Wall clock time and date at job start Mon Mar 30 2020 02:26:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50691 * 1 3 3 N 1.32009 * 125.95624 * 2 1 4 4 C 1.33335 * 110.02326 * 179.79580 * 3 2 1 5 5 C 1.40834 * 131.71461 * 179.64101 * 4 3 2 6 6 O 1.35848 * 120.39630 * 0.60137 * 5 4 3 7 7 C 1.38115 * 119.21278 * 180.32378 * 5 4 3 8 8 C 1.40065 * 119.50136 * 0.24969 * 7 5 4 9 9 C 1.35332 * 120.19113 * 359.97438 * 8 7 5 10 10 N 1.36334 * 120.83468 * 359.97438 * 9 8 7 11 11 C 1.38486 * 132.34105 * 180.02562 * 10 9 8 12 12 C 1.39824 * 126.90028 * 359.97438 * 11 10 9 13 13 H 1.08007 * 120.00376 * 146.67619 * 12 11 10 14 14 C 1.39834 * 120.00285 * 326.67907 * 12 11 10 15 15 N 1.31056 * 120.00070 * 339.64995 * 14 12 11 16 16 Si 1.86797 * 120.00188 * 159.65193 * 14 12 11 17 17 H 1.48499 * 109.47516 * 89.99788 * 16 14 12 18 18 H 1.48504 * 109.47142 * 210.00025 * 16 14 12 19 19 H 1.48505 * 109.47309 * 329.99930 * 16 14 12 20 20 H 1.09008 * 109.47319 * 264.68456 * 1 2 3 21 21 H 1.09002 * 109.47241 * 24.67740 * 1 2 3 22 22 H 1.08998 * 109.47239 * 144.68632 * 1 2 3 23 23 H 0.96709 * 113.99806 * 269.72456 * 6 5 4 24 24 H 1.08007 * 120.24909 * 180.27367 * 7 5 4 25 25 H 1.08000 * 119.90648 * 179.97438 * 8 7 5 26 26 H 1.08001 * 119.58429 * 180.02562 * 9 8 7 27 27 H 0.96998 * 119.99905 * 177.31751 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2820 1.0686 0.0000 4 6 3.5641 0.7025 0.0045 5 6 4.7539 1.4562 -0.0003 6 8 4.7076 2.8138 0.0010 7 6 5.9684 0.7985 -0.0003 8 6 5.9944 -0.6019 -0.0010 9 6 4.8376 -1.3041 -0.0011 10 7 3.6328 -0.6660 0.0000 11 6 2.3294 -1.1340 0.0007 12 6 1.9171 -2.4700 -0.0002 13 1 1.0114 -2.7561 0.5142 14 6 2.6772 -3.4360 -0.6669 15 7 3.5224 -3.0747 -1.6011 16 14 2.4881 -5.2413 -0.2260 17 1 1.4294 -5.8491 -1.0715 18 1 3.7743 -5.9455 -0.4607 19 1 2.1102 -5.3645 1.2049 20 1 -0.3634 -0.0952 1.0233 21 1 -0.3634 0.9338 -0.4291 22 1 -0.3633 -0.8385 -0.5940 23 1 4.6945 3.2077 -0.8822 24 1 6.8911 1.3598 0.0005 25 1 6.9405 -1.1229 -0.0015 26 1 4.8691 -2.3837 -0.0012 27 1 4.0778 -3.7402 -2.0364 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000026173811.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:26:51 Heat of formation + Delta-G solvation = 6.027042 kcal Electronic energy + Delta-G solvation = -14439.966990 eV Core-core repulsion = 11969.790617 eV Total energy + Delta-G solvation = -2470.176373 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 218.080 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -42.84745 -39.00044 -37.22798 -35.72357 -33.01335 -32.05512 -29.88234 -28.63613 -26.53693 -23.41227 -23.25483 -20.99198 -20.05004 -18.52322 -17.75254 -17.07306 -16.82342 -16.41425 -15.98108 -15.41523 -14.83538 -14.02710 -13.82862 -13.59736 -13.53005 -13.18285 -12.93482 -12.86412 -12.47077 -12.07738 -12.00659 -11.64731 -11.27415 -10.90759 -10.59513 -9.21058 -8.87657 -8.33256 -6.29172 0.10045 0.73524 1.39513 1.41470 1.54833 2.15520 2.21071 2.32186 2.84544 3.04647 3.42137 3.71458 4.13673 4.37023 4.39238 4.67037 4.85384 4.98077 5.10084 5.15630 5.20984 5.31940 5.37030 5.46190 5.77395 5.98514 6.31728 6.49112 6.74307 6.82310 6.99148 7.52291 8.26616 Molecular weight = 218.08amu Principal moments of inertia in cm(-1) A = 0.031594 B = 0.012319 C = 0.009223 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 886.043165 B = 2272.379513 C = 3035.114793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.031 4.031 2 C -0.101 4.101 3 N -0.497 5.497 4 C 0.075 3.925 5 C 0.124 3.876 6 O -0.489 6.489 7 C -0.152 4.152 8 C -0.169 4.169 9 C 0.084 3.916 10 N -0.377 5.377 11 C 0.147 3.853 12 C -0.479 4.479 13 H 0.100 0.900 14 C 0.035 3.965 15 N -0.838 5.838 16 Si 0.984 3.016 17 H -0.263 1.263 18 H -0.264 1.264 19 H -0.260 1.260 20 H 0.062 0.938 21 H 0.061 0.939 22 H 0.066 0.934 23 H 0.401 0.599 24 H 0.167 0.833 25 H 0.175 0.825 26 H 0.147 0.853 27 H 0.292 0.708 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.521 -1.009 0.513 4.660 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C -0.234 4.234 3 N -0.217 5.217 4 C -0.163 4.163 5 C 0.077 3.923 6 O -0.299 6.299 7 C -0.175 4.175 8 C -0.191 4.191 9 C -0.038 4.038 10 N -0.056 5.056 11 C 0.035 3.965 12 C -0.513 4.513 13 H 0.118 0.882 14 C -0.179 4.179 15 N -0.466 5.466 16 Si 0.804 3.196 17 H -0.188 1.188 18 H -0.189 1.189 19 H -0.184 1.184 20 H 0.081 0.919 21 H 0.080 0.920 22 H 0.084 0.916 23 H 0.259 0.741 24 H 0.184 0.816 25 H 0.192 0.808 26 H 0.164 0.836 27 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 4.345 -0.286 0.918 4.450 hybrid contribution 0.120 -1.347 -0.640 1.496 sum 4.465 -1.633 0.277 4.762 Atomic orbital electron populations 1.19684 0.86270 1.01531 1.01356 1.21780 0.97176 0.87743 1.16740 1.69618 0.99344 1.31776 1.21002 1.20998 0.94278 0.82519 1.18474 1.17513 0.88497 0.82847 1.03458 1.84687 1.96051 1.14653 1.34543 1.21515 0.96548 0.94362 1.05096 1.20803 0.97339 0.93808 1.07100 1.21902 0.83363 0.99136 0.99415 1.42693 1.06295 1.06927 1.49669 1.19082 0.80075 0.95540 1.01785 1.18647 1.11074 0.89686 1.31940 0.88231 1.26688 0.93506 1.05917 0.91748 1.70008 1.20358 1.39134 1.17122 0.85159 0.79109 0.75471 0.79811 1.18801 1.18851 1.18377 0.91929 0.92047 0.91555 0.74137 0.81573 0.80771 0.83586 0.89773 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.03 -1.31 10.21 71.23 0.73 -0.59 15 2 C -0.10 -5.39 7.20 42.98 0.31 -5.08 15 3 N -0.50 -27.35 11.23 -179.30 -2.01 -29.36 15 4 C 0.07 3.93 7.73 133.86 1.03 4.96 15 5 C 0.12 5.38 6.77 22.88 0.15 5.53 15 6 O -0.49 -18.47 13.53 -91.84 -1.24 -19.71 15 7 C -0.15 -5.44 10.07 22.68 0.23 -5.22 15 8 C -0.17 -6.15 9.99 22.04 0.22 -5.93 15 9 C 0.08 3.81 9.27 83.32 0.77 4.58 15 10 N -0.38 -19.87 2.91 -343.45 -1.00 -20.87 15 11 C 0.15 8.12 6.26 38.92 0.24 8.36 15 12 C -0.48 -24.79 8.95 23.04 0.21 -24.59 15 13 H 0.10 4.90 7.92 -2.91 -0.02 4.88 15 14 C 0.04 1.67 4.49 85.19 0.38 2.05 15 15 N -0.84 -41.15 10.62 21.82 0.23 -40.92 15 16 Si 0.98 35.72 29.61 68.60 2.03 37.75 15 17 H -0.26 -9.33 7.11 99.48 0.71 -8.63 15 18 H -0.26 -9.02 7.11 99.48 0.71 -8.31 15 19 H -0.26 -9.35 7.11 99.48 0.71 -8.64 15 20 H 0.06 2.43 8.14 -2.38 -0.02 2.42 15 21 H 0.06 2.43 8.14 -2.39 -0.02 2.42 15 22 H 0.07 2.71 8.09 -2.39 -0.02 2.70 15 23 H 0.40 11.14 9.06 -74.05 -0.67 10.47 15 24 H 0.17 4.48 8.06 -2.91 -0.02 4.46 15 25 H 0.17 4.70 8.06 -2.91 -0.02 4.68 15 26 H 0.15 6.60 6.01 -2.91 -0.02 6.58 15 27 H 0.29 12.88 8.30 -92.71 -0.77 12.11 15 Total: -1.00 -66.72 241.93 2.82 -63.90 By element: Atomic # 1 Polarization: 24.58 SS G_CDS: 0.53 Total: 25.12 kcal Atomic # 6 Polarization: -20.19 SS G_CDS: 4.28 Total: -15.91 kcal Atomic # 7 Polarization: -88.37 SS G_CDS: -2.78 Total: -91.15 kcal Atomic # 8 Polarization: -18.47 SS G_CDS: -1.24 Total: -19.71 kcal Atomic # 14 Polarization: 35.72 SS G_CDS: 2.03 Total: 37.75 kcal Total: -66.72 2.82 -63.90 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000026173811.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.925 kcal (2) G-P(sol) polarization free energy of solvation -66.722 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.203 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.824 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.898 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds