Wall clock time and date at job start Mon Mar 30 2020 02:52:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86797 * 120.00203 * 2 1 4 4 H 1.48501 * 109.47171 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47513 * 300.00344 * 3 2 1 6 6 H 1.48499 * 109.47028 * 60.00236 * 3 2 1 7 7 C 1.37876 * 119.99932 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00416 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99955 * 359.97438 * 7 2 1 10 10 H 1.08997 * 109.47605 * 300.00424 * 9 7 2 11 11 O 1.42900 * 109.47034 * 60.00586 * 9 7 2 12 12 C 1.50703 * 109.47159 * 180.02562 * 9 7 2 13 13 C 1.35629 * 120.20628 * 265.00144 * 12 9 7 14 14 C 1.39679 * 121.82097 * 179.97438 * 13 12 9 15 15 C 1.35655 * 121.72336 * 0.02562 * 14 13 12 16 16 C 1.41124 * 119.53879 * 0.02562 * 15 14 13 17 17 C 1.38246 * 134.81928 * 179.97438 * 16 15 14 18 18 N 1.33992 * 107.90625 * 179.97438 * 17 16 15 19 19 H 0.96997 * 125.02188 * 179.97438 * 18 17 16 20 20 N 1.39956 * 109.95647 * 0.02562 * 18 17 16 21 21 C 1.32062 * 108.96209 * 359.97438 * 20 18 17 22 22 H 0.97005 * 120.00052 * 359.97438 * 1 2 3 23 23 H 0.96706 * 114.00204 * 59.99951 * 11 9 7 24 24 H 1.07998 * 119.09017 * 0.02769 * 13 12 9 25 25 H 1.08001 * 119.14237 * 180.02562 * 14 13 12 26 26 H 1.08003 * 120.23440 * 179.72159 * 15 14 13 27 27 H 1.07998 * 126.04691 * 359.94457 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3965 -1.2124 6 1 1.8905 2.3963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 1 0.6246 -2.5571 0.8896 11 8 0.4291 -2.5746 -1.1671 12 6 2.2303 -3.6446 -0.0005 13 6 2.5960 -4.2297 -1.1682 14 6 3.5011 -5.2928 -1.2075 15 6 4.0607 -5.7953 -0.0785 16 6 3.7250 -5.2358 1.1729 17 6 4.0899 -5.4876 2.4823 18 7 3.4370 -4.6189 3.2663 19 1 3.5110 -4.5767 4.2325 20 7 2.6318 -3.7823 2.4850 21 6 2.7718 -4.1157 1.2149 22 1 -0.4850 0.8401 0.0004 23 1 0.9210 -2.5291 -1.9985 24 1 2.1766 -3.8628 -2.0933 25 1 3.7624 -5.7262 -2.1616 26 1 4.7544 -6.6210 -0.1363 27 1 4.7789 -6.2500 2.8147 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001535652382.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:52:44 Heat of formation + Delta-G solvation = 15.065737 kcal Electronic energy + Delta-G solvation = -14132.865968 eV Core-core repulsion = 11663.081543 eV Total energy + Delta-G solvation = -2469.784426 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 218.080 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -42.05419 -38.84409 -36.82131 -34.31051 -33.09999 -31.43150 -30.08293 -28.35790 -25.49681 -23.89168 -22.65729 -20.69587 -19.11189 -18.83196 -17.60150 -17.15906 -16.71055 -15.82038 -15.73459 -15.52155 -14.80492 -14.22950 -14.03498 -13.44088 -13.20982 -12.85792 -12.73803 -12.48698 -12.30489 -12.06854 -11.63135 -11.17974 -10.89117 -10.72782 -10.24224 -9.54192 -8.41313 -8.07426 -6.40288 -0.10526 1.03359 1.35201 1.36105 1.49329 1.65555 2.03430 2.37349 3.06617 3.10113 3.51403 3.87036 4.24186 4.38474 4.40270 4.48423 4.71703 4.80316 4.93975 5.25106 5.44683 5.60995 5.66544 5.79596 6.02897 6.04517 6.20970 6.45307 6.68758 6.79706 7.29041 7.49176 8.89927 Molecular weight = 218.08amu Principal moments of inertia in cm(-1) A = 0.032191 B = 0.009825 C = 0.008661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 869.605235 B = 2849.109466 C = 3232.013613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.024 3.976 3 Si 0.964 3.036 4 H -0.269 1.269 5 H -0.270 1.270 6 H -0.278 1.278 7 C -0.562 4.562 8 H 0.046 0.954 9 C 0.272 3.728 10 H 0.015 0.985 11 O -0.576 6.576 12 C -0.106 4.106 13 C -0.096 4.096 14 C -0.159 4.159 15 C -0.051 4.051 16 C -0.238 4.238 17 C 0.109 3.891 18 N -0.422 5.422 19 H 0.456 0.544 20 N -0.357 5.357 21 C 0.084 3.916 22 H 0.263 0.737 23 H 0.358 0.642 24 H 0.124 0.876 25 H 0.151 0.849 26 H 0.166 0.834 27 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.707 -12.962 2.630 17.663 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.178 4.178 3 Si 0.788 3.212 4 H -0.193 1.193 5 H -0.195 1.195 6 H -0.204 1.204 7 C -0.599 4.599 8 H 0.064 0.936 9 C 0.215 3.785 10 H 0.033 0.967 11 O -0.381 6.381 12 C -0.109 4.109 13 C -0.119 4.119 14 C -0.178 4.178 15 C -0.071 4.071 16 C -0.248 4.248 17 C -0.049 4.049 18 N -0.123 5.123 19 H 0.304 0.696 20 N -0.186 5.186 21 C -0.068 4.068 22 H 0.072 0.928 23 H 0.205 0.795 24 H 0.142 0.858 25 H 0.169 0.831 26 H 0.184 0.816 27 H 0.266 0.734 Dipole moment (debyes) X Y Z Total from point charges 10.447 -12.069 3.946 16.443 hybrid contribution 0.655 0.862 -0.245 1.110 sum 11.102 -11.207 3.701 16.204 Atomic orbital electron populations 1.70228 1.07603 1.27384 1.48673 1.25938 0.95601 1.02892 0.93383 0.85453 0.78771 0.78911 0.78094 1.19308 1.19470 1.20358 1.21722 0.92619 0.91904 1.53689 0.93606 1.17908 0.86538 0.89670 0.84407 0.96684 1.86528 1.39003 1.96432 1.16134 1.19968 1.00865 0.98815 0.91253 1.20599 0.97996 0.96787 0.96470 1.20789 0.99185 0.97884 0.99976 1.20580 0.98628 0.99010 0.88861 1.20226 1.06082 1.02463 0.96038 1.23530 0.97143 0.95340 0.88869 1.46447 1.31157 1.23639 1.11090 0.69642 1.77774 1.19645 1.17770 1.03443 1.20973 0.97694 0.96325 0.91843 0.92822 0.79528 0.85794 0.83084 0.81640 0.73420 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -57.31 12.84 21.45 0.28 -57.03 15 2 C 0.02 1.42 5.40 84.65 0.46 1.88 15 3 Si 0.96 46.45 29.54 68.60 2.03 48.47 15 4 H -0.27 -12.62 7.11 99.48 0.71 -11.92 15 5 H -0.27 -12.35 7.11 99.48 0.71 -11.64 15 6 H -0.28 -13.07 7.11 99.48 0.71 -12.36 15 7 C -0.56 -34.15 8.75 25.60 0.22 -33.93 15 8 H 0.05 2.80 7.74 -2.91 -0.02 2.77 15 9 C 0.27 15.89 3.09 29.10 0.09 15.98 15 10 H 0.02 1.03 8.13 -2.39 -0.02 1.01 15 11 O -0.58 -32.68 12.37 -148.98 -1.84 -34.52 15 12 C -0.11 -5.15 5.02 -19.75 -0.10 -5.25 15 13 C -0.10 -3.83 9.21 22.01 0.20 -3.63 15 14 C -0.16 -4.78 9.90 22.02 0.22 -4.56 15 15 C -0.05 -1.36 10.09 22.38 0.23 -1.13 15 16 C -0.24 -7.62 6.33 -20.23 -0.13 -7.75 15 17 C 0.11 2.38 12.08 84.37 1.02 3.40 15 18 N -0.42 -11.51 7.18 -56.34 -0.40 -11.92 15 19 H 0.46 8.12 8.96 -213.42 -1.91 6.20 15 20 N -0.36 -15.67 12.70 -48.70 -0.62 -16.29 15 21 C 0.08 3.79 7.21 42.16 0.30 4.09 15 22 H 0.26 15.59 8.31 -92.70 -0.77 14.81 15 23 H 0.36 17.51 7.30 -74.05 -0.54 16.97 15 24 H 0.12 4.62 6.30 -2.91 -0.02 4.61 15 25 H 0.15 3.32 8.06 -2.91 -0.02 3.29 15 26 H 0.17 2.67 8.06 -2.91 -0.02 2.65 15 27 H 0.25 1.79 8.06 -2.91 -0.02 1.77 15 Total: -1.00 -84.73 243.92 0.71 -84.02 By element: Atomic # 1 Polarization: 19.40 SS G_CDS: -1.23 Total: 18.17 kcal Atomic # 6 Polarization: -33.41 SS G_CDS: 2.51 Total: -30.89 kcal Atomic # 7 Polarization: -84.50 SS G_CDS: -0.75 Total: -85.24 kcal Atomic # 8 Polarization: -32.68 SS G_CDS: -1.84 Total: -34.52 kcal Atomic # 14 Polarization: 46.45 SS G_CDS: 2.03 Total: 48.47 kcal Total: -84.73 0.71 -84.02 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001535652382.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.082 kcal (2) G-P(sol) polarization free energy of solvation -84.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.352 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.714 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.017 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds