Wall clock time and date at job start Mon Mar 30 2020 02:54:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 119.99579 * 2 1 4 4 H 1.48494 * 109.47225 * 0.02562 * 3 2 1 5 5 H 1.48506 * 109.46866 * 120.00450 * 3 2 1 6 6 H 1.48498 * 109.47306 * 239.99734 * 3 2 1 7 7 C 1.37871 * 120.00481 * 179.73118 * 2 1 3 8 8 H 1.08002 * 120.00484 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00075 * 359.97438 * 7 2 1 10 10 H 1.09009 * 109.46564 * 300.00329 * 9 7 2 11 11 O 1.42897 * 109.47273 * 59.99538 * 9 7 2 12 12 C 1.50698 * 109.47465 * 180.02562 * 9 7 2 13 13 N 1.30241 * 126.10622 * 285.02490 * 12 9 7 14 14 N 1.39875 * 110.08483 * 180.02562 * 13 12 9 15 15 H 0.96997 * 125.45968 * 180.02562 * 14 13 12 16 16 C 1.37039 * 109.07776 * 359.97438 * 14 13 12 17 17 C 1.39282 * 133.85044 * 180.02562 * 16 14 13 18 18 C 1.36591 * 119.85143 * 179.97438 * 17 16 14 19 19 C 1.38970 * 120.81588 * 359.97438 * 18 17 16 20 20 C 1.36464 * 120.62665 * 0.03062 * 19 18 17 21 21 C 1.39946 * 119.63360 * 359.64820 * 20 19 18 22 22 H 0.97005 * 119.99656 * 179.97438 * 1 2 3 23 23 H 0.96706 * 113.99647 * 60.00592 * 11 9 7 24 24 H 1.08000 * 120.08043 * 359.97438 * 17 16 14 25 25 H 1.07997 * 119.59335 * 179.97438 * 18 17 16 26 26 H 1.07997 * 119.68555 * 179.97438 * 19 18 17 27 27 H 1.07999 * 120.18200 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 1.2840 2.7465 0.0006 5 1 3.1029 1.6965 1.2125 6 1 3.1028 1.6966 -1.2124 7 6 2.0046 -1.1939 0.0056 8 1 3.0846 -1.1939 0.0052 9 6 1.2512 -2.4991 0.0123 10 1 0.6248 -2.5524 0.9029 11 8 0.4291 -2.5806 -1.1537 12 6 2.2305 -3.6445 0.0182 13 7 2.9366 -4.0558 -0.9960 14 7 3.7338 -5.1411 -0.6177 15 1 4.3462 -5.6189 -1.1986 16 6 3.5118 -5.4202 0.7055 17 6 4.0178 -6.3704 1.5893 18 6 3.5856 -6.3921 2.8848 19 6 2.6441 -5.4753 3.3367 20 6 2.1307 -4.5331 2.4934 21 6 2.5627 -4.4861 1.1631 22 1 -0.4850 -0.8401 -0.0004 23 1 0.9210 -2.5393 -1.9853 24 1 4.7503 -7.0884 1.2511 25 1 3.9804 -7.1309 3.5664 26 1 2.3149 -5.5093 4.3647 27 1 1.3990 -3.8244 2.8521 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001535822967.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:19 Heat of formation + Delta-G solvation = -0.633875 kcal Electronic energy + Delta-G solvation = -14054.506081 eV Core-core repulsion = 11584.040869 eV Total energy + Delta-G solvation = -2470.465212 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 218.080 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -42.20740 -38.43340 -37.67456 -34.36902 -33.48390 -30.85644 -30.54183 -28.61621 -25.27374 -23.90783 -23.04389 -21.22644 -19.47000 -18.92055 -17.74160 -17.18308 -16.12978 -15.83728 -15.75634 -15.47189 -14.99769 -14.82726 -14.43862 -14.21081 -12.84826 -12.80983 -12.64677 -12.44441 -12.12473 -11.93291 -11.90258 -11.62655 -11.13030 -10.67516 -10.31200 -9.64245 -8.94241 -8.64359 -6.52652 0.00474 0.57444 1.46645 1.54825 1.60940 1.80352 1.82458 2.54430 2.86252 3.10691 3.57634 3.65150 3.82819 3.94127 4.16080 4.39553 4.49490 4.65010 4.88160 5.00342 5.21593 5.36613 5.53759 5.60676 5.69770 5.97638 6.03042 6.46147 6.49882 6.66875 6.95494 7.39071 8.70794 Molecular weight = 218.08amu Principal moments of inertia in cm(-1) A = 0.037378 B = 0.008536 C = 0.008111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 748.921589 B = 3279.454544 C = 3451.411137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C -0.007 4.007 3 Si 1.117 2.883 4 H -0.278 1.278 5 H -0.270 1.270 6 H -0.274 1.274 7 C -0.644 4.644 8 H 0.039 0.961 9 C 0.287 3.713 10 H 0.054 0.946 11 O -0.583 6.583 12 C 0.089 3.911 13 N -0.280 5.280 14 N -0.511 5.511 15 H 0.449 0.551 16 C 0.114 3.886 17 C -0.145 4.145 18 C -0.063 4.063 19 C -0.157 4.157 20 C -0.061 4.061 21 C -0.208 4.208 22 H 0.270 0.730 23 H 0.368 0.632 24 H 0.159 0.841 25 H 0.173 0.827 26 H 0.156 0.844 27 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.697 -12.276 5.604 16.055 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.210 4.210 3 Si 0.938 3.062 4 H -0.203 1.203 5 H -0.195 1.195 6 H -0.199 1.199 7 C -0.682 4.682 8 H 0.058 0.942 9 C 0.228 3.772 10 H 0.072 0.928 11 O -0.388 6.388 12 C -0.089 4.089 13 N -0.095 5.095 14 N -0.227 5.227 15 H 0.296 0.704 16 C -0.003 4.003 17 C -0.167 4.167 18 C -0.083 4.083 19 C -0.176 4.176 20 C -0.082 4.082 21 C -0.216 4.216 22 H 0.080 0.920 23 H 0.214 0.786 24 H 0.177 0.823 25 H 0.191 0.809 26 H 0.174 0.826 27 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 8.288 -10.542 4.779 14.236 hybrid contribution 0.514 -1.824 -0.230 1.908 sum 8.802 -12.365 4.549 15.845 Atomic orbital electron populations 1.70783 1.07713 1.31344 1.44748 1.27290 0.96447 1.05996 0.91309 0.82949 0.74163 0.71240 0.77832 1.20281 1.19522 1.19928 1.22452 0.93984 0.92603 1.59196 0.94242 1.17925 0.85761 0.87818 0.85720 0.92831 1.86419 1.39240 1.96371 1.16750 1.24815 0.96998 0.96628 0.90457 1.76379 1.07166 1.02013 1.23948 1.45891 1.39971 1.28848 1.08007 0.70440 1.19309 0.97231 0.97394 0.86346 1.20260 1.04205 0.99292 0.92976 1.21223 0.94558 0.97779 0.94722 1.21043 0.99618 0.96167 1.00786 1.20627 0.98449 0.98373 0.90716 1.20199 1.04773 1.00190 0.96431 0.91974 0.78581 0.82346 0.80929 0.82620 0.86466 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.02 13.53 21.45 0.29 -55.73 15 2 C -0.01 -0.43 5.40 84.65 0.46 0.03 15 3 Si 1.12 50.48 29.90 68.60 2.05 52.54 15 4 H -0.28 -12.35 7.11 99.48 0.71 -11.64 15 5 H -0.27 -11.38 7.11 99.48 0.71 -10.67 15 6 H -0.27 -11.71 7.11 99.48 0.71 -11.01 15 7 C -0.64 -37.43 8.75 25.60 0.22 -37.20 15 8 H 0.04 2.34 7.74 -2.91 -0.02 2.31 15 9 C 0.29 15.62 2.95 29.10 0.09 15.71 15 10 H 0.05 3.06 8.01 -2.38 -0.02 3.04 15 11 O -0.58 -31.82 12.00 -148.98 -1.79 -33.61 15 12 C 0.09 4.30 6.24 44.79 0.28 4.58 15 13 N -0.28 -12.58 12.46 -43.69 -0.54 -13.12 15 14 N -0.51 -17.80 7.37 -51.54 -0.38 -18.18 15 15 H 0.45 11.59 8.96 -213.47 -1.91 9.68 15 16 C 0.11 3.87 7.34 39.21 0.29 4.16 15 17 C -0.15 -3.48 10.03 22.14 0.22 -3.26 15 18 C -0.06 -1.29 9.96 22.06 0.22 -1.07 15 19 C -0.16 -3.93 9.97 22.03 0.22 -3.71 15 20 C -0.06 -2.14 10.07 22.27 0.22 -1.91 15 21 C -0.21 -8.58 6.33 -20.24 -0.13 -8.71 15 22 H 0.27 17.04 6.47 -92.70 -0.60 16.44 15 23 H 0.37 18.73 8.95 -74.05 -0.66 18.07 15 24 H 0.16 2.54 8.06 -2.91 -0.02 2.52 15 25 H 0.17 1.95 8.06 -2.91 -0.02 1.92 15 26 H 0.16 2.81 8.06 -2.91 -0.02 2.79 15 27 H 0.12 4.17 8.06 -2.91 -0.02 4.14 15 Total: -1.00 -72.42 245.97 0.53 -71.89 By element: Atomic # 1 Polarization: 28.79 SS G_CDS: -1.19 Total: 27.60 kcal Atomic # 6 Polarization: -33.48 SS G_CDS: 2.09 Total: -31.39 kcal Atomic # 7 Polarization: -86.39 SS G_CDS: -0.63 Total: -87.02 kcal Atomic # 8 Polarization: -31.82 SS G_CDS: -1.79 Total: -33.61 kcal Atomic # 14 Polarization: 50.48 SS G_CDS: 2.05 Total: 52.54 kcal Total: -72.42 0.53 -71.89 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001535822967.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.253 kcal (2) G-P(sol) polarization free energy of solvation -72.417 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.164 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.887 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds