Wall clock time and date at job start Mon Mar 30 2020 02:28:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31633 * 1 3 3 Si 1.86796 * 119.99854 * 2 1 4 4 H 1.48498 * 109.47357 * 269.99706 * 3 2 1 5 5 H 1.48495 * 109.47496 * 29.99926 * 3 2 1 6 6 H 1.48500 * 109.46916 * 150.00168 * 3 2 1 7 7 C 1.38802 * 119.99688 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00333 * 0.02562 * 7 2 1 9 9 S 1.76196 * 119.99637 * 180.02562 * 7 2 1 10 10 C 1.81003 * 99.99846 * 180.02562 * 9 7 2 11 11 C 1.50706 * 109.46853 * 179.97438 * 10 9 7 12 12 C 1.34491 * 125.77905 * 89.99921 * 11 10 9 13 13 C 1.41406 * 106.85237 * 179.97438 * 12 11 10 14 14 C 1.34645 * 106.82966 * 0.02562 * 13 12 11 15 15 Cl 1.73597 * 125.80055 * 180.02562 * 14 13 12 16 16 O 1.34309 * 108.39767 * 359.73538 * 14 13 12 17 17 H 0.97002 * 120.00245 * 359.97438 * 1 2 3 18 18 H 1.09000 * 109.46793 * 60.00091 * 10 9 7 19 19 H 1.09000 * 109.47087 * 299.99827 * 10 9 7 20 20 H 1.08000 * 126.57024 * 0.02562 * 12 11 10 21 21 H 1.07999 * 126.57833 * 180.02562 * 13 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0464 -1.4000 5 1 1.4478 2.6527 0.7000 6 1 3.5478 1.4401 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 1.4703 -2.1374 -0.0014 9 16 3.7722 -1.2021 0.0001 10 6 4.0865 -2.9846 -0.0017 11 6 5.5730 -3.2326 -0.0021 12 6 6.3487 -3.3631 1.0889 13 6 7.6680 -3.5833 0.6299 14 6 7.6193 -3.5735 -0.7156 15 17 8.9703 -3.7989 -1.7823 16 8 6.3469 -3.3662 -1.0923 17 1 -0.4850 0.8400 0.0004 18 1 3.6439 -3.4306 -0.8924 19 1 3.6433 -3.4326 0.8876 20 1 6.0257 -3.3106 2.1181 21 1 8.5459 -3.7309 1.2413 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000757170493.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:40 Heat of formation + Delta-G solvation = 3.744803 kcal Electronic energy + Delta-G solvation = -10052.026551 eV Core-core repulsion = 7853.945388 eV Total energy + Delta-G solvation = -2198.081162 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 217.991 amu Computer time = 0.09 seconds Orbital eigenvalues (eV) -42.48945 -36.97833 -33.15461 -32.52864 -31.48833 -26.40998 -25.52245 -21.84365 -20.58111 -18.06088 -17.21657 -16.33502 -15.10560 -14.67829 -14.19948 -13.57031 -13.13879 -12.89410 -12.80764 -12.20263 -12.07369 -11.40551 -11.34819 -11.09357 -10.79250 -9.99405 -9.80567 -9.09357 -8.80892 -8.09987 -7.08269 -6.36749 -4.11889 1.23883 1.56371 2.46842 3.05934 3.25642 3.39804 3.47387 3.60328 4.23925 4.64028 4.99868 5.00287 5.03390 5.59860 5.66926 5.83970 5.96475 6.12142 6.50233 7.09837 7.86376 8.35215 9.08010 10.72294 Molecular weight = 217.99amu Principal moments of inertia in cm(-1) A = 0.060970 B = 0.006706 C = 0.006467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 459.131041 B = 4174.271305 C = 4328.505746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.876 5.876 2 C 0.095 3.905 3 Si 0.859 3.141 4 H -0.267 1.267 5 H -0.273 1.273 6 H -0.237 1.237 7 C -0.511 4.511 8 H 0.092 0.908 9 S -0.184 6.184 10 C -0.019 4.019 11 C 0.048 3.952 12 C -0.201 4.201 13 C -0.170 4.170 14 C 0.011 3.989 15 Cl 0.013 6.987 16 O -0.164 6.164 17 H 0.272 0.728 18 H 0.091 0.909 19 H 0.107 0.893 20 H 0.159 0.841 21 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.473 -6.475 0.428 15.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.513 5.513 2 C -0.114 4.114 3 Si 0.683 3.317 4 H -0.192 1.192 5 H -0.198 1.198 6 H -0.161 1.161 7 C -0.659 4.659 8 H 0.110 0.890 9 S 0.044 5.956 10 C -0.166 4.166 11 C -0.004 4.004 12 C -0.223 4.223 13 C -0.190 4.190 14 C -0.066 4.066 15 Cl 0.042 6.958 16 O -0.062 6.062 17 H 0.082 0.918 18 H 0.109 0.891 19 H 0.125 0.875 20 H 0.177 0.823 21 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 14.994 -5.489 0.023 15.967 hybrid contribution -0.477 -0.211 -0.104 0.532 sum 14.517 -5.700 -0.081 15.596 Atomic orbital electron populations 1.69928 1.05852 1.27893 1.47579 1.24743 0.94500 0.98973 0.93143 0.86716 0.81738 0.83314 0.79898 1.19206 1.19802 1.16142 1.22128 0.86765 0.97724 1.59253 0.88973 1.84580 1.11769 1.01677 1.97540 1.21700 0.86705 1.01862 1.06335 1.22079 0.93134 1.02021 0.83145 1.21526 0.91838 1.08858 1.00049 1.21467 0.99175 1.06859 0.91501 1.22274 0.81994 1.12308 0.90014 1.98399 1.35017 1.95577 1.66842 1.83952 1.16229 1.70241 1.35780 0.91786 0.89083 0.87522 0.82327 0.82568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.94 13.97 55.49 0.78 -25.16 14 2 C 0.10 2.73 5.50 -17.43 -0.10 2.63 14 3 Si 0.86 21.10 27.74 -169.99 -4.72 16.38 14 4 H -0.27 -6.53 7.11 56.52 0.40 -6.13 14 5 H -0.27 -6.47 7.11 56.52 0.40 -6.07 14 6 H -0.24 -5.73 6.74 56.52 0.38 -5.35 14 7 C -0.51 -14.34 10.04 30.94 0.31 -14.03 14 8 H 0.09 2.71 8.03 -52.49 -0.42 2.29 14 9 S -0.18 -4.43 19.39 -107.50 -2.08 -6.51 14 10 C -0.02 -0.37 6.20 36.01 0.22 -0.14 14 11 C 0.05 0.83 6.58 -35.63 -0.23 0.60 14 12 C -0.20 -3.03 10.81 -39.70 -0.43 -3.46 14 13 C -0.17 -2.31 10.88 -39.65 -0.43 -2.74 14 14 C 0.01 0.16 7.93 29.46 0.23 0.40 14 15 Cl 0.01 0.16 29.30 -51.86 -1.52 -1.36 14 16 O -0.16 -2.90 10.65 5.52 0.06 -2.84 14 17 H 0.27 7.47 8.31 -40.82 -0.34 7.13 14 18 H 0.09 1.72 8.14 -51.92 -0.42 1.30 14 19 H 0.11 1.88 8.14 -51.92 -0.42 1.46 14 20 H 0.16 2.08 8.06 -52.49 -0.42 1.65 14 21 H 0.16 1.63 8.06 -52.49 -0.42 1.21 14 LS Contribution 228.69 15.07 3.45 3.45 Total: -1.00 -29.56 228.69 -5.73 -35.29 By element: Atomic # 1 Polarization: -1.23 SS G_CDS: -1.27 Total: -2.50 kcal Atomic # 6 Polarization: -16.32 SS G_CDS: -0.42 Total: -16.74 kcal Atomic # 7 Polarization: -25.94 SS G_CDS: 0.78 Total: -25.16 kcal Atomic # 8 Polarization: -2.90 SS G_CDS: 0.06 Total: -2.84 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -4.72 Total: 16.38 kcal Atomic # 16 Polarization: -4.43 SS G_CDS: -2.08 Total: -6.51 kcal Atomic # 17 Polarization: 0.16 SS G_CDS: -1.52 Total: -1.36 kcal Total LS contribution 3.45 Total: 3.45 kcal Total: -29.56 -5.73 -35.29 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000757170493.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.032 kcal (2) G-P(sol) polarization free energy of solvation -29.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.475 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.287 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.745 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.09 seconds