Wall clock time and date at job start Mon Mar 30 2020 02:54:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86803 * 119.99619 * 2 1 4 4 H 1.48507 * 109.47138 * 269.99735 * 3 2 1 5 5 H 1.48490 * 109.47729 * 30.00014 * 3 2 1 6 6 H 1.48504 * 109.47078 * 150.00117 * 3 2 1 7 7 C 1.37872 * 120.00262 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00414 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99631 * 0.02562 * 7 2 1 10 10 H 1.09000 * 109.47427 * 59.99742 * 9 7 2 11 11 O 1.42898 * 109.47168 * 299.99589 * 9 7 2 12 12 C 1.50705 * 109.46746 * 179.97438 * 9 7 2 13 13 N 1.30245 * 126.10838 * 75.02366 * 12 9 7 14 14 N 1.39872 * 110.08700 * 179.97438 * 13 12 9 15 15 H 0.97001 * 125.45893 * 179.97438 * 14 13 12 16 16 C 1.37034 * 109.07457 * 0.27056 * 14 13 12 17 17 C 1.39295 * 133.84063 * 180.45772 * 16 14 13 18 18 C 1.36590 * 119.84771 * 179.61850 * 17 16 14 19 19 C 1.38961 * 120.81552 * 359.66387 * 18 17 16 20 20 C 1.36459 * 120.63198 * 0.05384 * 19 18 17 21 21 C 1.39945 * 119.63825 * 359.97034 * 20 19 18 22 22 H 0.97003 * 119.99764 * 0.02562 * 1 2 3 23 23 H 0.96709 * 113.99538 * 300.00332 * 11 9 7 24 24 H 1.08002 * 120.07212 * 359.30479 * 17 16 14 25 25 H 1.07999 * 119.58926 * 179.69595 * 18 17 16 26 26 H 1.08010 * 119.68271 * 180.02562 * 19 18 17 27 27 H 1.08000 * 120.18044 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 1 0.6247 -2.5570 -0.8896 11 8 0.4291 -2.5745 1.1670 12 6 2.2304 -3.6445 0.0005 13 7 2.9359 -4.0512 1.0170 14 7 3.7333 -5.1382 0.6443 15 1 4.3454 -5.6134 1.2278 16 6 3.5162 -5.4199 -0.6791 17 6 4.0185 -6.3779 -1.5567 18 6 3.5873 -6.4055 -2.8524 19 6 2.6451 -5.4918 -3.3087 20 6 2.1311 -4.5457 -2.4703 21 6 2.5573 -4.4965 -1.1382 22 1 -0.4850 0.8401 -0.0004 23 1 0.9211 -2.5290 1.9984 24 1 4.7510 -7.0941 -1.2146 25 1 3.9832 -7.1470 -3.5305 26 1 2.3167 -5.5304 -4.3370 27 1 1.3995 -3.8388 -2.8328 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001535822969.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:21 Heat of formation + Delta-G solvation = 6.003708 kcal Electronic energy + Delta-G solvation = -14013.699284 eV Core-core repulsion = 11543.521899 eV Total energy + Delta-G solvation = -2470.177385 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 218.080 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -42.11796 -38.23900 -37.40990 -34.33005 -33.37554 -30.78389 -30.48899 -28.91379 -25.35348 -23.83224 -22.96978 -20.91335 -19.18631 -18.75529 -17.64808 -16.71924 -16.59789 -16.04799 -15.71564 -15.29023 -14.88806 -14.77527 -14.32140 -13.46661 -13.12376 -12.81695 -12.76560 -12.69525 -12.14391 -12.02109 -11.79163 -11.48848 -10.99533 -10.72118 -10.41925 -9.57036 -8.85234 -8.17639 -6.44852 0.07952 0.64192 1.39912 1.40963 1.51188 1.60598 1.89715 2.39139 2.93099 3.07136 3.69077 3.74415 3.92475 4.20112 4.25334 4.47080 4.56596 4.74435 4.99152 5.09046 5.40913 5.44945 5.60704 5.62424 5.67732 5.93687 6.05069 6.54183 6.60648 6.76770 7.21684 7.37741 8.86155 Molecular weight = 218.08amu Principal moments of inertia in cm(-1) A = 0.037507 B = 0.008492 C = 0.008066 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 746.338443 B = 3296.279755 C = 3470.737871 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.034 3.966 3 Si 0.965 3.035 4 H -0.268 1.268 5 H -0.276 1.276 6 H -0.272 1.272 7 C -0.574 4.574 8 H 0.047 0.953 9 C 0.304 3.696 10 H 0.056 0.944 11 O -0.571 6.571 12 C 0.087 3.913 13 N -0.282 5.282 14 N -0.513 5.513 15 H 0.448 0.552 16 C 0.113 3.887 17 C -0.147 4.147 18 C -0.064 4.064 19 C -0.159 4.159 20 C -0.059 4.059 21 C -0.207 4.207 22 H 0.267 0.733 23 H 0.360 0.640 24 H 0.157 0.843 25 H 0.171 0.829 26 H 0.155 0.845 27 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.034 -11.609 -5.523 15.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.169 4.169 3 Si 0.789 3.211 4 H -0.193 1.193 5 H -0.202 1.202 6 H -0.197 1.197 7 C -0.612 4.612 8 H 0.065 0.935 9 C 0.244 3.756 10 H 0.074 0.926 11 O -0.374 6.374 12 C -0.091 4.091 13 N -0.097 5.097 14 N -0.229 5.229 15 H 0.294 0.706 16 C -0.004 4.004 17 C -0.169 4.169 18 C -0.084 4.084 19 C -0.179 4.179 20 C -0.079 4.079 21 C -0.215 4.215 22 H 0.076 0.924 23 H 0.205 0.795 24 H 0.175 0.825 25 H 0.189 0.811 26 H 0.173 0.827 27 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 7.658 -11.374 -4.698 14.495 hybrid contribution 0.748 0.788 0.211 1.107 sum 8.407 -10.586 -4.487 14.243 Atomic orbital electron populations 1.70177 1.07391 1.27914 1.47417 1.25819 0.95584 1.02594 0.92935 0.85486 0.78435 0.78512 0.78714 1.19270 1.20160 1.19721 1.21602 0.92788 0.91515 1.55296 0.93495 1.17762 0.85210 0.86498 0.86115 0.92599 1.86499 1.38529 1.96193 1.16139 1.25131 0.96892 0.96778 0.90270 1.76398 1.07354 1.01954 1.23967 1.45910 1.40061 1.28998 1.07911 0.70562 1.19310 0.97158 0.97489 0.86396 1.20237 1.04387 0.99139 0.93142 1.21197 0.94665 0.97872 0.94666 1.21025 0.99740 0.96266 1.00832 1.20643 0.98360 0.98241 0.90673 1.20212 1.04457 1.00278 0.96532 0.92393 0.79474 0.82527 0.81124 0.82735 0.86274 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -52.98 12.84 21.45 0.28 -52.71 15 2 C 0.03 1.94 5.40 84.65 0.46 2.39 15 3 Si 0.96 44.04 29.54 68.60 2.03 46.07 15 4 H -0.27 -11.70 7.11 99.48 0.71 -10.99 15 5 H -0.28 -12.20 7.11 99.48 0.71 -11.49 15 6 H -0.27 -12.31 7.11 99.48 0.71 -11.60 15 7 C -0.57 -33.00 8.75 25.60 0.22 -32.78 15 8 H 0.05 2.74 7.74 -2.91 -0.02 2.72 15 9 C 0.30 16.65 3.35 29.10 0.10 16.75 15 10 H 0.06 3.25 8.14 -2.39 -0.02 3.23 15 11 O -0.57 -31.86 12.72 -148.98 -1.89 -33.75 15 12 C 0.09 4.22 6.24 44.79 0.28 4.50 15 13 N -0.28 -12.64 12.46 -43.69 -0.54 -13.18 15 14 N -0.51 -17.91 7.37 -51.53 -0.38 -18.29 15 15 H 0.45 11.65 8.96 -213.47 -1.91 9.73 15 16 C 0.11 3.86 7.34 39.22 0.29 4.15 15 17 C -0.15 -3.57 10.03 22.14 0.22 -3.35 15 18 C -0.06 -1.34 9.96 22.06 0.22 -1.12 15 19 C -0.16 -4.03 9.97 22.03 0.22 -3.81 15 20 C -0.06 -2.06 10.07 22.27 0.22 -1.83 15 21 C -0.21 -8.53 6.33 -20.24 -0.13 -8.66 15 22 H 0.27 14.82 8.31 -92.71 -0.77 14.05 15 23 H 0.36 18.58 8.95 -74.05 -0.66 17.91 15 24 H 0.16 2.58 8.06 -2.91 -0.02 2.56 15 25 H 0.17 2.01 8.06 -2.91 -0.02 1.98 15 26 H 0.16 2.84 8.06 -2.91 -0.02 2.81 15 27 H 0.12 4.24 8.06 -2.91 -0.02 4.21 15 Total: -1.00 -70.73 248.00 0.22 -70.51 By element: Atomic # 1 Polarization: 26.49 SS G_CDS: -1.36 Total: 25.12 kcal Atomic # 6 Polarization: -25.86 SS G_CDS: 2.10 Total: -23.76 kcal Atomic # 7 Polarization: -83.54 SS G_CDS: -0.65 Total: -84.18 kcal Atomic # 8 Polarization: -31.86 SS G_CDS: -1.89 Total: -33.75 kcal Atomic # 14 Polarization: 44.04 SS G_CDS: 2.03 Total: 46.07 kcal Total: -70.73 0.22 -70.51 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001535822969.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.510 kcal (2) G-P(sol) polarization free energy of solvation -70.729 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.506 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.004 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds