Wall clock time and date at job start Mon Mar 30 2020 02:26:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.34806 * 126.21906 * 2 1 4 4 H 0.96992 * 125.86356 * 359.97258 * 3 2 1 5 5 N 1.39991 * 108.27401 * 180.24411 * 3 2 1 6 6 C 1.30624 * 108.61022 * 359.75232 * 5 3 2 7 7 C 1.36723 * 126.21370 * 179.82156 * 2 1 3 8 8 C 1.47906 * 126.26729 * 0.02562 * 7 2 1 9 9 C 1.35450 * 125.29107 * 129.42573 * 8 7 2 10 10 C 1.46951 * 105.99551 * 179.86736 * 9 8 7 11 11 C 1.41427 * 127.29373 * 180.11831 * 10 9 8 12 12 H 1.08003 * 120.00325 * 0.30699 * 11 10 9 13 13 C 1.39574 * 119.99821 * 180.31410 * 11 10 9 14 14 N 1.31086 * 120.00450 * 359.97438 * 13 11 10 15 15 Si 1.86810 * 119.99890 * 179.97438 * 13 11 10 16 16 H 1.48500 * 109.46916 * 359.97438 * 15 13 11 17 17 H 1.48499 * 109.46816 * 119.99519 * 15 13 11 18 18 H 1.48495 * 109.46906 * 239.99868 * 15 13 11 19 19 C 1.39191 * 105.40752 * 0.39504 * 10 9 8 20 20 O 1.33890 * 108.14742 * 359.75958 * 19 10 9 21 21 H 1.08998 * 109.47427 * 270.18041 * 1 2 3 22 22 H 1.09007 * 109.46645 * 30.17661 * 1 2 3 23 23 H 1.09002 * 109.47347 * 150.17188 * 1 2 3 24 24 H 1.08000 * 125.96657 * 180.02562 * 6 5 3 25 25 H 1.07992 * 127.00331 * 359.97438 * 9 8 7 26 26 H 0.96996 * 120.00345 * 180.02562 * 14 13 11 27 27 H 1.08001 * 125.92978 * 179.75822 * 19 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3035 1.0876 0.0000 4 1 2.0051 2.0104 -0.0004 5 7 3.6353 0.6563 -0.0057 6 6 3.6505 -0.6499 -0.0037 7 6 2.3147 -1.1031 0.0034 8 6 1.8695 -2.5136 0.0073 9 6 2.3038 -3.4736 -0.8438 10 6 1.5945 -4.7031 -0.4634 11 6 1.7136 -5.9802 -1.0590 12 1 2.3902 -6.1288 -1.8877 13 6 0.9565 -7.0488 -0.5761 14 7 0.1355 -6.8687 0.4299 15 14 1.1132 -8.7356 -1.3633 16 1 2.0990 -8.6747 -2.4723 17 1 1.5717 -9.7158 -0.3463 18 1 -0.2067 -9.1571 -1.8975 19 6 0.7759 -4.3428 0.6032 20 8 0.9654 -3.0412 0.8532 21 1 -0.3634 0.0032 1.0276 22 1 -0.3633 0.8885 -0.5166 23 1 -0.3634 -0.8915 -0.5112 24 1 4.5319 -1.2740 -0.0065 25 1 3.0257 -3.3592 -1.6388 26 1 -0.3903 -7.6114 0.7657 27 1 0.1044 -4.9993 1.1366 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000074279539.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:26:42 Heat of formation + Delta-G solvation = 68.266106 kcal Electronic energy + Delta-G solvation = -13783.510772 eV Core-core repulsion = 11316.033287 eV Total energy + Delta-G solvation = -2467.477485 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 218.080 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.00136 -39.98311 -33.72374 -32.35677 -31.71842 -30.42271 -27.98279 -26.15677 -24.99761 -21.53630 -20.87897 -19.74767 -18.80093 -17.16542 -16.18760 -15.32388 -14.78242 -14.36263 -14.06971 -14.00705 -13.39170 -12.70399 -12.61019 -12.45700 -11.96766 -11.34308 -11.21408 -11.19143 -10.90167 -10.56066 -9.95120 -9.56524 -9.44005 -9.32009 -8.52531 -7.83560 -6.65682 -6.49255 -4.14862 2.00605 2.76639 3.01677 3.07741 3.19098 3.24829 3.63183 4.11508 4.20110 4.70668 4.94589 5.17533 5.26921 5.54720 5.68726 5.91623 6.09469 6.27626 6.33149 6.68244 6.79606 7.12541 7.34154 7.44472 7.66061 7.85927 7.89029 8.14096 8.60476 8.87742 9.13249 9.32283 10.52766 Molecular weight = 218.08amu Principal moments of inertia in cm(-1) A = 0.063077 B = 0.006669 C = 0.006272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 443.795509 B = 4197.657477 C = 4463.348262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C 0.094 3.906 3 N -0.480 5.480 4 H 0.435 0.565 5 N -0.305 5.305 6 C 0.075 3.925 7 C -0.141 4.141 8 C 0.017 3.983 9 C -0.234 4.234 10 C -0.009 4.009 11 C -0.428 4.428 12 H 0.070 0.930 13 C 0.056 3.944 14 N -0.839 5.839 15 Si 0.918 3.082 16 H -0.266 1.266 17 H -0.278 1.278 18 H -0.278 1.278 19 C -0.159 4.159 20 O -0.201 6.201 21 H 0.081 0.919 22 H 0.066 0.934 23 H 0.091 0.909 24 H 0.186 0.814 25 H 0.120 0.880 26 H 0.274 0.726 27 H 0.220 0.780 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.034 9.588 -0.425 9.597 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.035 4.035 3 N -0.188 5.188 4 H 0.278 0.722 5 N -0.127 5.127 6 C -0.112 4.112 7 C -0.152 4.152 8 C -0.034 4.034 9 C -0.255 4.255 10 C -0.011 4.011 11 C -0.460 4.460 12 H 0.089 0.911 13 C -0.153 4.153 14 N -0.471 5.471 15 Si 0.745 3.255 16 H -0.190 1.190 17 H -0.203 1.203 18 H -0.203 1.203 19 C -0.226 4.226 20 O -0.100 6.100 21 H 0.100 0.900 22 H 0.085 0.915 23 H 0.110 0.890 24 H 0.203 0.797 25 H 0.138 0.862 26 H 0.085 0.915 27 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges 0.412 10.632 -0.100 10.640 hybrid contribution -0.433 -1.294 -0.504 1.455 sum -0.021 9.338 -0.604 9.358 Atomic orbital electron populations 1.20428 0.86907 1.03799 1.03543 1.21247 0.94556 0.87157 1.00497 1.45981 1.04191 1.07865 1.60805 0.72185 1.77114 0.96440 1.13149 1.25973 1.23973 0.97531 0.91402 0.98297 1.17730 0.91818 0.89679 1.16008 1.18751 0.98220 0.90335 0.96058 1.22605 1.06278 0.93758 1.02867 1.19197 0.94791 0.92222 0.94882 1.18800 1.20737 0.92007 1.14490 0.91135 1.25626 0.94327 1.00686 0.94635 1.69360 1.22347 1.32635 1.22795 0.86085 0.78548 0.81424 0.79492 1.18976 1.20321 1.20346 1.25711 1.11075 0.79203 1.06651 1.83602 1.50358 1.25988 1.50093 0.90043 0.91544 0.88976 0.79675 0.86165 0.91500 0.76406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.15 10.23 36.00 0.37 -0.78 15 2 C 0.09 1.50 7.26 -81.84 -0.59 0.90 15 3 N -0.48 -6.69 7.33 33.70 0.25 -6.44 15 4 H 0.43 4.28 8.96 -182.69 -1.64 2.64 15 5 N -0.31 -4.97 12.66 30.84 0.39 -4.58 15 6 C 0.07 1.29 12.01 -17.00 -0.20 1.08 15 7 C -0.14 -2.72 5.96 -105.42 -0.63 -3.34 15 8 C 0.02 0.40 6.60 -36.62 -0.24 0.15 15 9 C -0.23 -5.81 11.05 -37.05 -0.41 -6.22 15 10 C -0.01 -0.24 6.13 -104.80 -0.64 -0.89 15 11 C -0.43 -11.95 9.45 -37.87 -0.36 -12.31 15 12 H 0.07 1.90 7.84 -52.48 -0.41 1.49 15 13 C 0.06 1.49 5.49 -17.37 -0.10 1.39 15 14 N -0.84 -22.47 10.40 55.53 0.58 -21.89 15 15 Si 0.92 19.88 29.56 -169.99 -5.02 14.86 15 16 H -0.27 -5.68 7.11 56.52 0.40 -5.28 15 17 H -0.28 -5.91 7.11 56.52 0.40 -5.51 15 18 H -0.28 -5.91 7.11 56.52 0.40 -5.50 15 19 C -0.16 -4.34 11.14 31.09 0.35 -3.99 15 20 O -0.20 -5.05 10.54 6.04 0.06 -4.99 15 21 H 0.08 0.99 8.14 -51.93 -0.42 0.57 15 22 H 0.07 0.64 8.14 -51.92 -0.42 0.22 15 23 H 0.09 1.39 7.92 -51.93 -0.41 0.98 15 24 H 0.19 2.78 8.06 -52.49 -0.42 2.36 15 25 H 0.12 2.73 8.06 -52.49 -0.42 2.31 15 26 H 0.27 6.71 8.30 -40.82 -0.34 6.37 15 27 H 0.22 6.04 5.80 -52.49 -0.30 5.74 15 LS Contribution 248.35 15.07 3.74 3.74 Total: -1.00 -30.86 248.35 -6.05 -36.91 By element: Atomic # 1 Polarization: 9.97 SS G_CDS: -3.59 Total: 6.38 kcal Atomic # 6 Polarization: -21.53 SS G_CDS: -2.46 Total: -23.99 kcal Atomic # 7 Polarization: -34.13 SS G_CDS: 1.21 Total: -32.91 kcal Atomic # 8 Polarization: -5.05 SS G_CDS: 0.06 Total: -4.99 kcal Atomic # 14 Polarization: 19.88 SS G_CDS: -5.02 Total: 14.86 kcal Total LS contribution 3.74 Total: 3.74 kcal Total: -30.86 -6.05 -36.91 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000074279539.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.178 kcal (2) G-P(sol) polarization free energy of solvation -30.860 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.319 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.912 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.266 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds