110 * 124.62153 * 12 11 10 14 14 O 1.21337 * 120.00277 * 0.02562 * 13 12 11 15 15 Cl 1.73601 * 119.99778 * 180.02562 * 13 12 11 16 16 C 1.46957 * 118.81406 * 304.64856 * 12 11 10 17 17 C 1.46960 * 120.59772 * 206.52209 * 9 7 2 18 18 H 0.97000 * 120.00046 * 0.02562 * 1 2 3 19 19 H 1.09002 * 109.61298 * 244.54233 * 10 9 7 20 20 H 1.08995 * 109.61261 * 5.05756 * 10 9 7 21 21 H 1.08994 * 109.74454 * 289.85281 * 11 10 9 22 22 H 1.09004 * 109.67411 * 169.38330 * 11 10 9 23 23 H 1.09004 * 109.60829 * 295.48016 * 16 12 11 24 24 H 1.08993 * 109.75563 * 175.05475 * 16 12 11 25 25 H 1.09001 * 109.60662 * 354.94142 * 17 9 7 26 26 H 1.08998 * 109.61756 * 115.28412 * 17 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3861 2.1108 -1.3941 5 1 1.5079 2.6178 0.8087 6 1 3.5991 1.4104 0.5854 7 6 2.0102 -1.2022 -0.0005 8 1 1.6339 -2.0427 -0.5648 9 7 3.1689 -1.3242 0.7189 10 6 3.4071 -0.4842 1.9012 11 6 3.7059 -1.4036 3.0976 12 7 4.7362 -2.3725 2.6978 13 6 5.8770 -2.4918 3.4054 14 8 6.0605 -1.7961 4.3824 15 17 7.0840 -3.6409 2.9189 16 6 4.5005 -3.2084 1.5123 17 6 4.1992 -2.2929 0.3191 18 1 -0.4850 0.8400 -0.0004 19 1 4.2586 0.1714 1.7186 20 1 2.5201 0.1137 2.1099 21 1 2.7995 -1.9334 3.3902 22 1 4.0688 -0.8087 3.9359 23 1 3.6505 -3.8667 1.6921 24 1 5.3872 -3.8056 1.3004 25 1 3.8352 -2.8898 -0.5171 26 1 5.1047 -1.7631 0.0236 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000725350772.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:29 Heat of formation + Delta-G solvation = -24.193339 kcal Electronic energy + Delta-G solvation = -13205.320758 eV Core-core repulsion = 10731.401082 eV Total energy + Delta-G solvation = -2473.919677 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 218.056 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -41.11500 -38.80524 -37.59415 -35.85163 -33.55174 -32.35083 -29.11280 -25.56830 -25.16868 -23.11513 -21.13415 -19.27140 -18.29434 -17.60430 -16.99127 -16.64301 -16.05171 -15.49466 -15.26105 -14.84120 -14.37177 -14.22108 -13.67924 -12.94278 -12.65556 -12.51196 -12.43576 -12.21246 -12.12532 -12.02131 -11.58017 -11.41624 -10.72449 -10.14670 -8.96564 -8.24977 -5.40610 0.17585 1.04741 1.35447 1.47499 1.52159 2.20904 2.44220 2.90971 3.34376 3.98736 4.01653 4.20374 4.35243 4.48285 4.50836 4.64915 4.85043 4.94761 5.11618 5.20632 5.82577 5.91482 6.12452 6.42442 6.86925 7.60150 8.02461 8.92634 Molecular weight = 218.06amu Principal moments of inertia in cm(-1) A = 0.052924 B = 0.008998 C = 0.008492 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 528.931511 B = 3110.969402 C = 3296.282666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.007 4.007 3 Si 0.890 3.110 4 H -0.301 1.301 5 H -0.297 1.297 6 H -0.241 1.241 7 C -0.264 4.264 8 H 0.061 0.939 9 N -0.613 5.613 10 C 0.130 3.870 11 C 0.107 3.893 12 N -0.578 5.578 13 C 0.560 3.440 14 O -0.536 6.536 15 Cl -0.072 7.072 16 C 0.087 3.913 17 C 0.127 3.873 18 H 0.263 0.737 19 H 0.035 0.965 20 H 0.065 0.935 21 H 0.084 0.916 22 H 0.095 0.905 23 H 0.086 0.914 24 H 0.117 0.883 25 H 0.088 0.912 26 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.340 -6.690 4.039 13.772 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.205 4.205 3 Si 0.718 3.282 4 H -0.229 1.229 5 H -0.224 1.224 6 H -0.165 1.165 7 C -0.392 4.392 8 H 0.078 0.922 9 N -0.337 5.337 10 C 0.004 3.996 11 C -0.016 4.016 12 N -0.312 5.312 13 C 0.320 3.680 14 O -0.416 6.416 15 Cl -0.047 7.047 16 C -0.036 4.036 17 C 0.001 3.999 18 H 0.072 0.928 19 H 0.053 0.947 20 H 0.083 0.917 21 H 0.102 0.898 22 H 0.113 0.887 23 H 0.104 0.896 24 H 0.135 0.865 25 H 0.106 0.894 26 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 11.365 -6.354 4.485 13.771 hybrid contribution -0.022 1.028 -0.394 1.101 sum 11.343 -5.326 4.091 13.182 Atomic orbital electron populations 1.70188 1.07632 1.27523 1.51207 1.25646 0.95126 1.00065 0.99677 0.86719 0.81667 0.82560 0.77277 1.22932 1.22428 1.16494 1.18727 0.97297 0.95961 1.27232 0.92160 1.44458 1.18170 1.43571 1.27481 1.21789 0.99071 0.92547 0.86223 1.22454 0.89804 0.91074 0.98288 1.47992 1.15636 1.39039 1.28516 1.21630 0.81545 0.81696 0.83149 1.90816 1.76834 1.45298 1.28674 1.98489 1.54371 1.60259 1.91618 1.22652 1.03936 0.93174 0.83802 1.21541 0.91295 0.91378 0.95652 0.92797 0.94746 0.91670 0.89809 0.88660 0.89557 0.86507 0.89413 0.94401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.22 13.97 21.65 0.30 -53.92 15 2 C -0.01 -0.36 4.80 84.86 0.41 0.04 15 3 Si 0.89 42.25 26.47 68.60 1.82 44.07 15 4 H -0.30 -14.68 7.11 99.48 0.71 -13.97 15 5 H -0.30 -14.25 7.11 99.48 0.71 -13.54 15 6 H -0.24 -10.64 4.99 99.48 0.50 -10.14 15 7 C -0.26 -13.61 9.84 84.04 0.83 -12.78 15 8 H 0.06 3.35 8.05 -2.91 -0.02 3.32 15 9 N -0.61 -26.05 2.71 -697.32 -1.89 -27.94 15 10 C 0.13 5.15 4.58 86.56 0.40 5.55 15 11 C 0.11 3.55 6.61 86.56 0.57 4.12 15 12 N -0.58 -17.48 2.95 -821.11 -2.42 -19.90 15 13 C 0.56 16.95 8.29 129.79 1.08 18.02 15 14 O -0.54 -19.36 16.56 -3.21 -0.05 -19.41 15 15 Cl -0.07 -1.71 27.10 -2.72 -0.07 -1.78 15 16 C 0.09 2.30 6.54 86.42 0.56 2.87 15 17 C 0.13 4.14 6.67 86.42 0.58 4.72 15 18 H 0.26 14.76 8.31 -92.71 -0.77 13.99 15 19 H 0.03 1.39 6.78 -2.39 -0.02 1.37 15 20 H 0.07 2.82 5.60 -2.39 -0.01 2.80 15 21 H 0.08 2.75 8.14 -2.39 -0.02 2.73 15 22 H 0.10 3.05 6.99 -2.39 -0.02 3.04 15 23 H 0.09 2.24 8.14 -2.39 -0.02 2.22 15 24 H 0.12 2.40 6.10 -2.39 -0.01 2.39 15 25 H 0.09 2.73 7.93 -2.39 -0.02 2.71 15 26 H 0.04 1.20 8.14 -2.39 -0.02 1.18 15 Total: -1.00 -61.32 230.48 3.08 -58.24 By element: Atomic # 1 Polarization: -2.87 SS G_CDS: 0.98 Total: -1.90 kcal Atomic # 6 Polarization: 18.12 SS G_CDS: 4.42 Total: 22.54 kcal Atomic # 7 Polarization: -97.75 SS G_CDS: -4.01 Total: -101.76 kcal Atomic # 8 Polarization: -19.36 SS G_CDS: -0.05 Total: -19.41 kcal Atomic # 14 Polarization: 42.25 SS G_CDS: 1.82 Total: 44.07 kcal Atomic # 17 Polarization: -1.71 SS G_CDS: -0.07 Total: -1.78 kcal Total: -61.32 3.08 -58.24 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725350772.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.043 kcal (2) G-P(sol) polarization free energy of solvation -61.318 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.275 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.082 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.236 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.193 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds