Wall clock time and date at job start Mon Mar 30 2020 02:54:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86803 * 119.99619 * 2 1 4 4 H 1.48507 * 109.47138 * 269.99735 * 3 2 1 5 5 H 1.48490 * 109.47729 * 30.00014 * 3 2 1 6 6 H 1.48504 * 109.47078 * 150.00117 * 3 2 1 7 7 C 1.37872 * 120.00262 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00414 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99631 * 0.02562 * 7 2 1 10 10 H 1.09000 * 109.47427 * 59.99742 * 9 7 2 11 11 O 1.42898 * 109.47168 * 299.99589 * 9 7 2 12 12 C 1.50705 * 109.46746 * 179.97438 * 9 7 2 13 13 N 1.30245 * 126.10838 * 75.02366 * 12 9 7 14 14 N 1.39872 * 110.08700 * 179.97438 * 13 12 9 15 15 H 0.97001 * 125.45893 * 179.97438 * 14 13 12 16 16 C 1.37034 * 109.07457 * 0.27056 * 14 13 12 17 17 C 1.39295 * 133.84063 * 180.45772 * 16 14 13 18 18 C 1.36590 * 119.84771 * 179.61850 * 17 16 14 19 19 C 1.38961 * 120.81552 * 359.66387 * 18 17 16 20 20 C 1.36459 * 120.63198 * 0.05384 * 19 18 17 21 21 C 1.39945 * 119.63825 * 359.97034 * 20 19 18 22 22 H 0.97003 * 119.99764 * 0.02562 * 1 2 3 23 23 H 0.96709 * 113.99538 * 300.00332 * 11 9 7 24 24 H 1.08002 * 120.07212 * 359.30479 * 17 16 14 25 25 H 1.07999 * 119.58926 * 179.69595 * 18 17 16 26 26 H 1.08010 * 119.68271 * 180.02562 * 19 18 17 27 27 H 1.08000 * 120.18044 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 1 0.6247 -2.5570 -0.8896 11 8 0.4291 -2.5745 1.1670 12 6 2.2304 -3.6445 0.0005 13 7 2.9359 -4.0512 1.0170 14 7 3.7333 -5.1382 0.6443 15 1 4.3454 -5.6134 1.2278 16 6 3.5162 -5.4199 -0.6791 17 6 4.0185 -6.3779 -1.5567 18 6 3.5873 -6.4055 -2.8524 19 6 2.6451 -5.4918 -3.3087 20 6 2.1311 -4.5457 -2.4703 21 6 2.5573 -4.4965 -1.1382 22 1 -0.4850 0.8401 -0.0004 23 1 0.9211 -2.5290 1.9984 24 1 4.7510 -7.0941 -1.2146 25 1 3.9832 -7.1470 -3.5305 26 1 2.3167 -5.5304 -4.3370 27 1 1.3995 -3.8388 -2.8328 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001535822969.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:21 Heat of formation + Delta-G solvation = 29.665285 kcal Electronic energy + Delta-G solvation = -14012.673241 eV Core-core repulsion = 11543.521899 eV Total energy + Delta-G solvation = -2469.151342 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 218.080 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.70314 -36.83473 -35.52820 -32.18427 -31.89653 -29.42677 -29.10509 -26.95645 -23.38233 -22.54856 -21.68124 -19.22169 -17.49404 -16.98306 -16.30333 -14.97228 -14.68370 -14.59306 -14.23253 -13.75357 -13.56741 -12.94676 -12.60339 -11.65780 -11.57799 -11.33936 -11.02769 -10.92935 -10.75866 -10.26635 -10.17643 -9.66970 -9.30346 -8.62942 -8.40507 -8.21766 -7.50765 -6.06490 -4.24808 1.37485 1.88479 3.13903 3.24588 3.28025 3.34879 3.40062 4.18297 4.38705 4.97673 5.13030 5.20388 5.29048 5.36385 5.60085 5.73690 6.09157 6.22910 6.27090 6.36995 6.67143 6.85605 7.04256 7.22975 7.44852 7.77625 7.82452 8.01878 8.33012 8.76226 9.28134 9.50058 10.97405 Molecular weight = 218.08amu Principal moments of inertia in cm(-1) A = 0.037507 B = 0.008492 C = 0.008066 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 746.338443 B = 3296.279755 C = 3470.737871 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.858 5.858 2 C 0.081 3.919 3 Si 0.896 3.104 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.561 4.561 8 H 0.058 0.942 9 C 0.300 3.700 10 H 0.081 0.919 11 O -0.556 6.556 12 C 0.119 3.881 13 N -0.261 5.261 14 N -0.526 5.526 15 H 0.431 0.569 16 C 0.124 3.876 17 C -0.154 4.154 18 C -0.076 4.076 19 C -0.176 4.176 20 C -0.026 4.026 21 C -0.169 4.169 22 H 0.263 0.737 23 H 0.355 0.645 24 H 0.118 0.882 25 H 0.122 0.878 26 H 0.121 0.879 27 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.066 -10.071 -4.111 12.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.494 5.494 2 C -0.125 4.125 3 Si 0.723 3.277 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.198 1.198 7 C -0.599 4.599 8 H 0.076 0.924 9 C 0.241 3.759 10 H 0.098 0.902 11 O -0.358 6.358 12 C -0.060 4.060 13 N -0.075 5.075 14 N -0.238 5.238 15 H 0.274 0.726 16 C 0.007 3.993 17 C -0.177 4.177 18 C -0.097 4.097 19 C -0.196 4.196 20 C -0.046 4.046 21 C -0.178 4.178 22 H 0.073 0.927 23 H 0.199 0.801 24 H 0.136 0.864 25 H 0.140 0.860 26 H 0.139 0.861 27 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 5.679 -9.821 -3.283 11.810 hybrid contribution 1.320 0.471 -0.152 1.410 sum 6.998 -9.349 -3.435 12.173 Atomic orbital electron populations 1.70066 1.05889 1.26822 1.46588 1.25000 0.94766 0.99150 0.93608 0.86554 0.79942 0.82958 0.78280 1.20379 1.20977 1.19781 1.21430 0.93269 0.90134 1.55097 0.92368 1.18121 0.85092 0.85353 0.87371 0.90185 1.86564 1.37694 1.95984 1.15579 1.25698 0.96047 0.96152 0.88084 1.76599 1.06784 1.00461 1.23642 1.46042 1.40526 1.30045 1.07199 0.72610 1.18916 0.97163 0.96829 0.86383 1.19698 1.04553 1.00036 0.93392 1.20595 0.96400 0.98137 0.94523 1.20567 1.01013 0.98069 0.99954 1.20498 0.96960 0.96352 0.90805 1.20010 1.02448 0.99393 0.95909 0.92697 0.80062 0.86442 0.86046 0.86059 0.85203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.77 12.84 55.43 0.71 -24.05 15 2 C 0.08 2.25 5.40 -17.82 -0.10 2.15 15 3 Si 0.90 21.15 29.54 -169.99 -5.02 16.12 15 4 H -0.28 -6.44 7.11 56.52 0.40 -6.04 15 5 H -0.28 -6.63 7.11 56.52 0.40 -6.22 15 6 H -0.27 -6.44 7.11 56.52 0.40 -6.04 15 7 C -0.56 -15.50 8.75 -34.44 -0.30 -15.81 15 8 H 0.06 1.64 7.74 -52.49 -0.41 1.23 15 9 C 0.30 7.78 3.35 -29.03 -0.10 7.69 15 10 H 0.08 2.15 8.14 -51.93 -0.42 1.73 15 11 O -0.56 -14.72 12.72 -35.23 -0.45 -15.17 15 12 C 0.12 2.75 6.24 -80.19 -0.50 2.25 15 13 N -0.26 -5.71 12.46 34.84 0.43 -5.28 15 14 N -0.53 -9.37 7.37 32.36 0.24 -9.13 15 15 H 0.43 5.92 8.96 -182.77 -1.64 4.28 15 16 C 0.12 2.21 7.34 -84.17 -0.62 1.60 15 17 C -0.15 -2.20 10.03 -39.78 -0.40 -2.60 15 18 C -0.08 -0.99 9.96 -39.91 -0.40 -1.39 15 19 C -0.18 -2.51 9.97 -39.96 -0.40 -2.91 15 20 C -0.03 -0.45 10.07 -39.58 -0.40 -0.85 15 21 C -0.17 -3.44 6.33 -105.21 -0.67 -4.11 15 22 H 0.26 7.16 8.31 -40.82 -0.34 6.82 15 23 H 0.35 8.65 8.95 45.56 0.41 9.06 15 24 H 0.12 1.31 8.06 -52.49 -0.42 0.89 15 25 H 0.12 1.17 8.06 -52.49 -0.42 0.75 15 26 H 0.12 1.38 8.06 -52.48 -0.42 0.96 15 27 H 0.13 2.17 8.06 -52.49 -0.42 1.75 15 LS Contribution 248.00 15.07 3.74 3.74 Total: -1.00 -31.48 248.00 -7.10 -38.58 By element: Atomic # 1 Polarization: 12.05 SS G_CDS: -2.89 Total: 9.16 kcal Atomic # 6 Polarization: -10.10 SS G_CDS: -3.87 Total: -13.97 kcal Atomic # 7 Polarization: -39.85 SS G_CDS: 1.38 Total: -38.46 kcal Atomic # 8 Polarization: -14.72 SS G_CDS: -0.45 Total: -15.17 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 3.74 Total: 3.74 kcal Total: -31.48 -7.10 -38.58 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001535822969.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.249 kcal (2) G-P(sol) polarization free energy of solvation -31.479 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.584 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.665 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds