Wall clock time and date at job start Mon Mar 30 2020 02:52:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86797 * 120.00203 * 2 1 4 4 H 1.48501 * 109.47171 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47513 * 300.00344 * 3 2 1 6 6 H 1.48499 * 109.47028 * 60.00236 * 3 2 1 7 7 C 1.37876 * 119.99932 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00416 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99955 * 359.97438 * 7 2 1 10 10 H 1.08997 * 109.47605 * 300.00424 * 9 7 2 11 11 O 1.42900 * 109.47034 * 60.00586 * 9 7 2 12 12 C 1.50703 * 109.47159 * 180.02562 * 9 7 2 13 13 C 1.35629 * 120.20628 * 265.00144 * 12 9 7 14 14 C 1.39679 * 121.82097 * 179.97438 * 13 12 9 15 15 C 1.35655 * 121.72336 * 0.02562 * 14 13 12 16 16 C 1.41124 * 119.53879 * 0.02562 * 15 14 13 17 17 C 1.38246 * 134.81928 * 179.97438 * 16 15 14 18 18 N 1.33992 * 107.90625 * 179.97438 * 17 16 15 19 19 H 0.96997 * 125.02188 * 179.97438 * 18 17 16 20 20 N 1.39956 * 109.95647 * 0.02562 * 18 17 16 21 21 C 1.32062 * 108.96209 * 359.97438 * 20 18 17 22 22 H 0.97005 * 120.00052 * 359.97438 * 1 2 3 23 23 H 0.96706 * 114.00204 * 59.99951 * 11 9 7 24 24 H 1.07998 * 119.09017 * 0.02769 * 13 12 9 25 25 H 1.08001 * 119.14237 * 180.02562 * 14 13 12 26 26 H 1.08003 * 120.23440 * 179.72159 * 15 14 13 27 27 H 1.07998 * 126.04691 * 359.94457 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3965 -1.2124 6 1 1.8905 2.3963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 1 0.6246 -2.5571 0.8896 11 8 0.4291 -2.5746 -1.1671 12 6 2.2303 -3.6446 -0.0005 13 6 2.5960 -4.2297 -1.1682 14 6 3.5011 -5.2928 -1.2075 15 6 4.0607 -5.7953 -0.0785 16 6 3.7250 -5.2358 1.1729 17 6 4.0899 -5.4876 2.4823 18 7 3.4370 -4.6189 3.2663 19 1 3.5110 -4.5767 4.2325 20 7 2.6318 -3.7823 2.4850 21 6 2.7718 -4.1157 1.2149 22 1 -0.4850 0.8401 0.0004 23 1 0.9210 -2.5291 -1.9985 24 1 2.1766 -3.8628 -2.0933 25 1 3.7624 -5.7262 -2.1616 26 1 4.7544 -6.6210 -0.1363 27 1 4.7789 -6.2500 2.8147 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001535652382.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:52:44 Heat of formation + Delta-G solvation = 43.189339 kcal Electronic energy + Delta-G solvation = -14131.646437 eV Core-core repulsion = 11663.081543 eV Total energy + Delta-G solvation = -2468.564895 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 218.080 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.75260 -37.22628 -35.08148 -32.09454 -31.65530 -30.03643 -28.59492 -26.44750 -23.87435 -22.16219 -21.30719 -19.28079 -17.57659 -16.92992 -16.25769 -15.57507 -14.55765 -14.38969 -14.19601 -13.98122 -13.03591 -12.71678 -12.40122 -11.61452 -11.47884 -11.06562 -11.01035 -10.87474 -10.73154 -10.15284 -10.05869 -9.67707 -9.03128 -8.55128 -8.25959 -8.15298 -6.94367 -5.93504 -4.11529 1.16761 2.39651 2.96636 3.11421 3.31607 3.39116 3.44334 4.39069 4.55007 4.77211 4.99462 5.31513 5.48662 5.65507 5.72994 5.92703 6.19583 6.24862 6.43404 6.75854 6.99228 7.04348 7.22360 7.45582 7.51785 7.83537 7.92258 8.12638 8.21418 8.89953 9.39248 9.62525 11.09497 Molecular weight = 218.08amu Principal moments of inertia in cm(-1) A = 0.032191 B = 0.009825 C = 0.008661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 869.605235 B = 2849.109466 C = 3232.013613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.860 5.860 2 C 0.079 3.921 3 Si 0.891 3.109 4 H -0.273 1.273 5 H -0.282 1.282 6 H -0.283 1.283 7 C -0.552 4.552 8 H 0.056 0.944 9 C 0.262 3.738 10 H 0.072 0.928 11 O -0.560 6.560 12 C -0.040 4.040 13 C -0.118 4.118 14 C -0.127 4.127 15 C -0.089 4.089 16 C -0.199 4.199 17 C 0.052 3.948 18 N -0.437 5.437 19 H 0.438 0.562 20 N -0.279 5.279 21 C 0.116 3.884 22 H 0.260 0.740 23 H 0.345 0.655 24 H 0.123 0.877 25 H 0.113 0.887 26 H 0.113 0.887 27 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.471 -10.829 2.420 13.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.496 5.496 2 C -0.127 4.127 3 Si 0.718 3.282 4 H -0.197 1.197 5 H -0.208 1.208 6 H -0.209 1.209 7 C -0.590 4.590 8 H 0.074 0.926 9 C 0.205 3.795 10 H 0.089 0.911 11 O -0.363 6.363 12 C -0.043 4.043 13 C -0.141 4.141 14 C -0.146 4.146 15 C -0.109 4.109 16 C -0.209 4.209 17 C -0.103 4.103 18 N -0.138 5.138 19 H 0.281 0.719 20 N -0.106 5.106 21 C -0.039 4.039 22 H 0.070 0.930 23 H 0.190 0.810 24 H 0.141 0.859 25 H 0.131 0.869 26 H 0.131 0.869 27 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges 7.215 -9.945 3.722 12.838 hybrid contribution 1.555 0.416 -0.278 1.634 sum 8.770 -9.529 3.445 13.401 Atomic orbital electron populations 1.70091 1.05876 1.26309 1.47356 1.25028 0.94721 0.99028 0.93910 0.86575 0.80244 0.83715 0.77633 1.19743 1.20825 1.20896 1.21483 0.93081 0.90337 1.54075 0.92586 1.18419 0.86813 0.87817 0.86482 0.91087 1.86629 1.38076 1.96223 1.15381 1.20371 0.98041 0.97248 0.88650 1.20312 0.98964 0.97055 0.97724 1.20487 0.98674 0.97948 0.97514 1.19958 1.00755 0.99912 0.90321 1.19672 1.05406 1.02547 0.93321 1.22445 0.99988 0.97051 0.90861 1.46401 1.32653 1.24695 1.10050 0.71919 1.77870 1.15892 1.14188 1.02664 1.20831 0.96413 0.94533 0.92130 0.93027 0.80982 0.85943 0.86855 0.86892 0.80400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -26.09 12.84 55.43 0.71 -25.38 15 2 C 0.08 2.28 5.40 -17.82 -0.10 2.18 15 3 Si 0.89 21.94 29.54 -169.99 -5.02 16.92 15 4 H -0.27 -6.66 7.11 56.52 0.40 -6.26 15 5 H -0.28 -6.81 7.11 56.52 0.40 -6.41 15 6 H -0.28 -6.91 7.11 56.52 0.40 -6.51 15 7 C -0.55 -15.89 8.75 -34.44 -0.30 -16.19 15 8 H 0.06 1.63 7.74 -52.49 -0.41 1.22 15 9 C 0.26 7.10 3.09 -29.03 -0.09 7.01 15 10 H 0.07 2.16 8.13 -51.93 -0.42 1.73 15 11 O -0.56 -14.87 12.37 -35.23 -0.44 -15.30 15 12 C -0.04 -0.92 5.02 -104.45 -0.52 -1.45 15 13 C -0.12 -2.33 9.21 -39.98 -0.37 -2.70 15 14 C -0.13 -2.08 9.90 -39.97 -0.40 -2.48 15 15 C -0.09 -1.40 10.09 -39.41 -0.40 -1.80 15 16 C -0.20 -3.50 6.33 -105.19 -0.67 -4.17 15 17 C 0.05 0.70 12.08 -16.61 -0.20 0.50 15 18 N -0.44 -6.45 7.18 30.84 0.22 -6.23 15 19 H 0.44 4.45 8.96 -182.71 -1.64 2.81 15 20 N -0.28 -5.93 12.70 33.26 0.42 -5.51 15 21 C 0.12 2.54 7.21 -83.05 -0.60 1.94 15 22 H 0.26 7.41 8.31 -40.82 -0.34 7.07 15 23 H 0.35 7.94 7.30 45.56 0.33 8.27 15 24 H 0.12 2.23 6.30 -52.49 -0.33 1.89 15 25 H 0.11 1.48 8.06 -52.49 -0.42 1.06 15 26 H 0.11 1.35 8.06 -52.48 -0.42 0.93 15 27 H 0.18 1.43 8.06 -52.49 -0.42 1.01 15 LS Contribution 243.92 15.07 3.68 3.68 Total: -1.00 -35.19 243.92 -6.93 -42.12 By element: Atomic # 1 Polarization: 9.70 SS G_CDS: -2.87 Total: 6.83 kcal Atomic # 6 Polarization: -13.50 SS G_CDS: -3.64 Total: -17.14 kcal Atomic # 7 Polarization: -38.47 SS G_CDS: 1.36 Total: -37.11 kcal Atomic # 8 Polarization: -14.87 SS G_CDS: -0.44 Total: -15.30 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.92 kcal Total LS contribution 3.68 Total: 3.68 kcal Total: -35.19 -6.93 -42.12 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001535652382.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.311 kcal (2) G-P(sol) polarization free energy of solvation -35.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.120 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.121 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds