Wall clock time and date at job start Mon Mar 30 2020 02:52:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86799 * 119.99854 * 2 1 4 4 H 1.48504 * 109.47486 * 239.99987 * 3 2 1 5 5 H 1.48511 * 109.47230 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47333 * 119.99718 * 3 2 1 7 7 C 1.37873 * 120.00572 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00460 * 180.02562 * 7 2 1 9 9 C 1.50706 * 119.99722 * 359.97438 * 7 2 1 10 10 H 1.09007 * 109.46766 * 60.00442 * 9 7 2 11 11 O 1.42891 * 109.47354 * 300.00293 * 9 7 2 12 12 C 1.50703 * 109.47073 * 179.97438 * 9 7 2 13 13 C 1.35639 * 120.19605 * 94.97963 * 12 9 7 14 14 C 1.39688 * 121.81276 * 180.02562 * 13 12 9 15 15 C 1.35651 * 121.73029 * 0.02562 * 14 13 12 16 16 C 1.41135 * 119.53293 * 359.97438 * 15 14 13 17 17 C 1.38241 * 134.81897 * 180.02562 * 16 15 14 18 18 N 1.33990 * 107.90877 * 180.02562 * 17 16 15 19 19 H 0.97004 * 125.02248 * 179.97438 * 18 17 16 20 20 N 1.39960 * 109.95238 * 359.97438 * 18 17 16 21 21 C 1.32056 * 108.96009 * 359.97438 * 20 18 17 22 22 H 0.96993 * 120.00403 * 0.02562 * 1 2 3 23 23 H 0.96698 * 114.00248 * 299.99918 * 11 9 7 24 24 H 1.08000 * 119.09721 * 0.04875 * 13 12 9 25 25 H 1.08004 * 119.13508 * 180.02562 * 14 13 12 26 26 H 1.07998 * 120.23439 * 180.27834 * 15 14 13 27 27 H 1.08000 * 126.05037 * 359.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6177 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2840 2.7465 -0.0006 6 1 3.1027 1.6965 1.2125 7 6 2.0046 -1.1939 -0.0005 8 1 3.0845 -1.1939 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 1 0.6241 -2.5567 -0.8904 11 8 0.4300 -2.5752 1.1664 12 6 2.2305 -3.6445 -0.0018 13 6 2.5974 -4.2297 1.1656 14 6 3.5027 -5.2929 1.2037 15 6 4.0619 -5.7945 0.0742 16 6 3.7258 -5.2341 -1.1767 17 6 4.0903 -5.4848 -2.4864 18 7 3.4372 -4.6156 -3.2695 19 1 3.5114 -4.5722 -4.2357 20 7 2.6320 -3.7796 -2.4873 21 6 2.7717 -4.1148 -1.2176 22 1 -0.4850 0.8399 -0.0004 23 1 0.9223 -2.5300 1.9974 24 1 2.1778 -3.8639 2.0911 25 1 3.7642 -5.7269 2.1575 26 1 4.7558 -6.6201 0.1314 27 1 4.7803 -6.2460 -2.8195 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001535652383.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:52:45 Heat of formation + Delta-G solvation = 15.205238 kcal Electronic energy + Delta-G solvation = -14132.900712 eV Core-core repulsion = 11663.122336 eV Total energy + Delta-G solvation = -2469.778376 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 218.080 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -42.05517 -38.84328 -36.82060 -34.30883 -33.10049 -31.43112 -30.08212 -28.35482 -25.49477 -23.89024 -22.65671 -20.69559 -19.10713 -18.83189 -17.60123 -17.15672 -16.70646 -15.82128 -15.73408 -15.52010 -14.80399 -14.22947 -14.03326 -13.42816 -13.22133 -12.82343 -12.73340 -12.50757 -12.31000 -12.07609 -11.63302 -11.18254 -10.89107 -10.71921 -10.24405 -9.54204 -8.41147 -8.07045 -6.39973 -0.10526 1.03376 1.35223 1.38955 1.47024 1.65523 2.03373 2.37632 3.06767 3.10414 3.51410 3.87052 4.24237 4.38507 4.40283 4.48434 4.71678 4.80325 4.93970 5.25109 5.44715 5.60731 5.66526 5.79616 6.02986 6.04636 6.20963 6.45232 6.68597 6.79723 7.29198 7.49327 8.90109 Molecular weight = 218.08amu Principal moments of inertia in cm(-1) A = 0.032185 B = 0.009827 C = 0.008662 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 869.749652 B = 2848.562425 C = 3231.657648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.024 3.976 3 Si 0.963 3.037 4 H -0.275 1.275 5 H -0.277 1.277 6 H -0.262 1.262 7 C -0.564 4.564 8 H 0.046 0.954 9 C 0.273 3.727 10 H 0.015 0.985 11 O -0.576 6.576 12 C -0.106 4.106 13 C -0.096 4.096 14 C -0.159 4.159 15 C -0.051 4.051 16 C -0.238 4.238 17 C 0.109 3.891 18 N -0.422 5.422 19 H 0.456 0.544 20 N -0.357 5.357 21 C 0.084 3.916 22 H 0.263 0.737 23 H 0.358 0.642 24 H 0.124 0.876 25 H 0.151 0.849 26 H 0.166 0.834 27 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.730 -12.954 -2.606 17.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.178 4.178 3 Si 0.787 3.213 4 H -0.201 1.201 5 H -0.202 1.202 6 H -0.187 1.187 7 C -0.601 4.601 8 H 0.064 0.936 9 C 0.215 3.785 10 H 0.033 0.967 11 O -0.381 6.381 12 C -0.109 4.109 13 C -0.118 4.118 14 C -0.178 4.178 15 C -0.071 4.071 16 C -0.248 4.248 17 C -0.049 4.049 18 N -0.123 5.123 19 H 0.304 0.696 20 N -0.186 5.186 21 C -0.068 4.068 22 H 0.072 0.928 23 H 0.205 0.795 24 H 0.142 0.858 25 H 0.169 0.831 26 H 0.184 0.816 27 H 0.266 0.734 Dipole moment (debyes) X Y Z Total from point charges 10.464 -12.057 -3.919 16.439 hybrid contribution 0.669 0.857 0.235 1.112 sum 11.132 -11.200 -3.684 16.215 Atomic orbital electron populations 1.70206 1.07611 1.27525 1.48500 1.25932 0.95598 1.02871 0.93360 0.85574 0.78413 0.78324 0.79021 1.20085 1.20246 1.18651 1.21669 0.92627 0.91918 1.53931 0.93576 1.17898 0.86540 0.89650 0.84387 0.96704 1.86525 1.39014 1.96429 1.16132 1.19969 1.00865 0.98821 0.91242 1.20604 0.97986 0.96784 0.96469 1.20790 0.99188 0.97883 0.99971 1.20580 0.98628 0.99002 0.88856 1.20225 1.06057 1.02496 0.96034 1.23529 0.97136 0.95330 0.88882 1.46450 1.31173 1.23633 1.11094 0.69647 1.77776 1.19675 1.17758 1.03435 1.20968 0.97687 0.96325 0.91843 0.92812 0.79534 0.85803 0.83087 0.81638 0.73421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -57.33 12.84 21.44 0.28 -57.05 15 2 C 0.02 1.46 5.40 84.65 0.46 1.92 15 3 Si 0.96 46.38 29.54 68.60 2.03 48.41 15 4 H -0.28 -13.08 7.11 99.48 0.71 -12.38 15 5 H -0.28 -12.86 7.11 99.48 0.71 -12.15 15 6 H -0.26 -11.95 7.11 99.48 0.71 -11.25 15 7 C -0.56 -34.27 8.75 25.60 0.22 -34.04 15 8 H 0.05 2.80 7.74 -2.91 -0.02 2.78 15 9 C 0.27 15.92 3.08 29.10 0.09 16.01 15 10 H 0.02 1.02 8.13 -2.38 -0.02 1.00 15 11 O -0.58 -32.69 12.38 -148.98 -1.84 -34.53 15 12 C -0.11 -5.15 5.02 -19.75 -0.10 -5.25 15 13 C -0.10 -3.82 9.21 22.02 0.20 -3.62 15 14 C -0.16 -4.77 9.90 22.02 0.22 -4.56 15 15 C -0.05 -1.35 10.09 22.38 0.23 -1.13 15 16 C -0.24 -7.62 6.33 -20.23 -0.13 -7.74 15 17 C 0.11 2.38 12.07 84.36 1.02 3.40 15 18 N -0.42 -11.53 7.18 -56.35 -0.40 -11.94 15 19 H 0.46 8.15 8.96 -213.41 -1.91 6.23 15 20 N -0.36 -15.70 12.70 -48.71 -0.62 -16.32 15 21 C 0.08 3.79 7.21 42.16 0.30 4.10 15 22 H 0.26 15.69 8.31 -92.71 -0.77 14.91 15 23 H 0.36 17.52 7.30 -74.06 -0.54 16.98 15 24 H 0.12 4.62 6.30 -2.91 -0.02 4.60 15 25 H 0.15 3.31 8.06 -2.91 -0.02 3.29 15 26 H 0.17 2.67 8.06 -2.91 -0.02 2.64 15 27 H 0.25 1.79 8.06 -2.91 -0.02 1.77 15 Total: -1.00 -84.62 243.93 0.71 -83.91 By element: Atomic # 1 Polarization: 19.67 SS G_CDS: -1.23 Total: 18.44 kcal Atomic # 6 Polarization: -33.42 SS G_CDS: 2.51 Total: -30.91 kcal Atomic # 7 Polarization: -84.56 SS G_CDS: -0.75 Total: -85.31 kcal Atomic # 8 Polarization: -32.69 SS G_CDS: -1.84 Total: -34.53 kcal Atomic # 14 Polarization: 46.38 SS G_CDS: 2.03 Total: 48.41 kcal Total: -84.62 0.71 -83.91 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001535652383.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.112 kcal (2) G-P(sol) polarization free energy of solvation -84.620 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.713 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.907 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds