Wall clock time and date at job start Mon Mar 30 2020 02:28:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31633 * 1 3 3 Si 1.86796 * 119.99854 * 2 1 4 4 H 1.48498 * 109.47357 * 269.99706 * 3 2 1 5 5 H 1.48495 * 109.47496 * 29.99926 * 3 2 1 6 6 H 1.48500 * 109.46916 * 150.00168 * 3 2 1 7 7 C 1.38802 * 119.99688 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00333 * 0.02562 * 7 2 1 9 9 S 1.76196 * 119.99637 * 180.02562 * 7 2 1 10 10 C 1.81003 * 99.99846 * 180.02562 * 9 7 2 11 11 C 1.50706 * 109.46853 * 179.97438 * 10 9 7 12 12 C 1.34491 * 125.77905 * 89.99921 * 11 10 9 13 13 C 1.41406 * 106.85237 * 179.97438 * 12 11 10 14 14 C 1.34645 * 106.82966 * 0.02562 * 13 12 11 15 15 Cl 1.73597 * 125.80055 * 180.02562 * 14 13 12 16 16 O 1.34309 * 108.39767 * 359.73538 * 14 13 12 17 17 H 0.97002 * 120.00245 * 359.97438 * 1 2 3 18 18 H 1.09000 * 109.46793 * 60.00091 * 10 9 7 19 19 H 1.09000 * 109.47087 * 299.99827 * 10 9 7 20 20 H 1.08000 * 126.57024 * 0.02562 * 12 11 10 21 21 H 1.07999 * 126.57833 * 180.02562 * 13 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0464 -1.4000 5 1 1.4478 2.6527 0.7000 6 1 3.5478 1.4401 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 1.4703 -2.1374 -0.0014 9 16 3.7722 -1.2021 0.0001 10 6 4.0865 -2.9846 -0.0017 11 6 5.5730 -3.2326 -0.0021 12 6 6.3487 -3.3631 1.0889 13 6 7.6680 -3.5833 0.6299 14 6 7.6193 -3.5735 -0.7156 15 17 8.9703 -3.7989 -1.7823 16 8 6.3469 -3.3662 -1.0923 17 1 -0.4850 0.8400 0.0004 18 1 3.6439 -3.4306 -0.8924 19 1 3.6433 -3.4326 0.8876 20 1 6.0257 -3.3106 2.1181 21 1 8.5459 -3.7309 1.2413 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000757170493.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:40 Heat of formation + Delta-G solvation = -14.123886 kcal Electronic energy + Delta-G solvation = -10052.801395 eV Core-core repulsion = 7853.945388 eV Total energy + Delta-G solvation = -2198.856007 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 217.991 amu Computer time = 0.09 seconds Orbital eigenvalues (eV) -43.70364 -38.01325 -34.70402 -34.38317 -32.81010 -28.14544 -27.29610 -23.01826 -21.83956 -19.90777 -18.61193 -17.63535 -17.13466 -16.13607 -15.86180 -14.99794 -14.84800 -14.31400 -13.92697 -13.57563 -13.45443 -13.15236 -13.02868 -12.72423 -12.29336 -11.91274 -11.19550 -11.00850 -10.72906 -9.36366 -9.06498 -8.53332 -6.26924 0.12361 0.27748 1.08436 1.31390 1.39429 1.48256 1.88954 2.21976 2.29436 2.64660 2.84859 3.67923 3.92694 4.15482 4.45248 4.55840 4.77179 4.88421 5.36472 5.68685 5.88178 6.10184 6.90226 8.59204 Molecular weight = 217.99amu Principal moments of inertia in cm(-1) A = 0.060970 B = 0.006706 C = 0.006467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 459.131041 B = 4174.271305 C = 4328.505746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.043 3.957 3 Si 0.919 3.081 4 H -0.265 1.265 5 H -0.260 1.260 6 H -0.230 1.230 7 C -0.524 4.524 8 H 0.061 0.939 9 S -0.198 6.198 10 C -0.003 4.003 11 C 0.012 3.988 12 C -0.182 4.182 13 C -0.162 4.162 14 C 0.003 3.997 15 Cl 0.035 6.965 16 O -0.188 6.188 17 H 0.278 0.722 18 H 0.086 0.914 19 H 0.120 0.880 20 H 0.180 0.820 21 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.802 -6.359 1.073 17.997 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.163 4.163 3 Si 0.740 3.260 4 H -0.189 1.189 5 H -0.184 1.184 6 H -0.153 1.153 7 C -0.672 4.672 8 H 0.079 0.921 9 S 0.031 5.969 10 C -0.150 4.150 11 C -0.039 4.039 12 C -0.204 4.204 13 C -0.181 4.181 14 C -0.074 4.074 15 Cl 0.064 6.936 16 O -0.087 6.087 17 H 0.087 0.913 18 H 0.104 0.896 19 H 0.138 0.862 20 H 0.197 0.803 21 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges 17.323 -5.379 0.671 18.152 hybrid contribution -1.089 -0.419 -0.335 1.214 sum 16.234 -5.799 0.336 17.242 Atomic orbital electron populations 1.70021 1.07459 1.29165 1.48783 1.25667 0.95355 1.02505 0.92753 0.85807 0.80848 0.79173 0.80128 1.18940 1.18388 1.15309 1.22315 0.89460 0.96698 1.58709 0.92116 1.84283 1.08046 1.06960 1.97600 1.21559 0.88812 0.97794 1.06828 1.21775 0.92438 1.05603 0.84109 1.21912 0.92117 1.06014 1.00353 1.21887 0.99656 1.05424 0.91175 1.22788 0.81661 1.11666 0.91295 1.98409 1.33428 1.95398 1.66375 1.83904 1.17450 1.70981 1.36341 0.91282 0.89585 0.86185 0.80277 0.79029 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.22 13.97 21.65 0.30 -54.92 14 2 C 0.04 2.45 5.50 84.86 0.47 2.92 14 3 Si 0.92 43.36 27.74 68.60 1.90 45.27 14 4 H -0.26 -12.28 7.11 99.48 0.71 -11.57 14 5 H -0.26 -11.54 7.11 99.48 0.71 -10.83 14 6 H -0.23 -10.45 6.74 99.48 0.67 -9.78 14 7 C -0.52 -29.98 10.04 67.96 0.68 -29.30 14 8 H 0.06 3.72 8.03 -2.91 -0.02 3.70 14 9 S -0.20 -9.43 19.39 -56.49 -1.10 -10.52 14 10 C 0.00 -0.11 6.20 71.24 0.44 0.33 14 11 C 0.01 0.39 6.58 24.83 0.16 0.55 14 12 C -0.18 -4.94 10.81 22.19 0.24 -4.70 14 13 C -0.16 -3.81 10.88 22.23 0.24 -3.57 14 14 C 0.00 0.07 7.93 67.00 0.53 0.60 14 15 Cl 0.04 0.77 29.30 -2.72 -0.08 0.69 14 16 O -0.19 -6.37 10.65 -3.17 -0.03 -6.40 14 17 H 0.28 15.43 8.31 -92.71 -0.77 14.66 14 18 H 0.09 3.29 8.14 -2.40 -0.02 3.28 14 19 H 0.12 4.16 8.14 -2.39 -0.02 4.14 14 20 H 0.18 4.04 8.06 -2.91 -0.02 4.01 14 21 H 0.19 3.06 8.06 -2.91 -0.02 3.03 14 Total: -1.00 -63.39 228.69 4.97 -58.42 By element: Atomic # 1 Polarization: -0.57 SS G_CDS: 1.20 Total: 0.63 kcal Atomic # 6 Polarization: -35.93 SS G_CDS: 2.77 Total: -33.17 kcal Atomic # 7 Polarization: -55.22 SS G_CDS: 0.30 Total: -54.92 kcal Atomic # 8 Polarization: -6.37 SS G_CDS: -0.03 Total: -6.40 kcal Atomic # 14 Polarization: 43.36 SS G_CDS: 1.90 Total: 45.27 kcal Atomic # 16 Polarization: -9.43 SS G_CDS: -1.10 Total: -10.52 kcal Atomic # 17 Polarization: 0.77 SS G_CDS: -0.08 Total: 0.69 kcal Total: -63.39 4.97 -58.42 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000757170493.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.293 kcal (2) G-P(sol) polarization free energy of solvation -63.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.968 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.417 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.09 seconds