Wall clock time and date at job start Mon Mar 30 2020 02:22:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09001 * 109.46986 * 2 1 4 4 C 1.50694 * 109.47357 * 239.99982 * 2 1 3 5 5 H 1.08001 * 120.00092 * 245.57139 * 4 2 1 6 6 C 1.37883 * 120.00141 * 65.56997 * 4 2 1 7 7 N 1.31510 * 119.99488 * 8.38937 * 6 4 2 8 8 Si 1.86794 * 120.00189 * 188.39249 * 6 4 2 9 9 H 1.48491 * 109.47555 * 84.99637 * 8 6 4 10 10 H 1.48510 * 109.46991 * 204.99777 * 8 6 4 11 11 H 1.48500 * 109.47067 * 324.99288 * 8 6 4 12 12 N 1.46900 * 109.46950 * 120.00084 * 2 1 3 13 13 C 1.46848 * 110.99902 * 295.00082 * 12 2 1 14 14 C 1.53038 * 109.51477 * 174.16429 * 13 12 2 15 15 C 1.53099 * 109.28894 * 59.18526 * 14 13 12 16 16 H 1.09004 * 109.57594 * 62.27221 * 15 14 13 17 17 O 1.42900 * 109.52552 * 182.43266 * 15 14 13 18 18 C 1.53120 * 109.15278 * 302.34129 * 15 14 13 19 19 H 1.09004 * 109.50029 * 177.59992 * 18 15 14 20 20 F 1.39903 * 109.50054 * 297.70753 * 18 15 14 21 21 C 1.46840 * 111.00111 * 170.79392 * 12 2 1 22 22 H 1.08998 * 109.47432 * 305.10965 * 1 2 3 23 23 H 1.09006 * 109.46900 * 65.11358 * 1 2 3 24 24 H 1.08999 * 109.47139 * 185.10326 * 1 2 3 25 25 H 0.97002 * 119.99805 * 180.02562 * 7 6 4 26 26 H 1.08998 * 109.46241 * 294.17738 * 13 12 2 27 27 H 1.09005 * 109.46556 * 54.15687 * 13 12 2 28 28 H 1.08997 * 109.50422 * 179.11408 * 14 13 12 29 29 H 1.08996 * 109.50638 * 299.23310 * 14 13 12 30 30 H 0.96695 * 114.00279 * 299.67642 * 17 15 14 31 31 H 1.09006 * 109.46003 * 305.84894 * 21 12 2 32 32 H 1.09000 * 109.46632 * 65.82907 * 21 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.5771 -1.6380 -1.1338 6 6 1.7967 -0.1762 -2.4795 7 7 1.2819 1.0287 -2.5928 8 14 2.2083 -1.1638 -4.0106 9 1 1.0743 -2.0647 -4.3384 10 1 2.4496 -0.2382 -5.1467 11 1 3.4285 -1.9735 -3.7641 12 7 2.0197 -0.6925 1.1994 13 6 1.6488 0.0389 2.4176 14 6 2.0458 -0.7813 3.6472 15 6 3.5556 -1.0336 3.6209 16 1 4.0858 -0.0825 3.6728 17 8 3.9234 -1.8469 4.7367 18 6 3.9221 -1.7532 2.3200 19 1 5.0016 -1.8978 2.2758 20 9 3.2817 -2.9964 2.2776 21 6 3.4709 -0.9050 1.1289 22 1 -0.3634 0.5910 0.8407 23 1 -0.3633 0.4325 -0.9323 24 1 -0.3633 -1.0236 0.0914 25 1 1.1157 1.4044 -3.4715 26 1 2.1671 0.9975 2.4376 27 1 0.5720 0.2080 2.4261 28 1 1.7847 -0.2313 4.5513 29 1 1.5173 -1.7345 3.6350 30 1 3.7197 -1.4520 5.5955 31 1 3.7176 -1.4214 0.2011 32 1 3.9807 0.0580 1.1551 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885497531.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:06 Heat of formation + Delta-G solvation = -99.741660 kcal Electronic energy + Delta-G solvation = -15635.054340 eV Core-core repulsion = 12930.781272 eV Total energy + Delta-G solvation = -2704.273067 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 217.122 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -46.95141 -38.41701 -36.38425 -33.39388 -31.21191 -30.27263 -28.12783 -25.30084 -23.34520 -22.50861 -20.11759 -19.23778 -17.26514 -16.33739 -16.18409 -15.27209 -14.77051 -14.61065 -14.12484 -13.90394 -13.23704 -12.96394 -12.58282 -12.34414 -11.79697 -11.66207 -11.41130 -11.04762 -10.81817 -10.75561 -10.61337 -10.25138 -10.08684 -9.96582 -9.88102 -9.55050 -8.84051 -8.47406 -7.24361 -6.07529 -4.09176 3.30755 3.36860 3.40099 4.17417 4.38853 4.74369 4.84824 4.97933 5.09893 5.26374 5.39265 5.53783 5.67251 5.82977 5.93420 6.09246 6.32747 6.34153 6.55755 6.59389 6.76519 6.98945 7.08399 7.39294 7.62073 7.64898 7.78395 8.05233 8.20532 8.54721 8.97761 9.55440 11.01555 Molecular weight = 217.12amu Principal moments of inertia in cm(-1) A = 0.043892 B = 0.008953 C = 0.007953 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 637.775696 B = 3126.744885 C = 3519.956658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.212 3.788 3 H 0.007 0.993 4 C -0.512 4.512 5 H 0.065 0.935 6 C 0.062 3.938 7 N -0.891 5.891 8 Si 0.894 3.106 9 H -0.279 1.279 10 H -0.288 1.288 11 H -0.274 1.274 12 N -0.529 5.529 13 C 0.053 3.947 14 C -0.146 4.146 15 C 0.077 3.923 16 H 0.064 0.936 17 O -0.563 6.563 18 C 0.108 3.892 19 H 0.079 0.921 20 F -0.198 7.198 21 C 0.039 3.961 22 H 0.011 0.989 23 H 0.069 0.931 24 H 0.038 0.962 25 H 0.261 0.739 26 H 0.023 0.977 27 H 0.078 0.922 28 H 0.063 0.937 29 H 0.082 0.918 30 H 0.375 0.625 31 H 0.108 0.892 32 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.348 -0.834 10.627 11.173 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.106 3.894 3 H 0.025 0.975 4 C -0.550 4.550 5 H 0.083 0.917 6 C -0.140 4.140 7 N -0.529 5.529 8 Si 0.722 3.278 9 H -0.205 1.205 10 H -0.214 1.214 11 H -0.199 1.199 12 N -0.255 5.255 13 C -0.076 4.076 14 C -0.184 4.184 15 C 0.018 3.982 16 H 0.082 0.918 17 O -0.368 6.368 18 C 0.071 3.929 19 H 0.097 0.903 20 F -0.179 7.179 21 C -0.090 4.090 22 H 0.030 0.970 23 H 0.088 0.912 24 H 0.057 0.943 25 H 0.071 0.929 26 H 0.041 0.959 27 H 0.096 0.904 28 H 0.081 0.919 29 H 0.101 0.899 30 H 0.221 0.779 31 H 0.126 0.874 32 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 3.242 -1.576 10.007 10.636 hybrid contribution 0.279 0.765 -0.453 0.932 sum 3.521 -0.812 9.554 10.214 Atomic orbital electron populations 1.21736 0.97853 0.99057 0.99658 1.19250 0.92121 0.92461 0.85563 0.97519 1.21144 1.35824 1.08043 0.89976 0.91683 1.24935 0.95297 0.94673 0.99066 1.69962 1.44666 1.14456 1.23862 0.86576 0.78906 0.79929 0.82403 1.20480 1.21420 1.19893 1.62005 1.10828 1.49757 1.02861 1.22037 1.01224 0.94020 0.90324 1.22263 0.95723 1.02209 0.98210 1.22522 0.95447 0.93415 0.86822 0.91817 1.86547 1.85755 1.48251 1.16277 1.21681 0.96129 0.80952 0.94158 0.90262 1.92802 1.84117 1.43607 1.97366 1.22574 0.90410 0.98253 0.97731 0.97011 0.91244 0.94310 0.92904 0.95914 0.90380 0.91883 0.89934 0.77871 0.87442 0.94342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.99 8.86 37.16 0.33 -2.66 16 2 C 0.21 5.27 1.94 -68.86 -0.13 5.14 16 3 H 0.01 0.20 8.08 -51.93 -0.42 -0.22 16 4 C -0.51 -13.83 7.65 -34.44 -0.26 -14.09 16 5 H 0.07 1.77 6.29 -52.49 -0.33 1.44 16 6 C 0.06 1.70 5.18 -17.82 -0.09 1.61 16 7 N -0.89 -25.24 12.11 55.43 0.67 -24.57 16 8 Si 0.89 21.22 29.55 -169.99 -5.02 16.20 16 9 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 10 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 11 H -0.27 -6.42 7.11 56.52 0.40 -6.01 16 12 N -0.53 -11.35 4.45 -228.08 -1.02 -12.37 16 13 C 0.05 0.94 5.29 -3.83 -0.02 0.92 16 14 C -0.15 -2.19 5.59 -26.66 -0.15 -2.34 16 15 C 0.08 1.13 3.35 -26.62 -0.09 1.04 16 16 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 17 O -0.56 -7.76 13.24 -35.23 -0.47 -8.23 16 18 C 0.11 1.86 3.85 -26.65 -0.10 1.75 16 19 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 20 F -0.20 -4.02 16.53 2.25 0.04 -3.98 16 21 C 0.04 0.77 4.90 -3.84 -0.02 0.75 16 22 H 0.01 0.24 6.65 -51.93 -0.35 -0.11 16 23 H 0.07 1.80 6.77 -51.93 -0.35 1.45 16 24 H 0.04 0.91 8.14 -51.93 -0.42 0.49 16 25 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 26 H 0.02 0.40 8.14 -51.93 -0.42 -0.03 16 27 H 0.08 1.39 6.29 -51.93 -0.33 1.07 16 28 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.08 1.39 7.91 -51.93 -0.41 0.98 16 30 H 0.37 3.28 9.09 45.56 0.41 3.69 16 31 H 0.11 2.31 5.84 -51.93 -0.30 2.01 16 32 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 LS Contribution 257.87 15.07 3.89 3.89 Total: -1.00 -30.04 257.87 -6.19 -36.24 By element: Atomic # 1 Polarization: 4.44 SS G_CDS: -3.74 Total: 0.69 kcal Atomic # 6 Polarization: -7.33 SS G_CDS: -0.54 Total: -7.87 kcal Atomic # 7 Polarization: -36.59 SS G_CDS: -0.34 Total: -36.94 kcal Atomic # 8 Polarization: -7.76 SS G_CDS: -0.47 Total: -8.23 kcal Atomic # 9 Polarization: -4.02 SS G_CDS: 0.04 Total: -3.98 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Total LS contribution 3.89 Total: 3.89 kcal Total: -30.04 -6.19 -36.24 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885497531.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.505 kcal (2) G-P(sol) polarization free energy of solvation -30.042 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.548 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.236 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.742 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds