Wall clock time and date at job start Mon Mar 30 2020 02:22:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09005 * 109.46590 * 2 1 4 4 C 1.50699 * 109.47219 * 239.99925 * 2 1 3 5 5 H 1.07997 * 120.00065 * 239.99777 * 4 2 1 6 6 C 1.37873 * 119.99943 * 59.99998 * 4 2 1 7 7 N 1.31511 * 120.00418 * 359.97438 * 6 4 2 8 8 Si 1.86806 * 119.99758 * 180.02562 * 6 4 2 9 9 H 1.48495 * 109.47248 * 59.99715 * 8 6 4 10 10 H 1.48504 * 109.47011 * 179.97438 * 8 6 4 11 11 H 1.48495 * 109.47128 * 299.99420 * 8 6 4 12 12 N 1.46902 * 109.47069 * 119.99339 * 2 1 3 13 13 C 1.46846 * 111.00204 * 295.00340 * 12 2 1 14 14 C 1.53032 * 109.52260 * 185.84105 * 13 12 2 15 15 C 1.53124 * 109.28012 * 300.82015 * 14 13 12 16 16 H 1.08999 * 109.52008 * 297.75553 * 15 14 13 17 17 O 1.42889 * 109.52572 * 177.55770 * 15 14 13 18 18 C 1.53119 * 109.15841 * 57.65244 * 15 14 13 19 19 H 1.08998 * 109.50338 * 182.40479 * 18 15 14 20 20 F 1.39908 * 109.50307 * 62.32941 * 18 15 14 21 21 C 1.46846 * 110.99617 * 59.21445 * 12 2 1 22 22 H 1.09000 * 109.47556 * 60.00275 * 1 2 3 23 23 H 1.09001 * 109.46798 * 180.02562 * 1 2 3 24 24 H 1.09005 * 109.47521 * 300.00203 * 1 2 3 25 25 H 0.97002 * 120.00322 * 180.02562 * 7 6 4 26 26 H 1.09001 * 109.45990 * 305.85570 * 13 12 2 27 27 H 1.08999 * 109.46398 * 65.83493 * 13 12 2 28 28 H 1.08999 * 109.50710 * 60.75864 * 14 13 12 29 29 H 1.08994 * 109.50574 * 180.83814 * 14 13 12 30 30 H 0.96701 * 114.00381 * 179.97438 * 17 15 14 31 31 H 1.08996 * 109.46231 * 294.17554 * 21 12 2 32 32 H 1.09004 * 109.46418 * 54.14394 * 21 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9428 0.8296 -2.6034 8 14 2.3214 -1.1205 -4.0079 9 1 1.8260 -2.5203 -4.0076 10 1 1.8260 -0.4207 -5.2204 11 1 3.8064 -1.1209 -4.0081 12 7 2.0196 -0.6924 1.1995 13 6 1.6488 0.0391 2.4176 14 6 2.2965 -0.6291 3.6325 15 6 1.8223 -2.0822 3.7230 16 1 0.7423 -2.1045 3.8691 17 8 2.4677 -2.7276 4.8224 18 6 2.1777 -2.8087 2.4229 19 1 1.8048 -3.8321 2.4642 20 9 3.5674 -2.8241 2.2613 21 6 1.5335 -2.0773 1.2430 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3634 0.5139 0.8900 25 1 0.7081 1.1607 -3.4845 26 1 1.9955 1.0697 2.3421 27 1 0.5649 0.0280 2.5321 28 1 3.3809 -0.6062 3.5254 29 1 2.0090 -0.0948 4.5380 30 1 2.2133 -3.6531 4.9397 31 1 0.4501 -2.0783 1.3628 32 1 1.7965 -2.5839 0.3143 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000885497530.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:04 Heat of formation + Delta-G solvation = -121.015191 kcal Electronic energy + Delta-G solvation = -15696.247279 eV Core-core repulsion = 12991.051722 eV Total energy + Delta-G solvation = -2705.195557 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 217.122 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -48.43350 -39.95400 -37.76724 -35.21067 -32.95238 -31.49835 -29.52777 -27.33943 -24.96122 -24.15242 -22.12377 -20.37043 -18.43268 -18.24169 -17.55871 -16.67005 -16.53624 -16.40672 -15.65197 -15.19825 -14.64663 -14.34166 -14.23158 -13.87991 -13.66510 -13.11964 -12.95349 -12.85197 -12.64760 -12.49998 -12.15507 -12.14796 -12.01707 -11.55086 -11.26629 -11.00173 -10.61760 -10.49405 -8.85734 -8.11844 -6.22632 1.41911 1.43739 1.51213 2.42138 3.12195 3.17616 3.31551 3.51945 3.65299 3.83303 4.09873 4.21345 4.35035 4.65533 4.65948 4.67681 4.83281 4.89619 4.91984 4.99454 5.03734 5.11145 5.30795 5.54073 5.70407 5.78650 6.18945 6.44841 6.73057 6.83868 6.90090 7.46660 8.93899 Molecular weight = 217.12amu Principal moments of inertia in cm(-1) A = 0.045551 B = 0.008933 C = 0.007967 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 614.552693 B = 3133.649278 C = 3513.803920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.216 3.784 3 H 0.006 0.994 4 C -0.517 4.517 5 H 0.053 0.947 6 C 0.014 3.986 7 N -0.919 5.919 8 Si 0.956 3.044 9 H -0.270 1.270 10 H -0.283 1.283 11 H -0.277 1.277 12 N -0.545 5.545 13 C 0.055 3.945 14 C -0.105 4.105 15 C 0.089 3.911 16 H 0.093 0.907 17 O -0.571 6.571 18 C 0.063 3.937 19 H 0.115 0.885 20 F -0.220 7.220 21 C 0.037 3.963 22 H 0.061 0.939 23 H 0.034 0.966 24 H 0.031 0.969 25 H 0.262 0.738 26 H 0.068 0.932 27 H 0.041 0.959 28 H 0.057 0.943 29 H 0.092 0.908 30 H 0.396 0.604 31 H 0.055 0.945 32 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.121 -6.822 11.078 13.182 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.109 3.891 3 H 0.024 0.976 4 C -0.556 4.556 5 H 0.071 0.929 6 C -0.185 4.185 7 N -0.559 5.559 8 Si 0.782 3.218 9 H -0.195 1.195 10 H -0.208 1.208 11 H -0.203 1.203 12 N -0.269 5.269 13 C -0.073 4.073 14 C -0.142 4.142 15 C 0.029 3.971 16 H 0.111 0.889 17 O -0.379 6.379 18 C 0.026 3.974 19 H 0.133 0.867 20 F -0.201 7.201 21 C -0.091 4.091 22 H 0.080 0.920 23 H 0.053 0.947 24 H 0.049 0.951 25 H 0.071 0.929 26 H 0.086 0.914 27 H 0.059 0.941 28 H 0.076 0.924 29 H 0.110 0.890 30 H 0.246 0.754 31 H 0.073 0.927 32 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -1.376 -6.134 10.980 12.652 hybrid contribution -0.697 -0.567 -1.250 1.539 sum -2.073 -6.701 9.730 11.995 Atomic orbital electron populations 1.22191 0.99731 0.99401 1.00341 1.19045 0.90396 0.92864 0.86786 0.97561 1.21333 1.30669 1.12504 0.91058 0.92911 1.25648 0.95371 0.95795 1.01699 1.69991 1.37715 1.24051 1.24103 0.85640 0.78555 0.78832 0.78767 1.19490 1.20847 1.20263 1.62085 1.60407 1.01868 1.02564 1.22052 0.97907 0.97865 0.89517 1.21468 1.01182 0.93776 0.97813 1.22384 0.97395 0.93028 0.84277 0.88934 1.86514 1.71087 1.30746 1.49579 1.22677 0.76339 1.01715 0.96622 0.86724 1.92773 1.32627 1.97945 1.96734 1.22501 0.97644 0.90706 0.98287 0.92012 0.94659 0.95052 0.92909 0.91359 0.94097 0.92441 0.88961 0.75414 0.92742 0.91051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.33 8.28 71.98 0.60 -6.73 16 2 C 0.22 10.87 2.35 44.17 0.10 10.98 16 3 H 0.01 0.37 8.08 -2.38 -0.02 0.35 16 4 C -0.52 -28.53 7.86 25.60 0.20 -28.32 16 5 H 0.05 2.95 6.76 -2.91 -0.02 2.93 16 6 C 0.01 0.75 5.30 84.65 0.45 1.20 16 7 N -0.92 -52.51 11.32 21.45 0.24 -52.27 16 8 Si 0.96 43.89 29.54 68.60 2.03 45.91 16 9 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 10 H -0.28 -12.67 7.11 99.48 0.71 -11.97 16 11 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 12 N -0.54 -23.17 4.57 -875.51 -4.00 -27.18 16 13 C 0.05 1.90 5.02 86.32 0.43 2.34 16 14 C -0.10 -3.11 5.62 30.65 0.17 -2.94 16 15 C 0.09 2.27 3.35 30.68 0.10 2.37 16 16 H 0.09 1.91 8.14 -2.39 -0.02 1.89 16 17 O -0.57 -13.53 13.24 -148.98 -1.97 -15.51 16 18 C 0.06 1.87 3.83 30.65 0.12 1.98 16 19 H 0.12 2.49 8.14 -2.39 -0.02 2.47 16 20 F -0.22 -8.27 16.53 44.97 0.74 -7.53 16 21 C 0.04 1.37 4.42 86.33 0.38 1.76 16 22 H 0.06 3.24 6.07 -2.39 -0.01 3.23 16 23 H 0.03 1.55 6.52 -2.39 -0.02 1.53 16 24 H 0.03 1.27 6.65 -2.38 -0.02 1.26 16 25 H 0.26 14.28 8.31 -92.71 -0.77 13.51 16 26 H 0.07 2.45 8.08 -2.39 -0.02 2.43 16 27 H 0.04 1.32 6.73 -2.39 -0.02 1.31 16 28 H 0.06 1.99 7.91 -2.39 -0.02 1.97 16 29 H 0.09 2.31 8.14 -2.39 -0.02 2.29 16 30 H 0.40 5.39 9.09 -74.06 -0.67 4.71 16 31 H 0.05 1.84 6.62 -2.39 -0.02 1.83 16 32 H 0.07 2.99 6.35 -2.38 -0.02 2.98 16 Total: -1.00 -64.47 254.12 0.04 -64.43 By element: Atomic # 1 Polarization: 9.06 SS G_CDS: 0.45 Total: 9.51 kcal Atomic # 6 Polarization: -19.93 SS G_CDS: 2.56 Total: -17.37 kcal Atomic # 7 Polarization: -75.68 SS G_CDS: -3.76 Total: -79.44 kcal Atomic # 8 Polarization: -13.53 SS G_CDS: -1.97 Total: -15.51 kcal Atomic # 9 Polarization: -8.27 SS G_CDS: 0.74 Total: -7.53 kcal Atomic # 14 Polarization: 43.89 SS G_CDS: 2.03 Total: 45.91 kcal Total: -64.47 0.04 -64.43 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885497530.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.584 kcal (2) G-P(sol) polarization free energy of solvation -64.474 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.058 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.431 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.015 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds