Wall clock time and date at job start Mon Mar 30 2020 02:39:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86801 * 120.00205 * 2 1 4 4 H 1.48493 * 109.47360 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.46792 * 300.00141 * 3 2 1 6 6 H 1.48504 * 109.47064 * 59.99250 * 3 2 1 7 7 C 1.37880 * 120.00274 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00259 * 180.02562 * 7 2 1 9 9 C 1.50702 * 119.99664 * 359.97438 * 7 2 1 10 10 H 1.09000 * 109.46954 * 60.00142 * 9 7 2 11 11 O 1.42900 * 109.47418 * 299.99865 * 9 7 2 12 12 C 1.50707 * 109.46851 * 180.02562 * 9 7 2 13 13 C 1.38739 * 119.78974 * 85.23922 * 12 9 7 14 14 C 1.37850 * 120.68338 * 180.26123 * 13 12 9 15 15 C 1.38938 * 119.81684 * 359.75904 * 14 13 12 16 16 O 1.34808 * 133.49475 * 179.97438 * 15 14 13 17 17 C 1.34456 * 110.88891 * 180.02562 * 16 15 14 18 18 C 1.33992 * 110.15390 * 359.97438 * 17 16 15 19 19 C 1.40485 * 119.22351 * 0.02562 * 15 14 13 20 20 C 1.36732 * 119.78873 * 264.99638 * 12 9 7 21 21 H 0.96996 * 119.99899 * 0.02562 * 1 2 3 22 22 H 0.96697 * 114.00145 * 300.00972 * 11 9 7 23 23 H 1.08001 * 119.66467 * 0.02562 * 13 12 9 24 24 H 1.08006 * 120.09404 * 179.74178 * 14 13 12 25 25 H 1.08002 * 124.92281 * 179.97438 * 17 16 15 26 26 H 1.07998 * 126.90571 * 179.97438 * 18 17 16 27 27 H 1.08002 * 120.14706 * 0.02562 * 20 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8903 2.3965 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0017 10 1 0.6241 -2.5575 -0.8880 11 8 0.4300 -2.5741 1.1688 12 6 2.2304 -3.6446 0.0027 13 6 2.7543 -4.1025 1.2030 14 6 3.6555 -5.1454 1.2250 15 6 4.0416 -5.7499 0.0351 16 8 4.8809 -6.7623 -0.2617 17 6 4.9190 -6.9803 -1.5879 18 6 4.1070 -6.1223 -2.2204 19 6 3.5041 -5.2846 -1.1766 20 6 2.5932 -4.2292 -1.1789 21 1 -0.4850 0.8400 -0.0004 22 1 0.9223 -2.5281 1.9998 23 1 2.4560 -3.6346 2.1296 24 1 4.0605 -5.4915 2.1645 25 1 5.5173 -7.7373 -2.0731 26 1 3.9324 -6.0589 -3.2842 27 1 2.1800 -3.8715 -2.1104 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001535680433.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:41 Heat of formation + Delta-G solvation = -45.594923 kcal Electronic energy + Delta-G solvation = -13923.512220 eV Core-core repulsion = 11418.804600 eV Total energy + Delta-G solvation = -2504.707620 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 218.073 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -43.27038 -39.55658 -36.93840 -34.32426 -33.62699 -31.96095 -30.11571 -28.48556 -25.18133 -23.88321 -22.16341 -22.05001 -19.11954 -18.36310 -17.90464 -17.10782 -16.97009 -16.70131 -15.70489 -15.11087 -15.02891 -14.20543 -13.93619 -13.82521 -13.51906 -13.45041 -13.14065 -12.83344 -12.62281 -12.07999 -11.89943 -11.23553 -11.08679 -10.77762 -10.36229 -9.32520 -9.09876 -8.15455 -6.43142 0.05704 0.47482 1.39157 1.40926 1.52276 1.53477 1.94295 2.37416 2.83045 3.08848 3.63080 3.81879 4.07208 4.19308 4.32458 4.43411 4.54464 4.61588 4.78440 4.97242 5.28816 5.29206 5.37745 5.56603 5.63405 5.71895 5.93465 6.02098 6.27893 6.67027 7.28622 7.47205 8.87683 Molecular weight = 218.07amu Principal moments of inertia in cm(-1) A = 0.045094 B = 0.007516 C = 0.007199 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 620.770496 B = 3724.608771 C = 3888.552552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.029 3.971 3 Si 0.962 3.038 4 H -0.267 1.267 5 H -0.278 1.278 6 H -0.275 1.275 7 C -0.574 4.574 8 H 0.054 0.946 9 C 0.265 3.735 10 H 0.032 0.968 11 O -0.575 6.575 12 C -0.105 4.105 13 C -0.095 4.095 14 C -0.103 4.103 15 C 0.014 3.986 16 O -0.205 6.205 17 C 0.017 3.983 18 C -0.231 4.231 19 C -0.148 4.148 20 C -0.095 4.095 21 H 0.264 0.736 22 H 0.359 0.641 23 H 0.144 0.856 24 H 0.158 0.842 25 H 0.258 0.742 26 H 0.176 0.824 27 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.622 -11.253 -1.201 14.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.174 4.174 3 Si 0.786 3.214 4 H -0.191 1.191 5 H -0.203 1.203 6 H -0.200 1.200 7 C -0.612 4.612 8 H 0.072 0.928 9 C 0.207 3.793 10 H 0.050 0.950 11 O -0.380 6.380 12 C -0.106 4.106 13 C -0.113 4.113 14 C -0.121 4.121 15 C -0.033 4.033 16 O -0.107 6.107 17 C -0.046 4.046 18 C -0.250 4.250 19 C -0.149 4.149 20 C -0.114 4.114 21 H 0.073 0.927 22 H 0.205 0.795 23 H 0.162 0.838 24 H 0.175 0.825 25 H 0.274 0.726 26 H 0.194 0.806 27 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 9.124 -11.340 -1.454 14.628 hybrid contribution 0.352 1.238 -0.015 1.287 sum 9.476 -10.103 -1.469 13.929 Atomic orbital electron populations 1.70204 1.07567 1.27583 1.48089 1.25884 0.95507 1.02773 0.93194 0.85472 0.78927 0.79009 0.77955 1.19138 1.20310 1.20048 1.21834 0.93130 0.91729 1.54480 0.92784 1.18183 0.86579 0.89155 0.85353 0.95041 1.86541 1.38909 1.96392 1.16127 1.20744 0.98905 0.97049 0.93885 1.20870 0.96223 0.95906 0.98285 1.20108 0.99615 0.96832 0.95548 1.19800 0.95524 0.91898 0.96062 1.83962 1.54850 1.45113 1.26789 1.24848 1.00137 1.00802 0.78857 1.22847 1.02737 0.99037 1.00399 1.20301 1.00766 0.99263 0.94598 1.20134 0.97846 0.95239 0.98157 0.92698 0.79454 0.83807 0.82456 0.72636 0.80624 0.86493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -53.33 12.84 21.45 0.28 -53.06 15 2 C 0.03 1.63 5.40 84.66 0.46 2.09 15 3 Si 0.96 43.42 29.54 68.60 2.03 45.44 15 4 H -0.27 -11.74 7.11 99.48 0.71 -11.03 15 5 H -0.28 -12.24 7.11 99.48 0.71 -11.53 15 6 H -0.28 -12.04 7.11 99.48 0.71 -11.33 15 7 C -0.57 -31.94 8.75 25.60 0.22 -31.71 15 8 H 0.05 2.99 7.74 -2.91 -0.02 2.97 15 9 C 0.26 13.95 3.06 29.10 0.09 14.04 15 10 H 0.03 1.85 8.04 -2.39 -0.02 1.84 15 11 O -0.57 -30.09 12.52 -148.98 -1.87 -31.95 15 12 C -0.11 -4.68 4.91 -20.10 -0.10 -4.78 15 13 C -0.09 -3.58 9.30 22.30 0.21 -3.38 15 14 C -0.10 -3.38 10.07 22.35 0.23 -3.16 15 15 C 0.01 0.47 7.42 22.99 0.17 0.64 15 16 O -0.21 -5.86 10.58 -8.99 -0.10 -5.96 15 17 C 0.02 0.37 11.96 66.85 0.80 1.17 15 18 C -0.23 -6.15 11.14 23.54 0.26 -5.89 15 19 C -0.15 -5.35 6.40 -20.21 -0.13 -5.48 15 20 C -0.10 -3.97 9.66 22.20 0.21 -3.75 15 21 H 0.26 14.72 8.31 -92.71 -0.77 13.95 15 22 H 0.36 16.14 7.35 -74.06 -0.54 15.59 15 23 H 0.14 4.89 6.57 -2.91 -0.02 4.87 15 24 H 0.16 4.00 8.06 -2.91 -0.02 3.97 15 25 H 0.26 2.30 8.06 -2.91 -0.02 2.28 15 26 H 0.18 3.67 8.06 -2.91 -0.02 3.65 15 27 H 0.12 4.78 8.05 -2.91 -0.02 4.76 15 Total: -1.00 -69.17 245.08 3.41 -65.75 By element: Atomic # 1 Polarization: 19.33 SS G_CDS: 0.65 Total: 19.99 kcal Atomic # 6 Polarization: -42.63 SS G_CDS: 2.42 Total: -40.21 kcal Atomic # 7 Polarization: -53.33 SS G_CDS: 0.28 Total: -53.06 kcal Atomic # 8 Polarization: -35.95 SS G_CDS: -1.96 Total: -37.91 kcal Atomic # 14 Polarization: 43.42 SS G_CDS: 2.03 Total: 45.44 kcal Total: -69.17 3.41 -65.75 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001535680433.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.157 kcal (2) G-P(sol) polarization free energy of solvation -69.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.008 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.752 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds