Wall clock time and date at job start Mon Mar 30 2020 02:22:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09005 * 109.46590 * 2 1 4 4 C 1.50699 * 109.47219 * 239.99925 * 2 1 3 5 5 H 1.07997 * 120.00065 * 239.99777 * 4 2 1 6 6 C 1.37873 * 119.99943 * 59.99998 * 4 2 1 7 7 N 1.31511 * 120.00418 * 359.97438 * 6 4 2 8 8 Si 1.86806 * 119.99758 * 180.02562 * 6 4 2 9 9 H 1.48495 * 109.47248 * 59.99715 * 8 6 4 10 10 H 1.48504 * 109.47011 * 179.97438 * 8 6 4 11 11 H 1.48495 * 109.47128 * 299.99420 * 8 6 4 12 12 N 1.46902 * 109.47069 * 119.99339 * 2 1 3 13 13 C 1.46846 * 111.00204 * 295.00340 * 12 2 1 14 14 C 1.53032 * 109.52260 * 185.84105 * 13 12 2 15 15 C 1.53124 * 109.28012 * 300.82015 * 14 13 12 16 16 H 1.08999 * 109.52008 * 297.75553 * 15 14 13 17 17 O 1.42889 * 109.52572 * 177.55770 * 15 14 13 18 18 C 1.53119 * 109.15841 * 57.65244 * 15 14 13 19 19 H 1.08998 * 109.50338 * 182.40479 * 18 15 14 20 20 F 1.39908 * 109.50307 * 62.32941 * 18 15 14 21 21 C 1.46846 * 110.99617 * 59.21445 * 12 2 1 22 22 H 1.09000 * 109.47556 * 60.00275 * 1 2 3 23 23 H 1.09001 * 109.46798 * 180.02562 * 1 2 3 24 24 H 1.09005 * 109.47521 * 300.00203 * 1 2 3 25 25 H 0.97002 * 120.00322 * 180.02562 * 7 6 4 26 26 H 1.09001 * 109.45990 * 305.85570 * 13 12 2 27 27 H 1.08999 * 109.46398 * 65.83493 * 13 12 2 28 28 H 1.08999 * 109.50710 * 60.75864 * 14 13 12 29 29 H 1.08994 * 109.50574 * 180.83814 * 14 13 12 30 30 H 0.96701 * 114.00381 * 179.97438 * 17 15 14 31 31 H 1.08996 * 109.46231 * 294.17554 * 21 12 2 32 32 H 1.09004 * 109.46418 * 54.14394 * 21 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9428 0.8296 -2.6034 8 14 2.3214 -1.1205 -4.0079 9 1 1.8260 -2.5203 -4.0076 10 1 1.8260 -0.4207 -5.2204 11 1 3.8064 -1.1209 -4.0081 12 7 2.0196 -0.6924 1.1995 13 6 1.6488 0.0391 2.4176 14 6 2.2965 -0.6291 3.6325 15 6 1.8223 -2.0822 3.7230 16 1 0.7423 -2.1045 3.8691 17 8 2.4677 -2.7276 4.8224 18 6 2.1777 -2.8087 2.4229 19 1 1.8048 -3.8321 2.4642 20 9 3.5674 -2.8241 2.2613 21 6 1.5335 -2.0773 1.2430 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3634 0.5139 0.8900 25 1 0.7081 1.1607 -3.4845 26 1 1.9955 1.0697 2.3421 27 1 0.5649 0.0280 2.5321 28 1 3.3809 -0.6062 3.5254 29 1 2.0090 -0.0948 4.5380 30 1 2.2133 -3.6531 4.9397 31 1 0.4501 -2.0783 1.3628 32 1 1.7965 -2.5839 0.3143 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885497530.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:04 Heat of formation + Delta-G solvation = -98.413645 kcal Electronic energy + Delta-G solvation = -15695.267202 eV Core-core repulsion = 12991.051722 eV Total energy + Delta-G solvation = -2704.215480 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 217.122 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -47.03745 -38.49625 -36.47588 -33.41330 -31.26958 -30.10537 -27.83950 -25.31129 -23.45836 -22.76467 -20.46930 -18.89616 -17.31045 -16.32721 -16.04030 -15.32824 -14.99386 -14.61111 -14.30146 -13.46566 -13.17426 -12.82620 -12.58335 -12.53106 -11.91231 -11.49872 -11.36968 -11.32067 -10.85884 -10.79779 -10.56113 -10.47929 -10.10694 -10.08806 -9.74951 -9.50217 -8.89421 -8.40916 -7.21264 -6.03408 -4.07505 3.31950 3.36196 3.39965 4.21767 4.39498 4.70939 4.75681 4.94411 5.03788 5.28670 5.34819 5.52464 5.68353 5.90676 6.01239 6.08237 6.29638 6.35290 6.47586 6.59315 6.71157 6.78904 7.05660 7.42958 7.62911 7.65377 7.79907 8.06219 8.31813 8.54695 8.98148 9.57864 11.03627 Molecular weight = 217.12amu Principal moments of inertia in cm(-1) A = 0.045551 B = 0.008933 C = 0.007967 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 614.552693 B = 3133.649278 C = 3513.803920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.212 3.788 3 H 0.043 0.957 4 C -0.503 4.503 5 H 0.063 0.937 6 C 0.059 3.941 7 N -0.895 5.895 8 Si 0.897 3.103 9 H -0.278 1.278 10 H -0.288 1.288 11 H -0.276 1.276 12 N -0.526 5.526 13 C 0.054 3.946 14 C -0.108 4.108 15 C 0.080 3.920 16 H 0.064 0.936 17 O -0.561 6.561 18 C 0.066 3.934 19 H 0.074 0.926 20 F -0.197 7.197 21 C 0.037 3.963 22 H 0.090 0.910 23 H 0.028 0.972 24 H 0.009 0.991 25 H 0.261 0.739 26 H 0.077 0.923 27 H 0.029 0.971 28 H 0.081 0.919 29 H 0.068 0.932 30 H 0.373 0.627 31 H 0.041 0.959 32 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.504 -5.492 9.931 11.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.106 3.894 3 H 0.061 0.939 4 C -0.541 4.541 5 H 0.081 0.919 6 C -0.142 4.142 7 N -0.534 5.534 8 Si 0.725 3.275 9 H -0.204 1.204 10 H -0.214 1.214 11 H -0.201 1.201 12 N -0.250 5.250 13 C -0.075 4.075 14 C -0.146 4.146 15 C 0.021 3.979 16 H 0.082 0.918 17 O -0.366 6.366 18 C 0.029 3.971 19 H 0.092 0.908 20 F -0.178 7.178 21 C -0.092 4.092 22 H 0.108 0.892 23 H 0.047 0.953 24 H 0.028 0.972 25 H 0.071 0.929 26 H 0.095 0.905 27 H 0.047 0.953 28 H 0.100 0.900 29 H 0.086 0.914 30 H 0.220 0.780 31 H 0.059 0.941 32 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -0.758 -4.777 9.810 10.937 hybrid contribution -0.905 -0.980 -0.948 1.636 sum -1.662 -5.757 8.862 10.697 Atomic orbital electron populations 1.22419 1.00808 0.99235 1.00735 1.19313 0.89713 0.94691 0.85678 0.93926 1.21085 1.30721 1.12647 0.89669 0.91907 1.24921 0.95156 0.95108 0.99012 1.69868 1.36918 1.23020 1.23572 0.86574 0.79350 0.79544 0.82031 1.20386 1.21381 1.20149 1.62235 1.59612 1.00588 1.02563 1.22024 0.97049 0.98309 0.90108 1.21539 1.02901 0.92050 0.98084 1.22517 0.96011 0.94453 0.84944 0.91773 1.86557 1.70766 1.28782 1.50486 1.22407 0.77904 0.99639 0.97154 0.90768 1.92817 1.30600 1.97770 1.96618 1.22520 0.96644 0.92143 0.97887 0.89185 0.95289 0.97218 0.92907 0.90491 0.95327 0.90043 0.91363 0.78030 0.94053 0.88337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.04 8.28 37.16 0.31 -3.73 16 2 C 0.21 5.24 2.35 -68.86 -0.16 5.08 16 3 H 0.04 1.16 8.08 -51.93 -0.42 0.74 16 4 C -0.50 -13.62 7.86 -34.44 -0.27 -13.89 16 5 H 0.06 1.72 6.76 -52.49 -0.35 1.37 16 6 C 0.06 1.62 5.30 -17.82 -0.09 1.52 16 7 N -0.89 -25.18 11.32 55.43 0.63 -24.55 16 8 Si 0.90 21.28 29.54 -169.99 -5.02 16.26 16 9 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 10 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 11 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 12 N -0.53 -11.23 4.57 -228.08 -1.04 -12.27 16 13 C 0.05 0.97 5.02 -3.84 -0.02 0.95 16 14 C -0.11 -1.72 5.62 -26.65 -0.15 -1.87 16 15 C 0.08 1.17 3.35 -26.61 -0.09 1.08 16 16 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 17 O -0.56 -7.70 13.24 -35.23 -0.47 -8.17 16 18 C 0.07 1.06 3.83 -26.65 -0.10 0.96 16 19 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 20 F -0.20 -3.84 16.53 2.25 0.04 -3.80 16 21 C 0.04 0.71 4.42 -3.83 -0.02 0.69 16 22 H 0.09 2.34 6.07 -51.93 -0.32 2.03 16 23 H 0.03 0.65 6.52 -51.93 -0.34 0.31 16 24 H 0.01 0.19 6.65 -51.93 -0.35 -0.16 16 25 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 26 H 0.08 1.38 8.08 -51.93 -0.42 0.96 16 27 H 0.03 0.50 6.73 -51.93 -0.35 0.15 16 28 H 0.08 1.45 7.91 -51.93 -0.41 1.04 16 29 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 30 H 0.37 3.34 9.09 45.56 0.41 3.76 16 31 H 0.04 0.75 6.62 -51.93 -0.34 0.40 16 32 H 0.10 2.07 6.35 -51.93 -0.33 1.74 16 LS Contribution 254.12 15.07 3.83 3.83 Total: -1.00 -29.79 254.12 -6.25 -36.04 By element: Atomic # 1 Polarization: 5.50 SS G_CDS: -3.62 Total: 1.88 kcal Atomic # 6 Polarization: -8.62 SS G_CDS: -0.60 Total: -9.22 kcal Atomic # 7 Polarization: -36.41 SS G_CDS: -0.42 Total: -36.82 kcal Atomic # 8 Polarization: -7.70 SS G_CDS: -0.47 Total: -8.17 kcal Atomic # 9 Polarization: -3.84 SS G_CDS: 0.04 Total: -3.80 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 3.83 Total: 3.83 kcal Total: -29.79 -6.25 -36.04 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885497530.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.377 kcal (2) G-P(sol) polarization free energy of solvation -29.789 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.248 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.036 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds