Wall clock time and date at job start Mon Mar 30 2020 02:59:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99772 * 2 1 4 4 H 1.48494 * 109.47230 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.47301 * 300.00265 * 3 2 1 6 6 H 1.48498 * 109.47430 * 60.00111 * 3 2 1 7 7 C 1.37871 * 120.00482 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00483 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99694 * 359.71466 * 7 2 1 10 10 H 1.09007 * 109.47098 * 60.28447 * 9 7 2 11 11 O 1.42902 * 109.47440 * 300.28198 * 9 7 2 12 12 C 1.50703 * 109.47151 * 180.27762 * 9 7 2 13 13 C 1.35101 * 126.40783 * 84.69260 * 12 9 7 14 14 N 1.33522 * 108.62601 * 179.83406 * 13 12 9 15 15 C 1.32557 * 109.15583 * 0.43625 * 14 13 12 16 16 C 1.40939 * 132.32870 * 179.73438 * 15 14 13 17 17 C 1.36020 * 119.32805 * 180.02562 * 16 15 14 18 18 C 1.40466 * 119.69400 * 359.97438 * 17 16 15 19 19 C 1.34954 * 120.30116 * 359.97438 * 18 17 16 20 20 N 1.36483 * 120.60942 * 0.02562 * 19 18 17 21 21 H 0.96995 * 120.00207 * 359.97438 * 1 2 3 22 22 H 0.96704 * 113.99514 * 299.99782 * 11 9 7 23 23 H 1.07996 * 125.69128 * 359.96676 * 13 12 9 24 24 H 1.07999 * 120.33053 * 0.03927 * 16 15 14 25 25 H 1.07994 * 120.15199 * 180.02562 * 17 16 15 26 26 H 1.08003 * 119.85216 * 180.02562 * 18 17 16 27 27 H 1.08007 * 119.69489 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7090 1.3465 -0.0006 5 1 1.8903 2.3966 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2511 -2.4991 0.0054 10 1 0.6244 -2.5609 -0.8844 11 8 0.4296 -2.5696 1.1725 12 6 2.2305 -3.6445 0.0104 13 6 2.8282 -4.1837 1.0954 14 7 3.6229 -5.1788 0.6941 15 6 3.5557 -5.2839 -0.6256 16 6 4.1862 -6.1493 -1.5421 17 6 3.9201 -6.0220 -2.8699 18 6 3.0234 -5.0336 -3.3083 19 6 2.4266 -4.2128 -2.4187 20 7 2.6845 -4.3297 -1.0835 21 1 -0.4850 0.8400 0.0004 22 1 0.9219 -2.5206 2.0035 23 1 2.6852 -3.8648 2.1172 24 1 4.8734 -6.9060 -1.1935 25 1 4.3954 -6.6783 -3.5838 26 1 2.8100 -4.9305 -4.3620 27 1 1.7384 -3.4565 -2.7664 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000953067773.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:59:43 Heat of formation + Delta-G solvation = 36.205176 kcal Electronic energy + Delta-G solvation = -14179.602167 eV Core-core repulsion = 11710.734416 eV Total energy + Delta-G solvation = -2468.867751 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 218.080 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -42.20702 -37.04477 -35.62639 -33.11458 -32.30649 -29.77076 -28.95849 -26.44683 -23.54333 -22.90269 -21.86848 -20.19771 -17.29782 -16.86791 -16.35166 -15.49755 -15.19004 -14.74032 -14.56557 -14.33086 -13.09042 -12.99554 -12.78772 -12.03164 -11.75049 -11.46155 -11.28782 -11.08054 -11.03272 -10.54128 -10.25111 -9.86515 -9.29229 -8.80206 -8.56601 -8.28167 -7.14086 -6.16293 -4.37704 1.15445 1.78096 3.15648 3.19504 3.27717 3.32359 3.50636 3.98109 4.28950 4.68785 4.95299 5.08454 5.19226 5.21180 5.44980 5.87020 5.99132 6.09485 6.15971 6.22004 6.40569 6.45914 6.91022 7.23414 7.44397 7.63176 7.68528 7.92300 8.43185 8.65612 9.13903 9.38967 10.85892 Molecular weight = 218.08amu Principal moments of inertia in cm(-1) A = 0.036909 B = 0.009023 C = 0.008348 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 758.435739 B = 3102.347887 C = 3353.346635 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.857 5.857 2 C 0.082 3.918 3 Si 0.895 3.105 4 H -0.272 1.272 5 H -0.281 1.281 6 H -0.280 1.280 7 C -0.566 4.566 8 H 0.059 0.941 9 C 0.299 3.701 10 H 0.063 0.937 11 O -0.551 6.551 12 C -0.029 4.029 13 C 0.010 3.990 14 N -0.496 5.496 15 C 0.192 3.808 16 C -0.082 4.082 17 C -0.113 4.113 18 C -0.166 4.166 19 C 0.081 3.919 20 N -0.359 5.359 21 H 0.264 0.736 22 H 0.352 0.648 23 H 0.174 0.826 24 H 0.142 0.858 25 H 0.134 0.866 26 H 0.144 0.856 27 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.926 -7.637 -5.359 10.550 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.492 5.492 2 C -0.125 4.125 3 Si 0.722 3.278 4 H -0.196 1.196 5 H -0.207 1.207 6 H -0.206 1.206 7 C -0.604 4.604 8 H 0.077 0.923 9 C 0.240 3.760 10 H 0.080 0.920 11 O -0.353 6.353 12 C -0.143 4.143 13 C -0.139 4.139 14 N -0.216 5.216 15 C -0.051 4.051 16 C -0.102 4.102 17 C -0.137 4.137 18 C -0.188 4.188 19 C -0.042 4.042 20 N -0.033 5.033 21 H 0.073 0.927 22 H 0.197 0.803 23 H 0.192 0.808 24 H 0.159 0.841 25 H 0.152 0.848 26 H 0.161 0.839 27 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 4.693 -8.012 -5.234 10.658 hybrid contribution 0.472 1.545 -0.175 1.625 sum 5.165 -6.467 -5.409 9.887 Atomic orbital electron populations 1.70071 1.05959 1.26867 1.46329 1.25038 0.94762 0.99276 0.93457 0.86506 0.80248 0.83189 0.77888 1.19600 1.20728 1.20566 1.21535 0.93314 0.90146 1.55425 0.92263 1.17840 0.85414 0.85700 0.87044 0.91951 1.86620 1.37278 1.96022 1.15346 1.23413 1.05582 1.00761 0.84554 1.22057 0.97380 0.95451 0.98969 1.70600 1.23612 1.20735 1.06669 1.20869 0.97914 0.95095 0.91193 1.20111 1.00360 0.98560 0.91167 1.20865 0.98838 0.98862 0.95128 1.20645 1.00630 0.97830 0.99658 1.21710 1.00660 1.00666 0.81149 1.42711 1.30308 1.24244 1.06043 0.92658 0.80316 0.80849 0.84069 0.84832 0.83858 0.82037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.20 12.83 55.43 0.71 -23.48 15 2 C 0.08 2.20 5.40 -17.82 -0.10 2.10 15 3 Si 0.89 20.61 29.54 -169.99 -5.02 15.59 15 4 H -0.27 -6.26 7.11 56.52 0.40 -5.86 15 5 H -0.28 -6.39 7.11 56.52 0.40 -5.99 15 6 H -0.28 -6.39 7.11 56.52 0.40 -5.99 15 7 C -0.57 -15.12 8.75 -34.44 -0.30 -15.42 15 8 H 0.06 1.62 7.74 -52.49 -0.41 1.21 15 9 C 0.30 7.47 3.24 -29.03 -0.09 7.37 15 10 H 0.06 1.66 7.97 -51.93 -0.41 1.25 15 11 O -0.55 -13.80 12.60 -35.23 -0.44 -14.24 15 12 C -0.03 -0.66 6.03 -81.47 -0.49 -1.15 15 13 C 0.01 0.22 11.21 -17.93 -0.20 0.02 15 14 N -0.50 -10.58 11.32 -12.78 -0.14 -10.73 15 15 C 0.19 3.79 7.81 -156.04 -1.22 2.57 15 16 C -0.08 -1.24 10.11 -39.36 -0.40 -1.64 15 17 C -0.11 -1.43 10.07 -39.54 -0.40 -1.83 15 18 C -0.17 -2.20 9.98 -39.91 -0.40 -2.60 15 19 C 0.08 1.36 10.82 -16.65 -0.18 1.18 15 20 N -0.36 -7.31 2.94 -58.46 -0.17 -7.48 15 21 H 0.26 7.02 8.31 -40.82 -0.34 6.68 15 22 H 0.35 7.66 8.21 45.56 0.37 8.03 15 23 H 0.17 3.26 7.58 -52.49 -0.40 2.86 15 24 H 0.14 1.79 8.06 -52.49 -0.42 1.36 15 25 H 0.13 1.19 8.06 -52.49 -0.42 0.76 15 26 H 0.14 1.38 8.06 -52.48 -0.42 0.96 15 27 H 0.16 2.57 7.92 -52.48 -0.42 2.15 15 LS Contribution 245.88 15.07 3.71 3.71 Total: -1.00 -31.81 245.88 -6.80 -38.62 By element: Atomic # 1 Polarization: 9.09 SS G_CDS: -1.66 Total: 7.43 kcal Atomic # 6 Polarization: -5.62 SS G_CDS: -3.78 Total: -9.40 kcal Atomic # 7 Polarization: -42.09 SS G_CDS: 0.39 Total: -41.69 kcal Atomic # 8 Polarization: -13.80 SS G_CDS: -0.44 Total: -14.24 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -5.02 Total: 15.59 kcal Total LS contribution 3.71 Total: 3.71 kcal Total: -31.81 -6.80 -38.62 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000953067773.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.822 kcal (2) G-P(sol) polarization free energy of solvation -31.812 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.805 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.617 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds