Wall clock time and date at job start Mon Mar 30 2020 02:22:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00238 * 2 1 4 4 H 1.48498 * 109.47109 * 270.00337 * 3 2 1 5 5 H 1.48507 * 109.46754 * 30.00076 * 3 2 1 6 6 H 1.48498 * 109.47278 * 149.99907 * 3 2 1 7 7 C 1.37884 * 119.99985 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99697 * 359.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 180.27663 * 7 2 1 10 10 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 11 11 O 1.42899 * 109.47038 * 299.72024 * 9 7 2 12 12 C 1.50700 * 109.46869 * 179.72213 * 9 7 2 13 13 C 1.34277 * 126.52747 * 94.69097 * 12 9 7 14 14 N 1.36957 * 109.93887 * 179.82983 * 13 12 9 15 15 H 0.97002 * 125.04168 * 180.18413 * 14 13 12 16 16 C 1.37060 * 109.91961 * 0.44309 * 14 13 12 17 17 C 1.39340 * 134.66490 * 179.74132 * 16 14 13 18 18 C 1.36703 * 118.97981 * 179.97438 * 17 16 14 19 19 N 1.32304 * 121.66435 * 0.02562 * 18 17 16 20 20 C 1.31713 * 122.22604 * 359.95799 * 19 18 17 21 21 C 1.39355 * 119.98191 * 0.04560 * 20 19 18 22 22 H 0.96996 * 119.99730 * 359.97438 * 1 2 3 23 23 H 0.96699 * 113.99712 * 300.00343 * 11 9 7 24 24 H 1.07997 * 125.03350 * 359.97237 * 13 12 9 25 25 H 1.07999 * 120.51247 * 0.02562 * 17 16 14 26 26 H 1.08005 * 119.17064 * 179.97438 * 18 17 16 27 27 H 1.08002 * 120.00805 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5116 -1.1941 0.0058 10 1 3.8711 -0.6785 0.8962 11 8 3.9928 -0.5228 -1.1604 12 6 4.0138 -2.6149 0.0107 13 6 4.3679 -3.3412 -1.0618 14 7 4.7771 -4.5873 -0.6676 15 1 5.0826 -5.2880 -1.2648 16 6 4.6856 -4.6995 0.6953 17 6 4.9549 -5.7108 1.6152 18 6 4.7427 -5.4710 2.9442 19 7 4.2887 -4.3057 3.3759 20 6 4.0159 -3.3111 2.5566 21 6 4.2028 -3.4678 1.1846 22 1 -0.4849 0.8400 0.0004 23 1 3.7108 -0.9280 -1.9919 24 1 4.3369 -2.9934 -2.0837 25 1 5.3265 -6.6691 1.2835 26 1 4.9500 -6.2529 3.6599 27 1 3.6471 -2.3745 2.9481 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000074279457.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:26 Heat of formation + Delta-G solvation = -6.852316 kcal Electronic energy + Delta-G solvation = -14105.015217 eV Core-core repulsion = 11634.280354 eV Total energy + Delta-G solvation = -2470.734864 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 218.080 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -42.43565 -39.06267 -37.75535 -34.43630 -33.21015 -31.59814 -30.43184 -28.76927 -24.61412 -24.48613 -23.34593 -20.51944 -19.58001 -19.07606 -17.63877 -16.90428 -16.62687 -16.10964 -15.66611 -15.38409 -15.22281 -14.86540 -14.79459 -13.76472 -13.62423 -13.45917 -13.09814 -12.82021 -12.37227 -11.88987 -11.39139 -10.84436 -10.81880 -10.45644 -10.43656 -9.67859 -8.62338 -8.32633 -6.47620 0.04438 0.63653 1.45054 1.46618 1.61863 1.77408 2.18102 2.40542 2.99810 3.03424 3.64207 3.77880 3.95175 4.11576 4.12202 4.35147 4.61823 4.68089 4.76664 4.92566 5.06283 5.43666 5.46864 5.65852 5.73428 6.03532 6.15286 6.64106 6.71957 7.15964 7.20019 7.33681 8.81476 Molecular weight = 218.08amu Principal moments of inertia in cm(-1) A = 0.038872 B = 0.009314 C = 0.008407 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 720.147567 B = 3005.594633 C = 3329.617920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C 0.031 3.969 3 Si 0.973 3.027 4 H -0.268 1.268 5 H -0.303 1.303 6 H -0.263 1.263 7 C -0.545 4.545 8 H 0.032 0.968 9 C 0.267 3.733 10 H 0.054 0.946 11 O -0.581 6.581 12 C -0.177 4.177 13 C 0.054 3.946 14 N -0.571 5.571 15 H 0.435 0.565 16 C 0.114 3.886 17 C -0.173 4.173 18 C 0.080 3.920 19 N -0.530 5.530 20 C 0.141 3.859 21 C -0.181 4.181 22 H 0.268 0.732 23 H 0.376 0.624 24 H 0.203 0.797 25 H 0.169 0.831 26 H 0.188 0.812 27 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.005 -10.332 -2.079 15.975 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.169 4.169 3 Si 0.800 3.200 4 H -0.194 1.194 5 H -0.232 1.232 6 H -0.187 1.187 7 C -0.583 4.583 8 H 0.050 0.950 9 C 0.208 3.792 10 H 0.071 0.929 11 O -0.389 6.389 12 C -0.185 4.185 13 C -0.071 4.071 14 N -0.176 5.176 15 H 0.276 0.724 16 C -0.002 4.002 17 C -0.196 4.196 18 C -0.069 4.069 19 N -0.241 5.241 20 C -0.022 4.022 21 C -0.189 4.189 22 H 0.077 0.923 23 H 0.225 0.775 24 H 0.220 0.780 25 H 0.186 0.814 26 H 0.205 0.795 27 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 12.076 -9.898 -0.859 15.638 hybrid contribution -0.405 0.142 -1.401 1.465 sum 11.671 -9.757 -2.260 15.379 Atomic orbital electron populations 1.70072 1.08308 1.28438 1.50899 1.25822 0.95255 1.03222 0.92554 0.85308 0.78000 0.77763 0.78920 1.19379 1.23152 1.18741 1.21636 0.91445 0.92943 1.52283 0.94979 1.17908 0.90459 0.85153 0.85647 0.92865 1.86354 1.77226 1.58235 1.17084 1.21202 1.07040 0.98231 0.92010 1.21889 1.01237 0.84015 0.99946 1.41470 1.57604 1.14140 1.04431 0.72368 1.18611 1.00390 0.95774 0.85430 1.21069 1.06801 0.99403 0.92327 1.22641 0.95523 0.94432 0.94348 1.67683 1.15193 1.01710 1.39492 1.22305 0.93965 0.97578 0.88382 1.20313 1.07240 0.96036 0.95267 0.92269 0.77494 0.77983 0.81359 0.79541 0.83813 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.99 13.96 21.45 0.30 -57.69 15 2 C 0.03 1.81 5.47 84.66 0.46 2.27 15 3 Si 0.97 47.15 26.18 68.60 1.80 48.95 15 4 H -0.27 -12.51 7.11 99.48 0.71 -11.80 15 5 H -0.30 -14.56 7.11 99.48 0.71 -13.85 15 6 H -0.26 -12.49 6.54 99.48 0.65 -11.84 15 7 C -0.55 -30.67 9.33 25.60 0.24 -30.43 15 8 H 0.03 2.03 7.98 -2.91 -0.02 2.01 15 9 C 0.27 12.47 2.83 29.10 0.08 12.55 15 10 H 0.05 2.65 7.19 -2.39 -0.02 2.64 15 11 O -0.58 -24.44 10.84 -148.98 -1.61 -26.06 15 12 C -0.18 -7.14 5.38 -18.66 -0.10 -7.24 15 13 C 0.05 1.65 11.16 82.99 0.93 2.57 15 14 N -0.57 -14.40 6.05 -187.48 -1.13 -15.53 15 15 H 0.44 6.85 8.96 -92.71 -0.83 6.02 15 16 C 0.11 3.54 7.35 39.28 0.29 3.83 15 17 C -0.17 -4.33 10.09 22.18 0.22 -4.10 15 18 C 0.08 2.20 11.09 84.26 0.93 3.13 15 19 N -0.53 -18.95 10.34 -195.90 -2.03 -20.98 15 20 C 0.14 5.63 11.28 84.98 0.96 6.59 15 21 C -0.18 -7.13 6.40 -20.22 -0.13 -7.26 15 22 H 0.27 15.53 8.31 -92.71 -0.77 14.76 15 23 H 0.38 13.01 8.09 -74.06 -0.60 12.41 15 24 H 0.20 4.63 7.40 -2.91 -0.02 4.61 15 25 H 0.17 2.64 8.06 -2.91 -0.02 2.62 15 26 H 0.19 3.53 8.06 -2.91 -0.02 3.50 15 27 H 0.14 5.84 8.06 -2.91 -0.02 5.82 15 Total: -1.00 -73.44 240.60 0.94 -72.50 By element: Atomic # 1 Polarization: 17.15 SS G_CDS: -0.27 Total: 16.88 kcal Atomic # 6 Polarization: -21.96 SS G_CDS: 3.89 Total: -18.08 kcal Atomic # 7 Polarization: -91.34 SS G_CDS: -2.86 Total: -94.20 kcal Atomic # 8 Polarization: -24.44 SS G_CDS: -1.61 Total: -26.06 kcal Atomic # 14 Polarization: 47.15 SS G_CDS: 1.80 Total: 48.95 kcal Total: -73.44 0.94 -72.50 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000074279457.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.652 kcal (2) G-P(sol) polarization free energy of solvation -73.442 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.790 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.938 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.504 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds