Wall clock time and date at job start Mon Mar 30 2020 02:24:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 119.99849 * 2 1 4 4 H 1.48507 * 109.47273 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47188 * 300.00526 * 3 2 1 6 6 H 1.48498 * 109.47112 * 60.00401 * 3 2 1 7 7 C 1.37881 * 120.00266 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00043 * 179.97438 * 7 2 1 9 9 C 1.50695 * 119.99900 * 359.97438 * 7 2 1 10 10 S 1.81394 * 109.47428 * 180.02562 * 9 7 2 11 11 O 1.42107 * 109.47099 * 296.39229 * 10 9 7 12 12 C 1.81396 * 103.00481 * 179.97438 * 10 9 7 13 13 C 1.53179 * 109.54291 * 55.17873 * 12 10 9 14 14 C 1.53280 * 109.06328 * 176.85410 * 13 12 10 15 15 O 1.42901 * 109.46155 * 302.44168 * 14 13 12 16 16 C 1.42903 * 114.09356 * 61.15994 * 15 14 13 17 17 C 1.53091 * 109.41633 * 298.84001 * 16 15 14 18 18 H 0.96991 * 120.00120 * 359.97438 * 1 2 3 19 19 H 1.09005 * 109.47353 * 59.99572 * 9 7 2 20 20 H 1.09006 * 109.47264 * 300.00260 * 9 7 2 21 21 H 1.09002 * 109.54198 * 295.00090 * 12 10 9 22 22 H 1.09006 * 109.52033 * 296.84513 * 13 12 10 23 23 H 1.09002 * 109.52377 * 57.02583 * 13 12 10 24 24 H 1.09007 * 109.45633 * 182.44534 * 14 13 12 25 25 H 1.09003 * 109.46692 * 62.44798 * 14 13 12 26 26 H 1.09000 * 109.47917 * 178.85973 * 16 15 14 27 27 H 1.09000 * 109.49157 * 58.82974 * 16 15 14 28 28 H 1.09004 * 109.52607 * 297.70481 * 17 16 15 29 29 H 1.08999 * 109.57497 * 177.54830 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3465 -0.0006 5 1 1.8902 2.3965 -1.2124 6 1 1.8904 2.3964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2512 -2.4991 -0.0005 10 16 2.4299 -3.8779 -0.0005 11 8 3.1904 -3.8509 -1.2007 12 6 1.3517 -5.3367 0.0003 13 6 0.3839 -5.2592 -1.1845 14 6 -0.4679 -6.5330 -1.2193 15 8 0.3866 -7.6748 -1.3099 16 6 1.2812 -7.8231 -0.2054 17 6 2.2032 -6.6033 -0.1299 18 1 -0.4850 0.8400 0.0004 19 1 0.6241 -2.5567 -0.8903 20 1 0.6248 -2.5571 0.8897 21 1 0.7862 -5.3716 0.9314 22 1 -0.2627 -4.3890 -1.0703 23 1 0.9498 -5.1742 -2.1122 24 1 -1.1291 -6.5042 -2.0855 25 1 -1.0640 -6.5964 -0.3089 26 1 1.8801 -8.7236 -0.3411 27 1 0.7082 -7.9033 0.7184 28 1 2.8058 -6.5455 -1.0364 29 1 2.8574 -6.6931 0.7372 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082789611.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:10 Heat of formation + Delta-G solvation = -100.934889 kcal Electronic energy + Delta-G solvation = -13085.770312 eV Core-core repulsion = 10714.106922 eV Total energy + Delta-G solvation = -2371.663390 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 218.076 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -38.94776 -34.64014 -33.42420 -33.14889 -31.00156 -28.60030 -24.99540 -23.70833 -22.78062 -20.12080 -17.05565 -16.46036 -15.95422 -15.85981 -14.97927 -14.67912 -14.47771 -13.85250 -13.27109 -13.13943 -12.75790 -12.25631 -12.08264 -11.57081 -11.18718 -11.10626 -10.95212 -10.70145 -10.55303 -10.37081 -10.28079 -9.69767 -9.55287 -8.62876 -8.58946 -7.17988 -6.19983 -4.26109 2.49853 3.23480 3.31348 3.37323 3.74510 4.00565 4.33139 4.68756 4.87229 5.07906 5.16691 5.19382 5.36341 5.37397 5.60630 5.63716 5.75345 5.89145 5.97976 6.18301 6.26637 6.46483 7.01315 7.09899 7.29938 7.67485 7.99819 8.78248 9.38856 10.91983 Molecular weight = 218.08amu Principal moments of inertia in cm(-1) A = 0.059071 B = 0.007512 C = 0.006964 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 473.895167 B = 3726.262828 C = 4019.813262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.068 3.932 3 Si 0.899 3.101 4 H -0.268 1.268 5 H -0.282 1.282 6 H -0.280 1.280 7 C -0.514 4.514 8 H 0.064 0.936 9 C -0.252 4.252 10 S 1.200 4.800 11 O -0.863 6.863 12 C -0.422 4.422 13 C -0.149 4.149 14 C 0.066 3.934 15 O -0.388 6.388 16 C 0.066 3.934 17 C -0.129 4.129 18 H 0.264 0.736 19 H 0.042 0.958 20 H 0.071 0.929 21 H 0.113 0.887 22 H 0.083 0.917 23 H 0.070 0.930 24 H 0.089 0.911 25 H 0.050 0.950 26 H 0.090 0.910 27 H 0.049 0.951 28 H 0.073 0.927 29 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.604 -11.501 4.672 12.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.137 4.137 3 Si 0.726 3.274 4 H -0.193 1.193 5 H -0.208 1.208 6 H -0.206 1.206 7 C -0.554 4.554 8 H 0.082 0.918 9 C -0.393 4.393 10 S 1.402 4.598 11 O -0.858 6.858 12 C -0.536 4.536 13 C -0.187 4.187 14 C -0.011 4.011 15 O -0.307 6.307 16 C -0.012 4.012 17 C -0.168 4.168 18 H 0.073 0.927 19 H 0.060 0.940 20 H 0.089 0.911 21 H 0.131 0.869 22 H 0.101 0.899 23 H 0.089 0.911 24 H 0.107 0.893 25 H 0.068 0.932 26 H 0.108 0.892 27 H 0.068 0.932 28 H 0.091 0.909 29 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 1.461 -11.536 4.499 12.468 hybrid contribution -1.154 1.209 -1.563 2.289 sum 0.307 -10.327 2.936 10.741 Atomic orbital electron populations 1.69967 1.06214 1.27034 1.49293 1.24977 0.94921 0.99419 0.94336 0.86406 0.80312 0.82859 0.77796 1.19266 1.20822 1.20567 1.20512 0.92826 0.89104 1.52926 0.91751 1.24892 1.05941 1.05537 1.02883 1.69643 0.90367 0.86714 1.13122 1.93017 1.57147 1.84396 1.51279 1.27774 1.09093 1.14059 1.02687 1.22246 0.98880 0.99150 0.98437 1.22572 0.91765 0.85261 1.01522 1.87878 1.51852 1.45910 1.45049 1.22531 0.91548 0.97679 0.89460 1.21814 0.98019 0.93645 1.03276 0.92689 0.93970 0.91138 0.86879 0.89888 0.91115 0.89333 0.93180 0.89234 0.93228 0.90864 0.90134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.70 13.29 55.43 0.74 -24.96 15 2 C 0.07 1.89 5.46 -17.82 -0.10 1.79 15 3 Si 0.90 21.25 29.54 -169.99 -5.02 16.23 15 4 H -0.27 -6.23 7.11 56.52 0.40 -5.83 15 5 H -0.28 -6.69 7.11 56.52 0.40 -6.29 15 6 H -0.28 -6.39 7.11 56.52 0.40 -5.99 15 7 C -0.51 -14.19 9.13 -34.44 -0.31 -14.50 15 8 H 0.06 1.75 7.71 -52.49 -0.40 1.34 15 9 C -0.25 -6.08 5.10 36.00 0.18 -5.89 15 10 S 1.20 22.99 12.60 -107.50 -1.35 21.64 15 11 O -0.86 -21.72 18.13 -35.23 -0.64 -22.36 15 12 C -0.42 -6.58 2.79 -26.55 -0.07 -6.66 15 13 C -0.15 -2.55 5.11 -26.49 -0.14 -2.69 15 14 C 0.07 0.97 6.85 37.30 0.26 1.22 15 15 O -0.39 -6.01 10.77 -35.23 -0.38 -6.38 15 16 C 0.07 0.83 6.84 37.20 0.25 1.08 15 17 C -0.13 -1.79 5.42 -26.59 -0.14 -1.94 15 18 H 0.26 7.16 8.31 -40.82 -0.34 6.82 15 19 H 0.04 1.12 6.99 -51.92 -0.36 0.76 15 20 H 0.07 1.64 8.14 -51.92 -0.42 1.21 15 21 H 0.11 1.48 8.14 -51.92 -0.42 1.05 15 22 H 0.08 1.48 6.72 -51.93 -0.35 1.13 15 23 H 0.07 1.39 8.14 -51.93 -0.42 0.97 15 24 H 0.09 1.18 8.14 -51.92 -0.42 0.76 15 25 H 0.05 0.65 8.14 -51.93 -0.42 0.22 15 26 H 0.09 0.95 8.14 -51.93 -0.42 0.53 15 27 H 0.05 0.54 8.14 -51.93 -0.42 0.12 15 28 H 0.07 1.19 8.14 -51.93 -0.42 0.77 15 29 H 0.08 0.87 8.14 -51.93 -0.42 0.45 15 LS Contribution 255.34 15.07 3.85 3.85 Total: -1.00 -34.61 255.34 -6.94 -41.54 By element: Atomic # 1 Polarization: 2.09 SS G_CDS: -4.06 Total: -1.96 kcal Atomic # 6 Polarization: -27.51 SS G_CDS: -0.07 Total: -27.58 kcal Atomic # 7 Polarization: -25.70 SS G_CDS: 0.74 Total: -24.96 kcal Atomic # 8 Polarization: -27.73 SS G_CDS: -1.02 Total: -28.75 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Atomic # 16 Polarization: 22.99 SS G_CDS: -1.35 Total: 21.64 kcal Total LS contribution 3.85 Total: 3.85 kcal Total: -34.61 -6.94 -41.54 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082789611.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.392 kcal (2) G-P(sol) polarization free energy of solvation -34.606 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.937 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.542 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds