Wall clock time and date at job start Mon Mar 30 2020 02:35:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13602 * 1 3 3 C 1.43202 * 179.97438 * 2 1 4 4 C 1.39930 * 120.89435 * 104.57984 * 3 2 1 5 5 C 1.38407 * 119.20135 * 179.97438 * 4 3 2 6 6 N 1.31513 * 121.05610 * 0.02562 * 5 4 3 7 7 C 1.32782 * 121.96828 * 359.69011 * 6 5 4 8 8 C 1.47980 * 119.66028 * 180.29187 * 7 6 5 9 9 O 1.21477 * 119.99848 * 180.28732 * 8 7 6 10 10 O 1.34691 * 119.99920 * 0.28083 * 8 7 6 11 11 C 1.34823 * 116.99597 * 180.02562 * 10 8 7 12 12 H 1.08000 * 120.00148 * 0.02562 * 11 10 8 13 13 C 1.38863 * 119.99545 * 180.02562 * 11 10 8 14 14 N 1.31381 * 119.99403 * 179.97438 * 13 11 10 15 15 Si 1.86802 * 120.00039 * 0.02562 * 13 11 10 16 16 H 1.48491 * 109.47138 * 89.99921 * 15 13 11 17 17 H 1.48504 * 109.46659 * 209.99833 * 15 13 11 18 18 H 1.48497 * 109.47225 * 329.99619 * 15 13 11 19 19 C 1.39266 * 120.67636 * 0.57685 * 7 6 5 20 20 H 1.08007 * 120.39952 * 359.95527 * 4 3 2 21 21 H 1.08001 * 119.47698 * 179.97438 * 5 4 3 22 22 H 0.97003 * 119.99294 * 179.97438 * 14 13 11 23 23 H 1.08002 * 120.56220 * 179.73853 * 19 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2864 0.3032 -1.1621 5 6 4.6699 0.2941 -1.1224 6 7 5.3149 0.0058 -0.0131 7 6 4.6780 -0.2823 1.1158 8 6 5.4551 -0.5929 2.3362 9 8 4.8788 -0.8625 3.3710 10 8 6.8014 -0.5769 2.2996 11 6 7.4483 -0.8695 3.4457 12 1 6.8869 -1.1031 4.3382 13 6 8.8366 -0.8706 3.4785 14 7 9.4670 -1.1553 4.5954 15 14 9.8076 -0.4659 1.9348 16 1 10.0577 0.9966 1.8766 17 1 11.1043 -1.1892 1.9620 18 1 9.0328 -0.8837 0.7389 19 6 3.2862 -0.3010 1.1616 20 1 2.7675 0.5408 -2.0791 21 1 5.2288 0.5265 -2.0168 22 1 10.4367 -1.1565 4.6182 23 1 2.7701 -0.5397 2.0798 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001323698142.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:47 Heat of formation + Delta-G solvation = -4.358900 kcal Electronic energy + Delta-G solvation = -13220.935931 eV Core-core repulsion = 10614.476095 eV Total energy + Delta-G solvation = -2606.459836 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 218.048 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -40.49832 -38.90382 -36.85987 -35.51645 -32.94317 -32.45240 -31.50997 -26.28781 -25.03223 -23.88559 -21.33716 -18.92828 -18.10811 -17.14010 -16.07935 -15.87453 -15.29494 -15.14746 -14.51291 -14.26362 -13.94266 -13.25343 -13.18701 -13.18387 -12.62731 -12.33093 -11.83406 -11.37730 -10.59258 -10.43171 -9.97969 -9.87913 -9.78953 -9.34189 -9.29272 -8.80214 -6.54431 -4.22217 0.38175 0.73897 2.34214 2.64447 3.13522 3.20277 3.30911 3.38576 3.43216 3.78681 4.02885 4.18354 4.41839 4.63787 4.84536 4.98760 5.01530 5.43941 5.56663 5.73056 6.08301 6.47158 7.15487 7.55302 7.75037 7.88093 8.46293 8.82544 9.53474 10.51645 Molecular weight = 218.05amu Principal moments of inertia in cm(-1) A = 0.051465 B = 0.007316 C = 0.006420 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 543.923865 B = 3826.229178 C = 4360.299298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.404 5.404 2 C 0.260 3.740 3 C 0.010 3.990 4 C -0.122 4.122 5 C 0.104 3.896 6 N -0.427 5.427 7 C 0.139 3.861 8 C 0.441 3.559 9 O -0.533 6.533 10 O -0.212 6.212 11 C -0.370 4.370 12 H 0.114 0.886 13 C 0.068 3.932 14 N -0.856 5.856 15 Si 0.906 3.094 16 H -0.271 1.271 17 H -0.281 1.281 18 H -0.250 1.250 19 C -0.077 4.077 20 H 0.147 0.853 21 H 0.171 0.829 22 H 0.284 0.716 23 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.101 3.176 -12.569 14.781 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.079 5.079 2 C -0.056 4.056 3 C -0.001 4.001 4 C -0.145 4.145 5 C -0.056 4.056 6 N -0.139 5.139 7 C 0.002 3.998 8 C 0.288 3.712 9 O -0.430 6.430 10 O -0.118 6.118 11 C -0.446 4.446 12 H 0.132 0.868 13 C -0.139 4.139 14 N -0.493 5.493 15 Si 0.730 3.270 16 H -0.196 1.196 17 H -0.207 1.207 18 H -0.173 1.173 19 C -0.100 4.100 20 H 0.165 0.835 21 H 0.188 0.812 22 H 0.095 0.905 23 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -7.848 3.059 -12.142 14.777 hybrid contribution 0.065 0.150 -0.484 0.511 sum -7.783 3.209 -12.626 15.175 Atomic orbital electron populations 1.81262 1.11719 1.07847 1.07078 1.25357 0.92224 0.94039 0.93952 1.16042 0.84950 1.03825 0.95259 1.22373 0.95824 0.98621 0.97663 1.22894 0.90764 0.95443 0.96472 1.67788 1.41030 1.06695 0.98384 1.20390 0.89882 0.97802 0.91716 1.19817 0.82401 0.82529 0.86461 1.90713 1.70885 1.49936 1.31434 1.83607 1.17953 1.71683 1.38544 1.20872 0.90185 1.46090 0.87408 0.86833 1.24649 0.95568 0.95206 0.98450 1.69582 1.10032 1.43472 1.26216 0.86169 0.78710 0.79172 0.82924 1.19575 1.20663 1.17348 1.22100 0.93753 0.95704 0.98477 0.83496 0.81157 0.90550 0.82379 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.40 -5.52 18.54 41.84 0.78 -4.74 14 2 C 0.26 3.10 15.40 -22.47 -0.35 2.75 14 3 C 0.01 0.12 5.75 -106.73 -0.61 -0.50 14 4 C -0.12 -1.11 9.86 -38.89 -0.38 -1.50 14 5 C 0.10 1.14 11.17 -17.63 -0.20 0.94 14 6 N -0.43 -7.02 10.09 -9.89 -0.10 -7.12 14 7 C 0.14 2.49 6.74 -83.08 -0.56 1.93 14 8 C 0.44 10.36 7.88 34.72 0.27 10.63 14 9 O -0.53 -13.65 15.56 -19.25 -0.30 -13.95 14 10 O -0.21 -5.57 8.38 -21.44 -0.18 -5.75 14 11 C -0.37 -10.67 10.11 30.96 0.31 -10.35 14 12 H 0.11 3.56 7.09 -52.49 -0.37 3.19 14 13 C 0.07 1.88 5.50 -17.51 -0.10 1.78 14 14 N -0.86 -24.30 13.95 55.49 0.77 -23.52 14 15 Si 0.91 20.83 28.62 -169.99 -4.86 15.96 14 16 H -0.27 -6.08 7.11 56.52 0.40 -5.68 14 17 H -0.28 -6.18 7.11 56.52 0.40 -5.78 14 18 H -0.25 -5.73 7.11 56.52 0.40 -5.32 14 19 C -0.08 -1.12 9.38 -38.59 -0.36 -1.48 14 20 H 0.15 0.82 8.06 -52.48 -0.42 0.40 14 21 H 0.17 1.23 8.06 -52.49 -0.42 0.81 14 22 H 0.28 7.32 8.31 -40.82 -0.34 6.98 14 23 H 0.16 2.24 7.64 -52.49 -0.40 1.84 14 LS Contribution 237.43 15.07 3.58 3.58 Total: -1.00 -31.85 237.43 -3.04 -34.89 By element: Atomic # 1 Polarization: -2.81 SS G_CDS: -0.75 Total: -3.56 kcal Atomic # 6 Polarization: 6.18 SS G_CDS: -1.97 Total: 4.21 kcal Atomic # 7 Polarization: -36.84 SS G_CDS: 1.45 Total: -35.39 kcal Atomic # 8 Polarization: -19.21 SS G_CDS: -0.48 Total: -19.69 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -4.86 Total: 15.96 kcal Total LS contribution 3.58 Total: 3.58 kcal Total: -31.85 -3.04 -34.89 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001323698142.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.533 kcal (2) G-P(sol) polarization free energy of solvation -31.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.892 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.359 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds