Wall clock time and date at job start Mon Mar 30 2020 02:22:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86801 * 120.00178 * 2 1 4 4 H 1.48504 * 109.47361 * 270.00108 * 3 2 1 5 5 H 1.48499 * 109.47038 * 29.99814 * 3 2 1 6 6 H 1.48495 * 109.47192 * 149.99931 * 3 2 1 7 7 C 1.37875 * 119.99909 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00148 * 359.97438 * 7 2 1 9 9 C 1.50702 * 120.00275 * 179.97438 * 7 2 1 10 10 H 1.09002 * 109.47199 * 300.00833 * 9 7 2 11 11 O 1.42908 * 109.46647 * 59.99816 * 9 7 2 12 12 C 1.50693 * 109.47529 * 179.97438 * 9 7 2 13 13 C 1.34287 * 126.52594 * 264.97550 * 12 9 7 14 14 N 1.36960 * 109.94143 * 179.97438 * 13 12 9 15 15 H 0.96998 * 125.04426 * 179.97438 * 14 13 12 16 16 C 1.37067 * 109.91738 * 0.02562 * 14 13 12 17 17 C 1.39340 * 134.66126 * 179.97438 * 16 14 13 18 18 C 1.36702 * 118.97574 * 180.25389 * 17 16 14 19 19 N 1.32301 * 121.66399 * 359.47296 * 18 17 16 20 20 C 1.31717 * 122.22793 * 0.54043 * 19 18 17 21 21 C 1.39352 * 119.97981 * 359.73669 * 20 19 18 22 22 H 0.97007 * 119.99789 * 0.02562 * 1 2 3 23 23 H 0.96698 * 113.99664 * 60.00571 * 11 9 7 24 24 H 1.07993 * 125.03227 * 359.96054 * 13 12 9 25 25 H 1.08002 * 120.50809 * 359.97271 * 17 16 14 26 26 H 1.08005 * 119.16431 * 179.74909 * 18 17 16 27 27 H 1.07995 * 120.00515 * 179.75376 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 1 3.8745 -0.6800 -0.8911 11 8 3.9882 -0.5207 1.1657 12 6 4.0138 -2.6149 -0.0010 13 6 4.3698 -3.3367 1.0740 14 7 4.7743 -4.5859 0.6847 15 1 5.0780 -5.2851 1.2846 16 6 4.6876 -4.7012 -0.6783 17 6 4.9601 -5.7148 -1.5948 18 6 4.7570 -5.4765 -2.9255 19 7 4.2997 -4.3140 -3.3610 20 6 4.0237 -3.3175 -2.5450 21 6 4.2064 -3.4707 -1.1721 22 1 -0.4850 0.8401 -0.0004 23 1 3.7032 -0.9245 1.9968 24 1 4.3414 -2.9843 2.0944 25 1 5.3304 -6.6723 -1.2594 26 1 4.9711 -6.2587 -3.6389 27 1 3.6557 -2.3822 -2.9400 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000074279454.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:24 Heat of formation + Delta-G solvation = -3.830774 kcal Electronic energy + Delta-G solvation = -14107.971808 eV Core-core repulsion = 11637.367968 eV Total energy + Delta-G solvation = -2470.603840 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 218.080 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -42.42781 -39.05317 -37.71650 -34.40204 -33.19685 -31.58998 -30.41065 -28.74383 -24.60402 -24.46971 -23.34149 -20.48945 -19.55474 -19.05752 -17.63436 -16.83437 -16.61400 -16.13742 -15.66019 -15.38084 -15.21658 -14.85075 -14.75273 -13.78376 -13.60729 -13.46535 -13.06321 -12.66258 -12.41892 -11.98729 -11.28534 -10.82342 -10.63910 -10.45068 -10.26410 -9.67321 -8.61709 -8.30424 -6.45326 0.04816 0.64037 1.44631 1.49267 1.76621 1.79879 2.18752 2.47124 3.03490 3.05703 3.64566 3.78424 3.97480 4.12253 4.14629 4.35601 4.62627 4.68483 4.78112 4.92864 5.07104 5.45024 5.49493 5.66586 5.74611 6.04342 6.17186 6.65856 6.72718 7.19020 7.21216 7.37363 8.83568 Molecular weight = 218.08amu Principal moments of inertia in cm(-1) A = 0.038911 B = 0.009309 C = 0.008405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 719.422151 B = 3007.214608 C = 3330.467533 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.941 5.941 2 C 0.029 3.971 3 Si 0.936 3.064 4 H -0.287 1.287 5 H -0.296 1.296 6 H -0.201 1.201 7 C -0.547 4.547 8 H 0.028 0.972 9 C 0.269 3.731 10 H 0.052 0.948 11 O -0.576 6.576 12 C -0.176 4.176 13 C 0.053 3.947 14 N -0.571 5.571 15 H 0.435 0.565 16 C 0.114 3.886 17 C -0.174 4.174 18 C 0.080 3.920 19 N -0.530 5.530 20 C 0.141 3.859 21 C -0.181 4.181 22 H 0.267 0.733 23 H 0.371 0.629 24 H 0.203 0.797 25 H 0.169 0.831 26 H 0.187 0.813 27 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.421 -10.137 2.279 16.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.170 4.170 3 Si 0.760 3.240 4 H -0.213 1.213 5 H -0.223 1.223 6 H -0.122 1.122 7 C -0.585 4.585 8 H 0.046 0.954 9 C 0.211 3.789 10 H 0.070 0.930 11 O -0.383 6.383 12 C -0.184 4.184 13 C -0.071 4.071 14 N -0.177 5.177 15 H 0.276 0.724 16 C -0.003 4.003 17 C -0.196 4.196 18 C -0.070 4.070 19 N -0.241 5.241 20 C -0.022 4.022 21 C -0.188 4.188 22 H 0.075 0.925 23 H 0.219 0.781 24 H 0.220 0.780 25 H 0.186 0.814 26 H 0.204 0.796 27 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 12.504 -9.709 1.069 15.866 hybrid contribution -0.594 0.116 1.290 1.425 sum 11.910 -9.593 2.359 15.474 Atomic orbital electron populations 1.70089 1.08586 1.28370 1.50993 1.25865 0.95224 1.03498 0.92435 0.86028 0.82082 0.77374 0.78475 1.21313 1.22288 1.12239 1.21618 0.91564 0.92779 1.52505 0.95409 1.17770 0.90328 0.84996 0.85846 0.92985 1.86641 1.77548 1.57354 1.16767 1.21236 1.06879 0.98380 0.91942 1.21893 1.01309 0.83972 0.99972 1.41475 1.57770 1.14005 1.04432 0.72396 1.18615 1.00438 0.95792 0.85407 1.21069 1.06823 0.99370 0.92365 1.22634 0.95556 0.94483 0.94292 1.67680 1.15128 1.01719 1.39591 1.22302 0.93977 0.97524 0.88424 1.20319 1.07203 0.96061 0.95264 0.92460 0.78081 0.78014 0.81388 0.79569 0.83820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.63 13.96 21.45 0.30 -58.33 15 2 C 0.03 1.68 5.47 84.65 0.46 2.15 15 3 Si 0.94 44.59 26.99 68.60 1.85 46.44 15 4 H -0.29 -13.62 7.11 99.48 0.71 -12.91 15 5 H -0.30 -14.03 7.11 99.48 0.71 -13.32 15 6 H -0.20 -8.93 5.31 99.48 0.53 -8.41 15 7 C -0.55 -30.75 9.33 25.60 0.24 -30.51 15 8 H 0.03 1.77 7.98 -2.91 -0.02 1.74 15 9 C 0.27 12.42 2.84 29.10 0.08 12.51 15 10 H 0.05 2.52 7.57 -2.39 -0.02 2.50 15 11 O -0.58 -23.83 9.93 -148.98 -1.48 -25.31 15 12 C -0.18 -7.08 5.38 -18.67 -0.10 -7.18 15 13 C 0.05 1.62 11.16 82.99 0.93 2.55 15 14 N -0.57 -14.43 6.05 -187.47 -1.13 -15.56 15 15 H 0.44 6.87 8.96 -92.71 -0.83 6.04 15 16 C 0.11 3.53 7.35 39.28 0.29 3.82 15 17 C -0.17 -4.34 10.09 22.18 0.22 -4.12 15 18 C 0.08 2.20 11.09 84.26 0.93 3.13 15 19 N -0.53 -18.98 10.34 -195.90 -2.03 -21.01 15 20 C 0.14 5.62 11.28 84.98 0.96 6.58 15 21 C -0.18 -7.11 6.40 -20.22 -0.13 -7.24 15 22 H 0.27 15.59 8.31 -92.70 -0.77 14.82 15 23 H 0.37 12.74 8.09 -74.06 -0.60 12.14 15 24 H 0.20 4.62 7.40 -2.91 -0.02 4.60 15 25 H 0.17 2.65 8.06 -2.91 -0.02 2.63 15 26 H 0.19 3.54 8.06 -2.91 -0.02 3.52 15 27 H 0.14 5.83 8.06 -2.91 -0.02 5.81 15 Total: -1.00 -73.93 239.65 1.00 -72.92 By element: Atomic # 1 Polarization: 19.56 SS G_CDS: -0.39 Total: 19.16 kcal Atomic # 6 Polarization: -22.20 SS G_CDS: 3.89 Total: -18.31 kcal Atomic # 7 Polarization: -92.04 SS G_CDS: -2.86 Total: -94.90 kcal Atomic # 8 Polarization: -23.83 SS G_CDS: -1.48 Total: -25.31 kcal Atomic # 14 Polarization: 44.59 SS G_CDS: 1.85 Total: 46.44 kcal Total: -73.93 1.00 -72.92 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000074279454.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.090 kcal (2) G-P(sol) polarization free energy of solvation -73.926 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.921 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds