Wall clock time and date at job start Mon Mar 30 2020 02:39:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86801 * 120.00205 * 2 1 4 4 H 1.48493 * 109.47360 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.46792 * 300.00141 * 3 2 1 6 6 H 1.48504 * 109.47064 * 59.99250 * 3 2 1 7 7 C 1.37880 * 120.00274 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00259 * 180.02562 * 7 2 1 9 9 C 1.50702 * 119.99664 * 359.97438 * 7 2 1 10 10 H 1.09000 * 109.46954 * 60.00142 * 9 7 2 11 11 O 1.42900 * 109.47418 * 299.99865 * 9 7 2 12 12 C 1.50707 * 109.46851 * 180.02562 * 9 7 2 13 13 C 1.38739 * 119.78974 * 85.23922 * 12 9 7 14 14 C 1.37850 * 120.68338 * 180.26123 * 13 12 9 15 15 C 1.38938 * 119.81684 * 359.75904 * 14 13 12 16 16 O 1.34808 * 133.49475 * 179.97438 * 15 14 13 17 17 C 1.34456 * 110.88891 * 180.02562 * 16 15 14 18 18 C 1.33992 * 110.15390 * 359.97438 * 17 16 15 19 19 C 1.40485 * 119.22351 * 0.02562 * 15 14 13 20 20 C 1.36732 * 119.78873 * 264.99638 * 12 9 7 21 21 H 0.96996 * 119.99899 * 0.02562 * 1 2 3 22 22 H 0.96697 * 114.00145 * 300.00972 * 11 9 7 23 23 H 1.08001 * 119.66467 * 0.02562 * 13 12 9 24 24 H 1.08006 * 120.09404 * 179.74178 * 14 13 12 25 25 H 1.08002 * 124.92281 * 179.97438 * 17 16 15 26 26 H 1.07998 * 126.90571 * 179.97438 * 18 17 16 27 27 H 1.08002 * 120.14706 * 0.02562 * 20 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8903 2.3965 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0017 10 1 0.6241 -2.5575 -0.8880 11 8 0.4300 -2.5741 1.1688 12 6 2.2304 -3.6446 0.0027 13 6 2.7543 -4.1025 1.2030 14 6 3.6555 -5.1454 1.2250 15 6 4.0416 -5.7499 0.0351 16 8 4.8809 -6.7623 -0.2617 17 6 4.9190 -6.9803 -1.5879 18 6 4.1070 -6.1223 -2.2204 19 6 3.5041 -5.2846 -1.1766 20 6 2.5932 -4.2292 -1.1789 21 1 -0.4850 0.8400 -0.0004 22 1 0.9223 -2.5281 1.9998 23 1 2.4560 -3.6346 2.1296 24 1 4.0605 -5.4915 2.1645 25 1 5.5173 -7.7373 -2.0731 26 1 3.9324 -6.0589 -3.2842 27 1 2.1800 -3.8715 -2.1104 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001535680433.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:41 Heat of formation + Delta-G solvation = -24.188428 kcal Electronic energy + Delta-G solvation = -13922.583965 eV Core-core repulsion = 11418.804600 eV Total energy + Delta-G solvation = -2503.779365 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 218.073 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -42.01094 -37.98277 -35.12003 -32.41366 -32.17319 -30.36527 -28.79807 -26.55610 -23.39305 -22.48104 -20.93387 -20.45942 -17.07359 -17.02328 -16.58275 -15.71981 -15.45484 -14.64295 -14.04975 -13.72606 -13.28521 -12.76459 -12.47964 -12.28433 -11.98965 -11.82718 -11.21900 -10.96807 -10.82465 -10.46822 -10.18304 -9.83956 -9.27955 -8.69627 -8.40029 -7.86681 -7.69880 -6.06467 -4.25875 1.37663 1.96175 2.70587 3.13233 3.24485 3.33035 3.37591 4.24874 4.41762 4.80258 5.06963 5.19879 5.40030 5.59017 5.63276 5.91754 5.92639 6.12406 6.27389 6.29341 6.65247 6.75447 6.91555 7.04503 7.13978 7.60415 7.69839 7.79960 8.07114 8.77156 9.27145 9.50246 10.96801 Molecular weight = 218.07amu Principal moments of inertia in cm(-1) A = 0.045094 B = 0.007516 C = 0.007199 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 620.770496 B = 3724.608771 C = 3888.552552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.859 5.859 2 C 0.080 3.920 3 Si 0.892 3.108 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.565 4.565 8 H 0.059 0.941 9 C 0.261 3.739 10 H 0.069 0.931 11 O -0.560 6.560 12 C -0.083 4.083 13 C -0.081 4.081 14 C -0.115 4.115 15 C 0.028 3.972 16 O -0.203 6.203 17 C -0.011 4.011 18 C -0.208 4.208 19 C -0.133 4.133 20 C -0.076 4.076 21 H 0.262 0.738 22 H 0.346 0.654 23 H 0.132 0.868 24 H 0.124 0.876 25 H 0.201 0.799 26 H 0.152 0.848 27 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.357 -10.022 -1.231 12.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.494 5.494 2 C -0.127 4.127 3 Si 0.719 3.281 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.602 4.602 8 H 0.077 0.923 9 C 0.203 3.797 10 H 0.086 0.914 11 O -0.363 6.363 12 C -0.083 4.083 13 C -0.099 4.099 14 C -0.134 4.134 15 C -0.018 4.018 16 O -0.105 6.105 17 C -0.076 4.076 18 C -0.228 4.228 19 C -0.134 4.134 20 C -0.094 4.094 21 H 0.071 0.929 22 H 0.190 0.810 23 H 0.150 0.850 24 H 0.142 0.858 25 H 0.217 0.783 26 H 0.170 0.830 27 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 6.846 -10.098 -1.488 12.291 hybrid contribution 0.996 1.014 0.045 1.422 sum 7.843 -9.084 -1.443 12.088 Atomic orbital electron populations 1.70081 1.05944 1.26576 1.46809 1.25051 0.94733 0.99191 0.93692 0.86558 0.80277 0.83508 0.77759 1.19614 1.20796 1.20782 1.21582 0.93302 0.90470 1.54871 0.92285 1.18503 0.86657 0.87856 0.86677 0.91358 1.86621 1.38056 1.96252 1.15344 1.21067 0.98201 0.97050 0.92004 1.20778 0.95349 0.94846 0.98900 1.19822 1.01133 0.98252 0.94155 1.19564 0.95045 0.91218 0.95959 1.83925 1.55590 1.46047 1.24961 1.23763 1.01852 1.01505 0.80447 1.22499 1.01855 0.98820 0.99577 1.19944 1.01347 0.99634 0.92476 1.20121 0.96595 0.93960 0.98759 0.92859 0.80967 0.85007 0.85837 0.78255 0.83002 0.85844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.88 12.84 55.43 0.71 -24.16 15 2 C 0.08 2.19 5.40 -17.82 -0.10 2.09 15 3 Si 0.89 20.94 29.54 -169.99 -5.02 15.91 15 4 H -0.27 -6.32 7.11 56.52 0.40 -5.92 15 5 H -0.28 -6.56 7.11 56.52 0.40 -6.16 15 6 H -0.28 -6.55 7.11 56.52 0.40 -6.15 15 7 C -0.56 -15.28 8.75 -34.44 -0.30 -15.58 15 8 H 0.06 1.60 7.74 -52.49 -0.41 1.20 15 9 C 0.26 6.56 3.06 -29.03 -0.09 6.47 15 10 H 0.07 1.86 8.04 -51.93 -0.42 1.44 15 11 O -0.56 -14.13 12.52 -35.23 -0.44 -14.58 15 12 C -0.08 -1.78 4.91 -104.98 -0.52 -2.30 15 13 C -0.08 -1.53 9.30 -39.54 -0.37 -1.90 15 14 C -0.12 -1.99 10.07 -39.46 -0.40 -2.39 15 15 C 0.03 0.51 7.42 -38.48 -0.29 0.23 15 16 O -0.20 -3.27 10.58 3.89 0.04 -3.23 15 17 C -0.01 -0.14 11.96 29.24 0.35 0.21 15 18 C -0.21 -3.05 11.14 -37.62 -0.42 -3.47 15 19 C -0.13 -2.46 6.40 -105.16 -0.67 -3.13 15 20 C -0.08 -1.53 9.66 -39.69 -0.38 -1.92 15 21 H 0.26 7.15 8.31 -40.82 -0.34 6.81 15 22 H 0.35 7.56 7.35 45.56 0.33 7.90 15 23 H 0.13 2.25 6.57 -52.49 -0.34 1.91 15 24 H 0.12 1.76 8.06 -52.48 -0.42 1.34 15 25 H 0.20 1.56 8.06 -52.49 -0.42 1.13 15 26 H 0.15 1.80 8.06 -52.49 -0.42 1.38 15 27 H 0.12 2.37 8.05 -52.49 -0.42 1.94 15 LS Contribution 245.08 15.07 3.69 3.69 Total: -1.00 -31.38 245.08 -5.85 -37.23 By element: Atomic # 1 Polarization: 8.48 SS G_CDS: -1.66 Total: 6.82 kcal Atomic # 6 Polarization: -18.51 SS G_CDS: -3.18 Total: -21.69 kcal Atomic # 7 Polarization: -24.88 SS G_CDS: 0.71 Total: -24.16 kcal Atomic # 8 Polarization: -17.40 SS G_CDS: -0.40 Total: -17.80 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.91 kcal Total LS contribution 3.69 Total: 3.69 kcal Total: -31.38 -5.85 -37.23 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001535680433.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.041 kcal (2) G-P(sol) polarization free energy of solvation -31.377 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.229 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.188 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds