Wall clock time and date at job start Mon Mar 30 2020 02:48:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13603 * 1 3 3 C 1.47204 * 179.97438 * 2 1 4 4 N 1.46502 * 109.46685 * 203.38333 * 3 2 1 5 5 C 1.36813 * 119.99763 * 263.94327 * 4 3 2 6 6 H 1.08004 * 120.00129 * 198.31546 * 5 4 3 7 7 C 1.39070 * 120.00167 * 18.32493 * 5 4 3 8 8 N 1.31344 * 120.00016 * 21.21121 * 7 5 4 9 9 Si 1.86801 * 120.00011 * 201.20935 * 7 5 4 10 10 H 1.48506 * 109.47010 * 59.99704 * 9 7 5 11 11 H 1.48498 * 109.46993 * 179.97438 * 9 7 5 12 12 H 1.48500 * 109.47166 * 299.99868 * 9 7 5 13 13 C 1.34776 * 119.99861 * 84.22772 * 4 3 2 14 14 O 1.21664 * 119.99845 * 179.72155 * 13 4 3 15 15 C 1.43197 * 120.00389 * 359.71755 * 13 4 3 16 16 C 3.79782 * 111.88281 * 278.47833 * 2 1 3 17 17 C 4.79528 * 102.56760 * 290.23076 * 2 1 3 18 18 C 1.52998 * 117.49821 * 207.30511 * 17 16 15 19 19 C 1.52998 * 117.49943 * 138.64469 * 17 16 15 20 20 H 1.08993 * 109.47437 * 83.38549 * 3 2 1 21 21 H 1.09000 * 109.46926 * 323.37565 * 3 2 1 22 22 H 0.97007 * 120.00231 * 180.02562 * 8 7 5 23 23 H 1.09005 * 115.54824 * 352.97775 * 17 16 15 24 24 H 1.08991 * 117.49657 * 359.97438 * 18 17 16 25 25 H 1.08998 * 117.49328 * 145.02104 * 18 17 16 26 26 H 1.08998 * 117.50195 * 214.98442 * 19 17 16 27 27 H 1.09000 * 117.49804 * 359.97438 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6081 0.0007 0.0000 4 7 3.0957 1.2687 0.5482 5 6 3.4411 2.2902 -0.2939 6 1 4.0650 3.0965 0.0627 7 6 2.9888 2.2904 -1.6089 8 7 1.9314 1.5850 -1.9398 9 14 3.8849 3.2941 -2.9047 10 1 5.2904 2.8260 -3.0088 11 1 3.2091 3.1255 -4.2162 12 1 3.8680 4.7281 -2.5193 13 6 3.2096 1.4269 1.8818 14 8 3.6193 2.4782 2.3368 15 6 2.8481 0.3578 2.7632 16 6 2.5515 -0.5196 3.4857 17 6 2.1794 -1.6185 4.3916 18 6 3.2660 -2.1697 5.3171 19 6 2.7888 -2.9953 4.1197 20 1 2.9715 -0.1175 -1.0207 21 1 2.9717 -0.8240 0.6131 22 1 1.6161 1.5848 -2.8572 23 1 1.1598 -1.5863 4.7757 24 1 4.2563 -1.7189 5.2548 25 1 2.9611 -2.5005 6.3099 26 1 2.1702 -3.8689 4.3252 27 1 3.4648 -3.0875 3.2697 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001546233486.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:36 Heat of formation + Delta-G solvation = 82.177008 kcal Electronic energy + Delta-G solvation = -13631.415706 eV Core-core repulsion = 11164.541443 eV Total energy + Delta-G solvation = -2466.874263 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 218.080 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -38.81129 -37.41352 -35.79140 -34.37999 -32.40585 -31.56236 -27.55390 -25.75698 -23.63185 -22.44054 -21.04237 -18.07556 -17.56988 -16.48056 -16.18782 -15.21840 -14.79540 -14.36525 -13.65652 -13.31807 -12.99927 -12.41058 -12.12316 -11.85509 -11.67648 -11.53121 -11.40707 -11.20360 -11.01412 -10.61742 -10.50258 -10.46177 -9.70826 -9.47285 -9.30731 -8.91964 -8.17954 -6.64477 -4.10345 2.30829 2.70806 3.13328 3.16731 3.19780 3.62021 3.94760 4.01721 4.07286 4.21352 4.30617 4.80314 4.84576 4.91451 5.01838 5.18903 5.40571 5.55502 5.69728 5.95247 6.04118 6.05231 6.17140 6.42743 7.34451 7.73461 7.88973 8.16495 8.72823 8.85165 9.03976 9.61311 10.41217 Molecular weight = 218.08amu Principal moments of inertia in cm(-1) A = 0.039325 B = 0.007876 C = 0.007068 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 711.839971 B = 3554.467631 C = 3960.466417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.469 5.469 2 C 0.247 3.753 3 C 0.222 3.778 4 N -0.419 5.419 5 C -0.314 4.314 6 H 0.114 0.886 7 C 0.034 3.966 8 N -0.867 5.867 9 Si 0.935 3.065 10 H -0.269 1.269 11 H -0.283 1.283 12 H -0.270 1.270 13 C 0.546 3.454 14 O -0.563 6.563 15 C -0.164 4.164 16 C -0.128 4.128 17 C -0.046 4.046 18 C -0.166 4.166 19 C -0.165 4.165 20 H 0.130 0.870 21 H 0.085 0.915 22 H 0.278 0.722 23 H 0.127 0.873 24 H 0.099 0.901 25 H 0.102 0.898 26 H 0.103 0.897 27 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.500 -9.350 5.008 11.169 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.149 5.149 2 C -0.071 4.071 3 C 0.094 3.906 4 N -0.137 5.137 5 C -0.441 4.441 6 H 0.132 0.868 7 C -0.171 4.171 8 N -0.504 5.504 9 Si 0.760 3.240 10 H -0.194 1.194 11 H -0.208 1.208 12 H -0.195 1.195 13 C 0.336 3.664 14 O -0.447 6.447 15 C -0.167 4.167 16 C -0.131 4.131 17 C -0.064 4.064 18 C -0.203 4.203 19 C -0.202 4.202 20 H 0.148 0.852 21 H 0.103 0.897 22 H 0.089 0.911 23 H 0.144 0.856 24 H 0.118 0.882 25 H 0.120 0.880 26 H 0.121 0.879 27 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 1.924 -8.832 4.997 10.329 hybrid contribution 0.517 0.516 -0.799 1.082 sum 2.441 -8.317 4.198 9.631 Atomic orbital electron populations 1.80875 1.13494 1.09329 1.11174 1.29143 0.95240 0.91838 0.90893 1.18758 0.81877 0.87027 1.02909 1.43483 1.54490 1.12171 1.03566 1.19777 1.29528 1.04180 0.90575 0.86802 1.25411 0.94835 0.97951 0.98917 1.69850 1.19108 1.40916 1.20519 0.85851 0.79434 0.80047 0.78653 1.19409 1.20831 1.19516 1.14683 0.85854 0.84753 0.81083 1.90702 1.50960 1.27582 1.75450 1.21455 1.01166 0.95559 0.98510 1.21074 0.99074 0.95273 0.97711 1.18661 0.98714 0.89944 0.99083 1.23075 0.99027 1.03058 0.95167 1.23074 1.03509 0.93219 1.00360 0.85229 0.89678 0.91142 0.85550 0.88231 0.87963 0.87898 0.88148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -11.55 18.54 42.16 0.78 -10.77 15 2 C 0.25 5.72 13.42 -20.76 -0.28 5.44 15 3 C 0.22 4.62 4.91 -6.83 -0.03 4.59 15 4 N -0.42 -10.25 2.59 -120.67 -0.31 -10.57 15 5 C -0.31 -8.10 9.31 -15.02 -0.14 -8.24 15 6 H 0.11 3.05 7.39 -52.48 -0.39 2.66 15 7 C 0.03 0.84 4.86 -17.45 -0.08 0.75 15 8 N -0.87 -21.63 9.49 55.50 0.53 -21.10 15 9 Si 0.93 19.14 29.60 -169.99 -5.03 14.11 15 10 H -0.27 -5.35 7.11 56.52 0.40 -4.94 15 11 H -0.28 -5.75 7.11 56.52 0.40 -5.35 15 12 H -0.27 -5.66 7.11 56.52 0.40 -5.26 15 13 C 0.55 13.71 7.42 -14.34 -0.11 13.60 15 14 O -0.56 -15.94 16.74 5.22 0.09 -15.85 15 15 C -0.16 -3.52 11.66 -38.83 -0.45 -3.97 15 16 C -0.13 -2.32 13.47 -37.12 -0.50 -2.82 15 17 C -0.05 -0.61 6.21 -93.41 -0.58 -1.19 15 18 C -0.17 -1.73 10.21 -26.69 -0.27 -2.00 15 19 C -0.16 -1.70 10.21 -26.69 -0.27 -1.97 15 20 H 0.13 2.65 6.48 -51.93 -0.34 2.31 15 21 H 0.09 1.47 7.13 -51.93 -0.37 1.10 15 22 H 0.28 6.66 8.31 -40.82 -0.34 6.32 15 23 H 0.13 1.46 8.14 -51.93 -0.42 1.04 15 24 H 0.10 1.10 8.14 -51.93 -0.42 0.67 15 25 H 0.10 0.83 8.14 -51.93 -0.42 0.40 15 26 H 0.10 0.84 8.14 -51.93 -0.42 0.41 15 27 H 0.10 1.06 8.14 -51.93 -0.42 0.64 15 LS Contribution 259.98 15.07 3.92 3.92 Total: -1.00 -30.97 259.98 -5.10 -36.06 By element: Atomic # 1 Polarization: 2.35 SS G_CDS: -2.34 Total: 0.01 kcal Atomic # 6 Polarization: 6.91 SS G_CDS: -2.72 Total: 4.19 kcal Atomic # 7 Polarization: -43.43 SS G_CDS: 1.00 Total: -42.44 kcal Atomic # 8 Polarization: -15.94 SS G_CDS: 0.09 Total: -15.85 kcal Atomic # 14 Polarization: 19.14 SS G_CDS: -5.03 Total: 14.11 kcal Total LS contribution 3.92 Total: 3.92 kcal Total: -30.97 -5.10 -36.06 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001546233486.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.239 kcal (2) G-P(sol) polarization free energy of solvation -30.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.062 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.177 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds