Wall clock time and date at job start Mon Mar 30 2020 02:59:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 120.00112 * 2 1 4 4 H 1.48500 * 109.46986 * 270.00107 * 3 2 1 5 5 H 1.48496 * 109.47029 * 30.00124 * 3 2 1 6 6 H 1.48499 * 109.47352 * 149.99954 * 3 2 1 7 7 C 1.37885 * 120.00035 * 179.97438 * 2 1 3 8 8 H 1.07991 * 119.99806 * 0.02562 * 7 2 1 9 9 C 1.50697 * 119.99686 * 179.72339 * 7 2 1 10 10 H 1.09001 * 109.47048 * 60.00389 * 9 7 2 11 11 O 1.42895 * 109.47477 * 300.00091 * 9 7 2 12 12 C 1.50698 * 109.46993 * 179.97438 * 9 7 2 13 13 C 1.38550 * 126.21510 * 94.69017 * 12 9 7 14 14 N 1.31490 * 109.00624 * 179.88378 * 13 12 9 15 15 N 1.40043 * 108.91376 * 0.38269 * 14 13 12 16 16 C 1.36542 * 132.43037 * 179.76043 * 15 14 13 17 17 C 1.34934 * 120.65653 * 179.97438 * 16 15 14 18 18 C 1.40472 * 120.43372 * 0.02562 * 17 16 15 19 19 C 1.36062 * 119.58770 * 359.97438 * 18 17 16 20 20 C 1.37129 * 107.44633 * 359.76004 * 15 14 13 21 21 H 0.97000 * 119.99706 * 359.97438 * 1 2 3 22 22 H 0.96701 * 113.99795 * 300.00251 * 11 9 7 23 23 H 1.07996 * 125.49515 * 0.02562 * 13 12 9 24 24 H 1.07999 * 119.66761 * 359.97438 * 16 15 14 25 25 H 1.07996 * 119.77956 * 180.02562 * 17 16 15 26 26 H 1.07995 * 120.20297 * 180.02562 * 18 17 16 27 27 H 1.08003 * 120.38753 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1941 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5115 -1.1940 -0.0058 10 1 3.8785 -0.6777 0.8813 11 8 3.9830 -0.5237 -1.1764 12 6 4.0139 -2.6148 -0.0032 13 6 4.3683 -3.3598 -1.1163 14 7 4.7611 -4.5524 -0.7261 15 7 4.6662 -4.6276 0.6691 16 6 4.9414 -5.6263 1.5587 17 6 4.7602 -5.4377 2.8825 18 6 4.2839 -4.2084 3.3675 19 6 4.0052 -3.2038 2.4932 20 6 4.2001 -3.4176 1.1153 21 1 -0.4850 0.8401 0.0004 22 1 3.6942 -0.9296 -2.0052 23 1 4.3305 -3.0155 -2.1392 24 1 5.3078 -6.5765 1.1992 25 1 4.9828 -6.2372 3.5736 26 1 4.1406 -4.0614 4.4277 27 1 3.6380 -2.2536 2.8520 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001535701024.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:59:39 Heat of formation + Delta-G solvation = 57.574313 kcal Electronic energy + Delta-G solvation = -14172.222563 eV Core-core repulsion = 11704.281448 eV Total energy + Delta-G solvation = -2467.941116 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 218.080 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -41.49867 -37.08598 -35.78452 -32.48523 -32.25055 -30.27421 -28.96482 -26.46604 -23.39560 -22.77492 -21.96669 -19.80137 -17.44312 -16.68273 -16.39474 -15.59926 -15.05990 -14.90383 -14.37680 -14.32901 -13.40138 -12.88320 -12.66868 -12.03134 -11.76621 -11.53581 -11.44162 -11.06232 -10.81269 -10.47135 -9.99845 -9.77201 -9.27035 -8.90918 -8.68447 -8.66118 -6.88689 -6.12823 -4.24541 1.14563 1.49771 2.71150 3.24997 3.44088 3.48076 3.60255 3.81372 4.48793 4.60460 4.99610 5.06572 5.14372 5.21371 5.46602 5.74386 5.87328 5.93239 6.06782 6.21586 6.39470 6.55659 6.78516 7.06310 7.32150 7.33324 7.53980 8.03395 8.30518 8.81959 8.98938 9.49513 10.97397 Molecular weight = 218.08amu Principal moments of inertia in cm(-1) A = 0.039085 B = 0.009512 C = 0.008583 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 716.222082 B = 2942.796682 C = 3261.575981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.082 3.918 3 Si 0.911 3.089 4 H -0.277 1.277 5 H -0.305 1.305 6 H -0.267 1.267 7 C -0.550 4.550 8 H 0.073 0.927 9 C 0.262 3.738 10 H 0.067 0.933 11 O -0.581 6.581 12 C -0.211 4.211 13 C 0.075 3.925 14 N -0.331 5.331 15 N -0.282 5.282 16 C 0.100 3.900 17 C -0.168 4.168 18 C -0.113 4.113 19 C -0.082 4.082 20 C 0.089 3.911 21 H 0.265 0.735 22 H 0.361 0.639 23 H 0.187 0.813 24 H 0.159 0.841 25 H 0.146 0.854 26 H 0.134 0.866 27 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.075 -7.793 4.812 12.893 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.123 4.123 3 Si 0.741 3.259 4 H -0.203 1.203 5 H -0.233 1.233 6 H -0.192 1.192 7 C -0.588 4.588 8 H 0.091 0.909 9 C 0.204 3.796 10 H 0.084 0.916 11 O -0.387 6.387 12 C -0.222 4.222 13 C -0.100 4.100 14 N -0.156 5.156 15 N -0.051 5.051 16 C -0.024 4.024 17 C -0.191 4.191 18 C -0.136 4.136 19 C -0.101 4.101 20 C -0.028 4.028 21 H 0.075 0.925 22 H 0.208 0.792 23 H 0.204 0.796 24 H 0.176 0.824 25 H 0.163 0.837 26 H 0.152 0.848 27 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 9.650 -8.440 4.709 13.658 hybrid contribution -0.375 1.067 -0.148 1.141 sum 9.275 -7.373 4.562 12.696 Atomic orbital electron populations 1.69956 1.06634 1.27448 1.48843 1.25038 0.94681 0.99810 0.92721 0.86289 0.79208 0.81756 0.78695 1.20299 1.23282 1.19230 1.21488 0.89157 0.94746 1.53378 0.90905 1.18256 0.93230 0.82532 0.85560 0.91575 1.86401 1.77751 1.57858 1.16726 1.21208 1.10360 1.00895 0.89759 1.23484 0.96136 0.90203 1.00143 1.77704 1.31300 1.21605 0.84984 1.46133 1.42718 1.09936 1.06273 1.21281 1.00439 0.92452 0.88264 1.20677 1.05528 0.99415 0.93459 1.20994 0.99588 0.92807 1.00186 1.20735 0.99056 1.00936 0.89418 1.19279 1.01839 0.86885 0.94838 0.92492 0.79169 0.79645 0.82409 0.83664 0.84798 0.83448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.87 13.96 55.43 0.77 -26.10 15 2 C 0.08 2.33 5.47 -17.82 -0.10 2.23 15 3 Si 0.91 22.74 26.19 -169.99 -4.45 18.29 15 4 H -0.28 -6.91 7.11 56.52 0.40 -6.51 15 5 H -0.30 -7.55 7.11 56.52 0.40 -7.15 15 6 H -0.27 -6.57 6.54 56.52 0.37 -6.20 15 7 C -0.55 -15.22 9.33 -34.44 -0.32 -15.54 15 8 H 0.07 2.24 7.98 -52.49 -0.42 1.82 15 9 C 0.26 6.25 2.77 -29.04 -0.08 6.17 15 10 H 0.07 1.61 7.19 -51.93 -0.37 1.24 15 11 O -0.58 -13.15 10.85 -35.23 -0.38 -13.53 15 12 C -0.21 -4.56 5.24 -104.25 -0.55 -5.11 15 13 C 0.08 1.48 11.26 -17.58 -0.20 1.28 15 14 N -0.33 -6.50 12.66 30.46 0.39 -6.12 15 15 N -0.28 -5.22 3.90 -10.71 -0.04 -5.26 15 16 C 0.10 1.41 11.19 -16.63 -0.19 1.23 15 17 C -0.17 -2.00 9.98 -39.91 -0.40 -2.40 15 18 C -0.11 -1.49 10.07 -39.52 -0.40 -1.89 15 19 C -0.08 -1.39 10.08 -39.40 -0.40 -1.79 15 20 C 0.09 1.78 6.76 -84.27 -0.57 1.21 15 21 H 0.27 7.50 8.31 -40.82 -0.34 7.16 15 22 H 0.36 7.03 8.13 45.56 0.37 7.40 15 23 H 0.19 3.03 7.48 -52.49 -0.39 2.64 15 24 H 0.16 1.70 8.06 -52.49 -0.42 1.28 15 25 H 0.15 1.14 8.06 -52.49 -0.42 0.72 15 26 H 0.13 1.33 8.06 -52.49 -0.42 0.91 15 27 H 0.15 2.43 8.06 -52.48 -0.42 2.01 15 LS Contribution 241.79 15.07 3.64 3.64 Total: -1.00 -33.43 241.79 -4.94 -38.37 By element: Atomic # 1 Polarization: 6.99 SS G_CDS: -1.67 Total: 5.32 kcal Atomic # 6 Polarization: -11.42 SS G_CDS: -3.19 Total: -14.61 kcal Atomic # 7 Polarization: -38.59 SS G_CDS: 1.12 Total: -37.48 kcal Atomic # 8 Polarization: -13.15 SS G_CDS: -0.38 Total: -13.53 kcal Atomic # 14 Polarization: 22.74 SS G_CDS: -4.45 Total: 18.29 kcal Total LS contribution 3.64 Total: 3.64 kcal Total: -33.43 -4.94 -38.37 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001535701024.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.939 kcal (2) G-P(sol) polarization free energy of solvation -33.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.938 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.365 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds