Wall clock time and date at job start Mon Mar 30 2020 02:59:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99772 * 2 1 4 4 H 1.48494 * 109.47230 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.47301 * 300.00265 * 3 2 1 6 6 H 1.48498 * 109.47430 * 60.00111 * 3 2 1 7 7 C 1.37871 * 120.00482 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00483 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99694 * 359.71466 * 7 2 1 10 10 H 1.09007 * 109.47098 * 60.28447 * 9 7 2 11 11 O 1.42902 * 109.47440 * 300.28198 * 9 7 2 12 12 C 1.50703 * 109.47151 * 180.27762 * 9 7 2 13 13 C 1.35101 * 126.40783 * 84.69260 * 12 9 7 14 14 N 1.33522 * 108.62601 * 179.83406 * 13 12 9 15 15 C 1.32557 * 109.15583 * 0.43625 * 14 13 12 16 16 C 1.40939 * 132.32870 * 179.73438 * 15 14 13 17 17 C 1.36020 * 119.32805 * 180.02562 * 16 15 14 18 18 C 1.40466 * 119.69400 * 359.97438 * 17 16 15 19 19 C 1.34954 * 120.30116 * 359.97438 * 18 17 16 20 20 N 1.36483 * 120.60942 * 0.02562 * 19 18 17 21 21 H 0.96995 * 120.00207 * 359.97438 * 1 2 3 22 22 H 0.96704 * 113.99514 * 299.99782 * 11 9 7 23 23 H 1.07996 * 125.69128 * 359.96676 * 13 12 9 24 24 H 1.07999 * 120.33053 * 0.03927 * 16 15 14 25 25 H 1.07994 * 120.15199 * 180.02562 * 17 16 15 26 26 H 1.08003 * 119.85216 * 180.02562 * 18 17 16 27 27 H 1.08007 * 119.69489 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7090 1.3465 -0.0006 5 1 1.8903 2.3966 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2511 -2.4991 0.0054 10 1 0.6244 -2.5609 -0.8844 11 8 0.4296 -2.5696 1.1725 12 6 2.2305 -3.6445 0.0104 13 6 2.8282 -4.1837 1.0954 14 7 3.6229 -5.1788 0.6941 15 6 3.5557 -5.2839 -0.6256 16 6 4.1862 -6.1493 -1.5421 17 6 3.9201 -6.0220 -2.8699 18 6 3.0234 -5.0336 -3.3083 19 6 2.4266 -4.2128 -2.4187 20 7 2.6845 -4.3297 -1.0835 21 1 -0.4850 0.8400 0.0004 22 1 0.9219 -2.5206 2.0035 23 1 2.6852 -3.8648 2.1172 24 1 4.8734 -6.9060 -1.1935 25 1 4.3954 -6.6783 -3.5838 26 1 2.8100 -4.9305 -4.3620 27 1 1.7384 -3.4565 -2.7664 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000953067773.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:59:43 Heat of formation + Delta-G solvation = 14.037946 kcal Electronic energy + Delta-G solvation = -14180.563410 eV Core-core repulsion = 11710.734416 eV Total energy + Delta-G solvation = -2469.828994 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 218.080 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -43.66489 -38.45773 -37.44729 -34.50820 -34.36053 -31.18324 -30.54557 -28.25016 -25.20877 -24.39970 -23.27368 -21.77049 -19.26111 -18.46241 -17.63226 -16.80390 -16.72804 -16.67132 -16.24513 -15.71948 -14.91939 -14.67014 -14.37581 -13.56612 -13.17603 -13.10854 -12.86459 -12.70798 -12.68160 -12.17060 -11.86287 -11.58719 -11.03838 -10.83472 -10.53140 -9.70116 -8.65511 -8.18417 -6.50625 -0.07558 0.44550 1.36450 1.39088 1.50893 1.76476 1.95901 2.36061 2.66044 3.02764 3.38262 3.69831 3.88952 4.09930 4.18588 4.28429 4.41012 4.59687 4.76448 4.90548 5.18037 5.28013 5.50422 5.59483 5.68868 5.74738 5.90273 6.24128 6.57372 6.90995 7.20211 7.36321 8.81019 Molecular weight = 218.08amu Principal moments of inertia in cm(-1) A = 0.036909 B = 0.009023 C = 0.008348 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 758.435739 B = 3102.347887 C = 3353.346635 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.036 3.964 3 Si 0.963 3.037 4 H -0.272 1.272 5 H -0.273 1.273 6 H -0.274 1.274 7 C -0.575 4.575 8 H 0.047 0.953 9 C 0.310 3.690 10 H 0.034 0.966 11 O -0.566 6.566 12 C -0.071 4.071 13 C 0.006 3.994 14 N -0.529 5.529 15 C 0.188 3.812 16 C -0.103 4.103 17 C -0.082 4.082 18 C -0.134 4.134 19 C 0.032 3.968 20 N -0.365 5.365 21 H 0.267 0.733 22 H 0.364 0.636 23 H 0.185 0.815 24 H 0.169 0.831 25 H 0.189 0.811 26 H 0.190 0.810 27 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.574 -8.618 -7.440 13.147 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.168 4.168 3 Si 0.787 3.213 4 H -0.197 1.197 5 H -0.198 1.198 6 H -0.199 1.199 7 C -0.613 4.613 8 H 0.065 0.935 9 C 0.251 3.749 10 H 0.051 0.949 11 O -0.370 6.370 12 C -0.185 4.185 13 C -0.143 4.143 14 N -0.250 5.250 15 C -0.056 4.056 16 C -0.123 4.123 17 C -0.106 4.106 18 C -0.154 4.154 19 C -0.090 4.090 20 N -0.039 5.039 21 H 0.076 0.924 22 H 0.210 0.790 23 H 0.202 0.798 24 H 0.186 0.814 25 H 0.207 0.793 26 H 0.207 0.793 27 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 6.340 -8.991 -7.325 13.217 hybrid contribution 0.010 1.686 0.279 1.709 sum 6.350 -7.305 -7.046 11.972 Atomic orbital electron populations 1.70177 1.07427 1.27891 1.47386 1.25814 0.95500 1.02569 0.92882 0.85459 0.78648 0.78948 0.78234 1.19666 1.19825 1.19912 1.21693 0.92767 0.91476 1.55329 0.93462 1.17397 0.85141 0.86516 0.85833 0.94873 1.86537 1.38144 1.96186 1.16112 1.22855 1.07448 1.02055 0.86140 1.22271 0.97170 0.95452 0.99374 1.70583 1.24926 1.21513 1.07974 1.21714 0.97281 0.95086 0.91477 1.20635 1.01203 0.98822 0.91668 1.21551 0.96425 0.97702 0.94878 1.21333 0.97732 0.95246 1.01085 1.22161 1.03152 1.03099 0.80576 1.42797 1.30250 1.24047 1.06788 0.92391 0.79004 0.79795 0.81393 0.79344 0.79257 0.82544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -51.56 12.83 21.45 0.28 -51.28 15 2 C 0.04 1.97 5.40 84.65 0.46 2.43 15 3 Si 0.96 42.79 29.54 68.60 2.03 44.81 15 4 H -0.27 -12.00 7.11 99.48 0.71 -11.29 15 5 H -0.27 -11.68 7.11 99.48 0.71 -10.97 15 6 H -0.27 -11.83 7.11 99.48 0.71 -11.13 15 7 C -0.57 -31.75 8.75 25.60 0.22 -31.53 15 8 H 0.05 2.67 7.74 -2.91 -0.02 2.64 15 9 C 0.31 16.28 3.24 29.10 0.09 16.38 15 10 H 0.03 1.90 7.97 -2.38 -0.02 1.88 15 11 O -0.57 -29.74 12.60 -148.98 -1.88 -31.61 15 12 C -0.07 -3.34 6.03 41.06 0.25 -3.09 15 13 C 0.01 0.28 11.21 83.71 0.94 1.22 15 14 N -0.53 -22.87 11.32 -194.35 -2.20 -25.07 15 15 C 0.19 7.28 7.81 134.11 1.05 8.33 15 16 C -0.10 -2.80 10.11 22.42 0.23 -2.57 15 17 C -0.08 -1.62 10.07 22.30 0.22 -1.39 15 18 C -0.13 -2.96 9.98 22.06 0.22 -2.74 15 19 C 0.03 1.05 10.82 83.21 0.90 1.95 15 20 N -0.37 -15.05 2.94 -338.87 -1.00 -16.05 15 21 H 0.27 14.44 8.31 -92.71 -0.77 13.67 15 22 H 0.36 16.65 8.21 -74.05 -0.61 16.04 15 23 H 0.19 7.28 7.58 -2.91 -0.02 7.26 15 24 H 0.17 3.58 8.06 -2.91 -0.02 3.56 15 25 H 0.19 1.79 8.06 -2.91 -0.02 1.77 15 26 H 0.19 2.46 8.06 -2.91 -0.02 2.44 15 27 H 0.16 5.13 7.92 -2.91 -0.02 5.11 15 Total: -1.00 -71.64 245.88 2.39 -69.25 By element: Atomic # 1 Polarization: 20.38 SS G_CDS: 0.59 Total: 20.97 kcal Atomic # 6 Polarization: -15.59 SS G_CDS: 4.58 Total: -11.01 kcal Atomic # 7 Polarization: -89.48 SS G_CDS: -2.92 Total: -92.41 kcal Atomic # 8 Polarization: -29.74 SS G_CDS: -1.88 Total: -31.61 kcal Atomic # 14 Polarization: 42.79 SS G_CDS: 2.03 Total: 44.81 kcal Total: -71.64 2.39 -69.25 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000953067773.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.291 kcal (2) G-P(sol) polarization free energy of solvation -71.645 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.646 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.253 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.038 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds