Wall clock time and date at job start Mon Mar 30 2020 02:54:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 119.99579 * 2 1 4 4 H 1.48494 * 109.47225 * 0.02562 * 3 2 1 5 5 H 1.48506 * 109.46866 * 120.00450 * 3 2 1 6 6 H 1.48498 * 109.47306 * 239.99734 * 3 2 1 7 7 C 1.37871 * 120.00481 * 179.73118 * 2 1 3 8 8 H 1.08002 * 120.00484 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00075 * 359.97438 * 7 2 1 10 10 H 1.09009 * 109.46564 * 300.00329 * 9 7 2 11 11 O 1.42897 * 109.47273 * 59.99538 * 9 7 2 12 12 C 1.50698 * 109.47465 * 180.02562 * 9 7 2 13 13 N 1.30241 * 126.10622 * 285.02490 * 12 9 7 14 14 N 1.39875 * 110.08483 * 180.02562 * 13 12 9 15 15 H 0.96997 * 125.45968 * 180.02562 * 14 13 12 16 16 C 1.37039 * 109.07776 * 359.97438 * 14 13 12 17 17 C 1.39282 * 133.85044 * 180.02562 * 16 14 13 18 18 C 1.36591 * 119.85143 * 179.97438 * 17 16 14 19 19 C 1.38970 * 120.81588 * 359.97438 * 18 17 16 20 20 C 1.36464 * 120.62665 * 0.03062 * 19 18 17 21 21 C 1.39946 * 119.63360 * 359.64820 * 20 19 18 22 22 H 0.97005 * 119.99656 * 179.97438 * 1 2 3 23 23 H 0.96706 * 113.99647 * 60.00592 * 11 9 7 24 24 H 1.08000 * 120.08043 * 359.97438 * 17 16 14 25 25 H 1.07997 * 119.59335 * 179.97438 * 18 17 16 26 26 H 1.07997 * 119.68555 * 179.97438 * 19 18 17 27 27 H 1.07999 * 120.18200 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 1.2840 2.7465 0.0006 5 1 3.1029 1.6965 1.2125 6 1 3.1028 1.6966 -1.2124 7 6 2.0046 -1.1939 0.0056 8 1 3.0846 -1.1939 0.0052 9 6 1.2512 -2.4991 0.0123 10 1 0.6248 -2.5524 0.9029 11 8 0.4291 -2.5806 -1.1537 12 6 2.2305 -3.6445 0.0182 13 7 2.9366 -4.0558 -0.9960 14 7 3.7338 -5.1411 -0.6177 15 1 4.3462 -5.6189 -1.1986 16 6 3.5118 -5.4202 0.7055 17 6 4.0178 -6.3704 1.5893 18 6 3.5856 -6.3921 2.8848 19 6 2.6441 -5.4753 3.3367 20 6 2.1307 -4.5331 2.4934 21 6 2.5627 -4.4861 1.1631 22 1 -0.4850 -0.8401 -0.0004 23 1 0.9210 -2.5393 -1.9853 24 1 4.7503 -7.0884 1.2511 25 1 3.9804 -7.1309 3.5664 26 1 2.3149 -5.5093 4.3647 27 1 1.3990 -3.8244 2.8521 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001535822967.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:19 Heat of formation + Delta-G solvation = 23.455819 kcal Electronic energy + Delta-G solvation = -14053.461473 eV Core-core repulsion = 11584.040869 eV Total energy + Delta-G solvation = -2469.420604 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 218.080 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -40.78884 -36.94325 -35.86870 -32.19236 -32.01007 -29.50945 -29.17109 -26.65086 -23.23785 -22.61516 -21.75231 -19.51629 -17.56855 -17.33860 -16.39704 -15.31757 -14.90680 -14.33715 -13.96973 -13.75319 -13.65868 -12.97591 -12.77351 -12.14345 -11.71706 -11.51121 -10.90371 -10.79208 -10.30148 -10.28889 -10.13248 -9.87810 -9.52209 -8.52984 -8.35995 -8.22048 -7.56551 -6.40745 -4.25335 1.30212 1.81515 3.05809 3.16451 3.43165 3.44441 3.63572 4.11404 4.49658 4.90648 5.06062 5.17981 5.22264 5.35398 5.53070 5.66375 5.97223 6.01570 6.17220 6.23761 6.59966 6.78409 6.93228 7.09264 7.25432 7.72715 7.82536 8.21711 8.31291 8.79088 8.98036 9.57603 10.98607 Molecular weight = 218.08amu Principal moments of inertia in cm(-1) A = 0.037378 B = 0.008536 C = 0.008111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 748.921589 B = 3279.454544 C = 3451.411137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.038 3.962 3 Si 1.070 2.930 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.287 1.287 7 C -0.637 4.637 8 H 0.052 0.948 9 C 0.285 3.715 10 H 0.073 0.927 11 O -0.574 6.574 12 C 0.123 3.877 13 N -0.259 5.259 14 N -0.525 5.525 15 H 0.432 0.568 16 C 0.125 3.875 17 C -0.153 4.153 18 C -0.075 4.075 19 C -0.174 4.174 20 C -0.027 4.027 21 C -0.170 4.170 22 H 0.284 0.716 23 H 0.363 0.637 24 H 0.119 0.881 25 H 0.123 0.877 26 H 0.122 0.878 27 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.558 -10.548 4.178 13.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.171 4.171 3 Si 0.897 3.103 4 H -0.206 1.206 5 H -0.213 1.213 6 H -0.213 1.213 7 C -0.676 4.676 8 H 0.070 0.930 9 C 0.225 3.775 10 H 0.091 0.909 11 O -0.378 6.378 12 C -0.056 4.056 13 N -0.073 5.073 14 N -0.237 5.237 15 H 0.275 0.725 16 C 0.008 3.992 17 C -0.176 4.176 18 C -0.096 4.096 19 C -0.194 4.194 20 C -0.048 4.048 21 C -0.178 4.178 22 H 0.096 0.904 23 H 0.209 0.791 24 H 0.137 0.863 25 H 0.141 0.859 26 H 0.140 0.860 27 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 6.138 -8.782 3.351 11.227 hybrid contribution 1.124 -2.174 0.138 2.451 sum 7.263 -10.956 3.490 13.600 Atomic orbital electron populations 1.70656 1.06829 1.32271 1.42475 1.25820 0.96418 1.02351 0.92494 0.83552 0.74917 0.75124 0.76675 1.20594 1.21334 1.21339 1.22247 0.94526 0.91143 1.59644 0.92993 1.18251 0.85596 0.86934 0.86675 0.90909 1.86475 1.38745 1.96212 1.16372 1.25325 0.96109 0.95902 0.88231 1.76583 1.06597 1.00510 1.23575 1.46021 1.40472 1.29914 1.07290 0.72504 1.18906 0.97224 0.96757 0.86335 1.19709 1.04391 1.00199 0.93254 1.20611 0.96335 0.98078 0.94560 1.20575 1.00923 0.97999 0.99919 1.20478 0.97011 0.96442 0.90832 1.19987 1.02740 0.99262 0.95829 0.90392 0.79068 0.86327 0.85923 0.85973 0.85361 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.48 13.53 55.43 0.75 -25.73 15 2 C 0.04 1.08 5.40 -17.82 -0.10 0.99 15 3 Si 1.07 24.91 29.90 -169.99 -5.08 19.82 15 4 H -0.28 -6.50 7.11 56.52 0.40 -6.10 15 5 H -0.29 -6.40 7.11 56.52 0.40 -6.00 15 6 H -0.29 -6.46 7.11 56.52 0.40 -6.06 15 7 C -0.64 -17.84 8.75 -34.44 -0.30 -18.14 15 8 H 0.05 1.49 7.74 -52.49 -0.41 1.09 15 9 C 0.28 7.34 2.95 -29.03 -0.09 7.25 15 10 H 0.07 1.92 8.01 -51.92 -0.42 1.50 15 11 O -0.57 -14.85 12.00 -35.23 -0.42 -15.27 15 12 C 0.12 2.86 6.24 -80.19 -0.50 2.36 15 13 N -0.26 -5.69 12.46 34.84 0.43 -5.26 15 14 N -0.52 -9.35 7.37 32.36 0.24 -9.11 15 15 H 0.43 5.92 8.96 -182.77 -1.64 4.28 15 16 C 0.12 2.22 7.34 -84.18 -0.62 1.61 15 17 C -0.15 -2.17 10.03 -39.79 -0.40 -2.57 15 18 C -0.08 -0.98 9.96 -39.90 -0.40 -1.37 15 19 C -0.17 -2.48 9.97 -39.95 -0.40 -2.88 15 20 C -0.03 -0.48 10.07 -39.58 -0.40 -0.88 15 21 C -0.17 -3.47 6.33 -105.20 -0.67 -4.13 15 22 H 0.28 8.57 6.47 -40.82 -0.26 8.31 15 23 H 0.36 8.76 8.95 45.56 0.41 9.17 15 24 H 0.12 1.31 8.06 -52.49 -0.42 0.89 15 25 H 0.12 1.16 8.06 -52.49 -0.42 0.74 15 26 H 0.12 1.38 8.06 -52.49 -0.42 0.96 15 27 H 0.13 2.15 8.06 -52.49 -0.42 1.73 15 LS Contribution 245.97 15.07 3.71 3.71 Total: -1.00 -32.06 245.97 -7.04 -39.10 By element: Atomic # 1 Polarization: 13.30 SS G_CDS: -2.80 Total: 10.50 kcal Atomic # 6 Polarization: -13.90 SS G_CDS: -3.86 Total: -17.76 kcal Atomic # 7 Polarization: -41.52 SS G_CDS: 1.42 Total: -40.10 kcal Atomic # 8 Polarization: -14.85 SS G_CDS: -0.42 Total: -15.27 kcal Atomic # 14 Polarization: 24.91 SS G_CDS: -5.08 Total: 19.82 kcal Total LS contribution 3.71 Total: 3.71 kcal Total: -32.06 -7.04 -39.10 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001535822967.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.556 kcal (2) G-P(sol) polarization free energy of solvation -32.060 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.100 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds