Wall clock time and date at job start Mon Mar 30 2020 02:24:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 119.99849 * 2 1 4 4 H 1.48507 * 109.47273 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47188 * 300.00526 * 3 2 1 6 6 H 1.48498 * 109.47112 * 60.00401 * 3 2 1 7 7 C 1.37881 * 120.00266 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00043 * 179.97438 * 7 2 1 9 9 C 1.50695 * 119.99900 * 359.97438 * 7 2 1 10 10 S 1.81394 * 109.47428 * 180.02562 * 9 7 2 11 11 O 1.42107 * 109.47099 * 296.39229 * 10 9 7 12 12 C 1.81396 * 103.00481 * 179.97438 * 10 9 7 13 13 C 1.53179 * 109.54291 * 55.17873 * 12 10 9 14 14 C 1.53280 * 109.06328 * 176.85410 * 13 12 10 15 15 O 1.42901 * 109.46155 * 302.44168 * 14 13 12 16 16 C 1.42903 * 114.09356 * 61.15994 * 15 14 13 17 17 C 1.53091 * 109.41633 * 298.84001 * 16 15 14 18 18 H 0.96991 * 120.00120 * 359.97438 * 1 2 3 19 19 H 1.09005 * 109.47353 * 59.99572 * 9 7 2 20 20 H 1.09006 * 109.47264 * 300.00260 * 9 7 2 21 21 H 1.09002 * 109.54198 * 295.00090 * 12 10 9 22 22 H 1.09006 * 109.52033 * 296.84513 * 13 12 10 23 23 H 1.09002 * 109.52377 * 57.02583 * 13 12 10 24 24 H 1.09007 * 109.45633 * 182.44534 * 14 13 12 25 25 H 1.09003 * 109.46692 * 62.44798 * 14 13 12 26 26 H 1.09000 * 109.47917 * 178.85973 * 16 15 14 27 27 H 1.09000 * 109.49157 * 58.82974 * 16 15 14 28 28 H 1.09004 * 109.52607 * 297.70481 * 17 16 15 29 29 H 1.08999 * 109.57497 * 177.54830 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3465 -0.0006 5 1 1.8902 2.3965 -1.2124 6 1 1.8904 2.3964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2512 -2.4991 -0.0005 10 16 2.4299 -3.8779 -0.0005 11 8 3.1904 -3.8509 -1.2007 12 6 1.3517 -5.3367 0.0003 13 6 0.3839 -5.2592 -1.1845 14 6 -0.4679 -6.5330 -1.2193 15 8 0.3866 -7.6748 -1.3099 16 6 1.2812 -7.8231 -0.2054 17 6 2.2032 -6.6033 -0.1299 18 1 -0.4850 0.8400 0.0004 19 1 0.6241 -2.5567 -0.8903 20 1 0.6248 -2.5571 0.8897 21 1 0.7862 -5.3716 0.9314 22 1 -0.2627 -4.3890 -1.0703 23 1 0.9498 -5.1742 -2.1122 24 1 -1.1291 -6.5042 -2.0855 25 1 -1.0640 -6.5964 -0.3089 26 1 1.8801 -8.7236 -0.3411 27 1 0.7082 -7.9033 0.7184 28 1 2.8058 -6.5455 -1.0364 29 1 2.8574 -6.6931 0.7372 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082789611.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:09 Heat of formation + Delta-G solvation = -127.162151 kcal Electronic energy + Delta-G solvation = -13086.907612 eV Core-core repulsion = 10714.106922 eV Total energy + Delta-G solvation = -2372.800690 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 218.076 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.10003 -36.50581 -35.25394 -34.67250 -32.17295 -30.60592 -26.25688 -25.31425 -24.34051 -21.34575 -18.82553 -18.31156 -17.27162 -17.01407 -16.76960 -16.08681 -15.79486 -15.39465 -14.76752 -14.65715 -14.51077 -14.11599 -13.32118 -13.28645 -12.97427 -12.73716 -12.45693 -12.33603 -12.07684 -11.80294 -11.66601 -11.53563 -10.93062 -10.69783 -10.23349 -8.88042 -8.31480 -6.44559 0.91720 1.36987 1.38909 1.52411 2.09605 2.35694 2.94192 3.01052 3.14980 3.64057 3.78445 3.98264 4.20238 4.25282 4.53070 4.54561 4.70390 4.72541 4.77543 4.93786 5.00881 5.07390 5.12378 5.22954 5.54242 5.94174 6.23704 6.69452 7.24378 8.81178 Molecular weight = 218.08amu Principal moments of inertia in cm(-1) A = 0.059071 B = 0.007512 C = 0.006964 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 473.895167 B = 3726.262828 C = 4019.813262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C 0.013 3.987 3 Si 0.962 3.038 4 H -0.262 1.262 5 H -0.284 1.284 6 H -0.263 1.263 7 C -0.539 4.539 8 H 0.061 0.939 9 C -0.265 4.265 10 S 1.266 4.734 11 O -0.926 6.926 12 C -0.411 4.411 13 C -0.154 4.154 14 C 0.071 3.929 15 O -0.408 6.408 16 C 0.061 3.939 17 C -0.132 4.132 18 H 0.267 0.733 19 H 0.005 0.995 20 H 0.077 0.923 21 H 0.155 0.845 22 H 0.068 0.932 23 H 0.032 0.968 24 H 0.095 0.905 25 H 0.077 0.923 26 H 0.113 0.887 27 H 0.079 0.921 28 H 0.041 0.959 29 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.756 -12.756 6.365 14.276 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.187 4.187 3 Si 0.786 3.214 4 H -0.186 1.186 5 H -0.210 1.210 6 H -0.188 1.188 7 C -0.578 4.578 8 H 0.080 0.920 9 C -0.404 4.404 10 S 1.470 4.530 11 O -0.922 6.922 12 C -0.529 4.529 13 C -0.192 4.192 14 C -0.006 4.006 15 O -0.327 6.327 16 C -0.016 4.016 17 C -0.170 4.170 18 H 0.076 0.924 19 H 0.024 0.976 20 H 0.095 0.905 21 H 0.173 0.827 22 H 0.087 0.913 23 H 0.051 0.949 24 H 0.113 0.887 25 H 0.095 0.905 26 H 0.131 0.869 27 H 0.097 0.903 28 H 0.060 0.940 29 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 1.632 -12.749 6.198 14.269 hybrid contribution -1.240 1.442 -2.087 2.824 sum 0.392 -11.306 4.111 12.037 Atomic orbital electron populations 1.70064 1.07637 1.28090 1.50234 1.25881 0.95822 1.03117 0.93910 0.85435 0.79197 0.78560 0.78204 1.18636 1.20969 1.18766 1.20955 0.93099 0.91002 1.52708 0.92048 1.24988 1.06642 1.07439 1.01309 1.68723 0.88361 0.85451 1.10420 1.92897 1.60021 1.85621 1.53690 1.27686 1.08626 1.12484 1.04096 1.22241 0.99132 1.00545 0.97302 1.22578 0.91341 0.83457 1.03268 1.87867 1.52435 1.45690 1.46748 1.22797 0.91373 0.97505 0.89905 1.21938 0.98331 0.93147 1.03610 0.92394 0.97596 0.90508 0.82688 0.91305 0.94878 0.88728 0.90480 0.86939 0.90293 0.93984 0.86206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.26 13.29 21.45 0.28 -53.98 15 2 C 0.01 0.75 5.46 84.66 0.46 1.22 15 3 Si 0.96 43.73 29.54 68.60 2.03 45.75 15 4 H -0.26 -11.55 7.11 99.48 0.71 -10.84 15 5 H -0.28 -12.87 7.11 99.48 0.71 -12.16 15 6 H -0.26 -11.16 7.11 99.48 0.71 -10.45 15 7 C -0.54 -30.29 9.13 25.60 0.23 -30.05 15 8 H 0.06 3.39 7.71 -2.91 -0.02 3.37 15 9 C -0.26 -13.10 5.10 71.23 0.36 -12.73 15 10 S 1.27 48.30 12.60 -56.49 -0.71 47.58 15 11 O -0.93 -47.74 18.13 -148.98 -2.70 -50.44 15 12 C -0.41 -11.99 2.79 30.71 0.09 -11.90 15 13 C -0.15 -5.24 5.11 30.75 0.16 -5.08 15 14 C 0.07 1.93 6.85 72.08 0.49 2.42 15 15 O -0.41 -11.57 10.77 -148.98 -1.60 -13.18 15 16 C 0.06 1.30 6.84 72.01 0.49 1.79 15 17 C -0.13 -3.27 5.42 30.68 0.17 -3.10 15 18 H 0.27 14.69 8.31 -92.72 -0.77 13.92 15 19 H 0.01 0.31 6.99 -2.39 -0.02 0.29 15 20 H 0.08 3.61 8.14 -2.39 -0.02 3.59 15 21 H 0.16 3.36 8.14 -2.39 -0.02 3.34 15 22 H 0.07 2.51 6.72 -2.38 -0.02 2.50 15 23 H 0.03 1.35 8.14 -2.39 -0.02 1.33 15 24 H 0.09 2.41 8.14 -2.38 -0.02 2.39 15 25 H 0.08 1.70 8.14 -2.39 -0.02 1.68 15 26 H 0.11 1.90 8.14 -2.39 -0.02 1.88 15 27 H 0.08 1.27 8.14 -2.39 -0.02 1.25 15 28 H 0.04 1.32 8.14 -2.38 -0.02 1.30 15 29 H 0.12 2.04 8.14 -2.39 -0.02 2.02 15 Total: -1.00 -77.18 255.34 0.87 -76.31 By element: Atomic # 1 Polarization: 4.28 SS G_CDS: 1.12 Total: 5.40 kcal Atomic # 6 Polarization: -59.90 SS G_CDS: 2.45 Total: -57.45 kcal Atomic # 7 Polarization: -54.26 SS G_CDS: 0.28 Total: -53.98 kcal Atomic # 8 Polarization: -59.32 SS G_CDS: -4.30 Total: -63.62 kcal Atomic # 14 Polarization: 43.73 SS G_CDS: 2.03 Total: 45.75 kcal Atomic # 16 Polarization: 48.30 SS G_CDS: -0.71 Total: 47.58 kcal Total: -77.18 0.87 -76.31 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082789611.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.855 kcal (2) G-P(sol) polarization free energy of solvation -77.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.869 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.307 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.162 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds