Wall clock time and date at job start Mon Mar 30 2020 02:35:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 S 1.81404 * 109.46940 * 2 1 4 4 O 1.42104 * 108.57434 * 65.51580 * 3 2 1 5 5 O 1.42092 * 108.58185 * 294.49032 * 3 2 1 6 6 C 1.81402 * 101.91963 * 179.97438 * 3 2 1 7 7 C 1.53002 * 109.46938 * 185.05637 * 6 3 2 8 8 C 1.50699 * 115.55285 * 297.01765 * 7 6 3 9 9 H 1.07994 * 120.00085 * 95.18879 * 8 7 6 10 10 C 1.37879 * 119.99667 * 274.91237 * 8 7 6 11 11 N 1.31512 * 120.00172 * 355.59791 * 10 8 7 12 12 Si 1.86801 * 119.99588 * 175.60013 * 10 8 7 13 13 H 1.48499 * 109.47104 * 90.00250 * 12 10 8 14 14 H 1.48502 * 109.46649 * 209.99637 * 12 10 8 15 15 H 1.48489 * 109.47390 * 329.99718 * 12 10 8 16 16 C 1.53003 * 117.49359 * 82.68779 * 7 6 3 17 17 C 1.52996 * 117.49534 * 151.34194 * 7 6 3 18 18 H 1.08994 * 109.47448 * 59.99669 * 1 2 3 19 19 H 1.09000 * 109.47056 * 180.02562 * 1 2 3 20 20 H 1.09004 * 109.47007 * 299.99273 * 1 2 3 21 21 H 1.09004 * 109.47007 * 240.00727 * 2 1 3 22 22 H 1.08994 * 109.47448 * 120.00331 * 2 1 3 23 23 H 1.09000 * 109.46860 * 65.06249 * 6 3 2 24 24 H 1.08993 * 109.47621 * 305.06069 * 6 3 2 25 25 H 0.97001 * 120.00300 * 185.00582 * 11 10 8 26 26 H 1.09001 * 117.49495 * 214.99927 * 16 7 6 27 27 H 1.09004 * 117.50353 * 0.02562 * 16 7 6 28 28 H 1.09006 * 117.50375 * 359.97438 * 17 7 6 29 29 H 1.09005 * 117.49836 * 144.97669 * 17 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1346 1.7103 0.0000 4 8 1.7592 2.3232 1.2259 5 8 1.7592 2.3233 -1.2257 6 6 3.9329 1.4720 0.0008 7 6 4.6272 2.8295 0.1280 8 6 4.3864 3.7916 -1.0066 9 1 3.6047 4.5327 -0.9294 10 6 5.1679 3.7294 -2.1408 11 7 6.1781 2.8893 -2.1980 12 14 4.7916 4.8384 -3.5961 13 1 5.5384 6.1139 -3.4525 14 1 5.2034 4.1626 -4.8527 15 1 3.3344 5.1201 -3.6401 16 6 4.7776 3.4170 1.5327 17 6 6.0010 2.8599 0.8006 18 1 -0.3634 0.5138 -0.8899 19 1 -0.3633 -1.0277 0.0005 20 1 -0.3633 0.5137 0.8901 21 1 1.8933 -0.5137 -0.8901 22 1 1.8934 -0.5138 0.8899 23 1 4.2365 0.9946 -0.9309 24 1 4.2153 0.8392 0.8421 25 1 6.7715 2.8959 -2.9653 26 1 4.7025 4.4995 1.6361 27 1 4.3824 2.8363 2.3662 28 1 6.4101 1.9129 1.1529 29 1 6.7310 3.5756 0.4222 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000083862533.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:54 Heat of formation + Delta-G solvation = -77.661090 kcal Electronic energy + Delta-G solvation = -13521.549667 eV Core-core repulsion = 11150.895505 eV Total energy + Delta-G solvation = -2370.654162 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 218.076 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -38.51848 -37.67673 -36.71040 -34.04913 -33.93002 -29.90197 -27.50799 -24.78180 -22.92805 -21.23154 -19.59811 -18.33054 -17.44780 -16.98286 -16.64885 -16.37332 -15.55534 -15.14134 -14.86577 -14.01672 -13.73918 -13.57047 -13.31611 -13.06095 -12.83846 -12.78658 -12.73296 -12.41067 -12.33097 -12.14119 -11.80738 -11.53251 -11.15534 -10.93577 -10.47053 -9.84102 -8.16341 -6.30596 -0.69444 1.36359 1.39523 1.52856 2.20700 2.41375 2.97463 3.10657 3.33466 3.45656 3.85244 3.97811 4.09352 4.37176 4.45243 4.57693 4.63052 4.78657 4.86117 4.90017 5.01911 5.12035 5.25795 5.50325 5.65544 5.74834 6.27253 6.75148 7.40911 8.89861 Molecular weight = 218.08amu Principal moments of inertia in cm(-1) A = 0.032307 B = 0.012390 C = 0.010302 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 866.483157 B = 2259.297487 C = 2717.358544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.601 4.601 3 S 2.409 3.591 4 O -0.983 6.983 5 O -0.981 6.981 6 C -0.548 4.548 7 C 0.007 3.993 8 C -0.524 4.524 9 H 0.044 0.956 10 C 0.039 3.961 11 N -0.896 5.896 12 Si 0.933 3.067 13 H -0.270 1.270 14 H -0.273 1.273 15 H -0.278 1.278 16 C -0.195 4.195 17 C -0.136 4.136 18 H 0.063 0.937 19 H 0.109 0.891 20 H 0.070 0.930 21 H 0.152 0.848 22 H 0.162 0.838 23 H 0.123 0.877 24 H 0.140 0.860 25 H 0.264 0.736 26 H 0.074 0.926 27 H 0.100 0.900 28 H 0.088 0.912 29 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.934 -8.803 4.375 11.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.732 4.732 3 S 2.597 3.403 4 O -0.980 6.980 5 O -0.979 6.979 6 C -0.678 4.678 7 C 0.006 3.994 8 C -0.561 4.561 9 H 0.062 0.938 10 C -0.163 4.163 11 N -0.533 5.533 12 Si 0.759 3.241 13 H -0.195 1.195 14 H -0.198 1.198 15 H -0.203 1.203 16 C -0.232 4.232 17 C -0.175 4.175 18 H 0.082 0.918 19 H 0.128 0.872 20 H 0.089 0.911 21 H 0.170 0.830 22 H 0.180 0.820 23 H 0.141 0.859 24 H 0.158 0.842 25 H 0.073 0.927 26 H 0.093 0.907 27 H 0.119 0.881 28 H 0.107 0.893 29 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -6.334 -8.110 4.213 11.119 hybrid contribution 0.608 0.150 -0.976 1.159 sum -5.726 -7.961 3.237 10.326 Atomic orbital electron populations 1.21678 0.90280 1.06235 1.03353 1.30129 1.07517 1.21692 1.13907 1.08082 0.78712 0.79606 0.73881 1.93439 1.82433 1.75526 1.46628 1.93480 1.82219 1.75256 1.46898 1.29694 1.22111 1.05523 1.10514 1.18443 0.98424 0.91322 0.91225 1.20694 1.18101 1.17007 1.00324 0.93810 1.25492 0.94687 0.96266 0.99834 1.70042 1.15503 1.36697 1.31060 0.85920 0.78587 0.79613 0.79992 1.19550 1.19790 1.20295 1.23187 1.04182 1.00124 0.95731 1.22464 0.91156 1.00918 1.02914 0.91765 0.87191 0.91087 0.83027 0.82020 0.85912 0.84203 0.92667 0.90690 0.88125 0.89328 0.91839 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.32 9.92 71.98 0.71 -2.61 15 2 C -0.60 -13.54 6.53 71.98 0.47 -13.07 15 3 S 2.41 90.16 4.52 -56.49 -0.26 89.91 15 4 O -0.98 -41.29 18.08 -127.37 -2.30 -43.59 15 5 O -0.98 -46.55 17.29 -127.37 -2.20 -48.75 15 6 C -0.55 -21.45 5.67 71.98 0.41 -21.05 15 7 C 0.01 0.36 1.43 -52.93 -0.08 0.28 15 8 C -0.52 -29.81 7.74 25.60 0.20 -29.61 15 9 H 0.04 2.62 7.82 -2.91 -0.02 2.60 15 10 C 0.04 2.20 5.43 84.66 0.46 2.66 15 11 N -0.90 -50.17 12.65 21.45 0.27 -49.90 15 12 Si 0.93 45.27 29.54 68.60 2.03 47.30 15 13 H -0.27 -12.55 7.11 99.48 0.71 -11.84 15 14 H -0.27 -12.62 7.11 99.48 0.71 -11.91 15 15 H -0.28 -13.95 7.11 99.48 0.71 -13.24 15 16 C -0.20 -8.57 9.96 30.62 0.30 -8.27 15 17 C -0.14 -6.20 9.15 30.62 0.28 -5.92 15 18 H 0.06 1.46 8.14 -2.39 -0.02 1.44 15 19 H 0.11 1.58 8.14 -2.39 -0.02 1.56 15 20 H 0.07 1.50 8.14 -2.39 -0.02 1.48 15 21 H 0.15 2.80 8.14 -2.39 -0.02 2.78 15 22 H 0.16 2.51 8.14 -2.39 -0.02 2.50 15 23 H 0.12 4.93 8.14 -2.39 -0.02 4.91 15 24 H 0.14 4.15 8.10 -2.39 -0.02 4.13 15 25 H 0.26 14.03 8.32 -92.71 -0.77 13.26 15 26 H 0.07 3.38 8.14 -2.39 -0.02 3.36 15 27 H 0.10 3.83 8.14 -2.39 -0.02 3.81 15 28 H 0.09 3.55 8.14 -2.38 -0.02 3.53 15 29 H 0.06 3.18 8.14 -2.38 -0.02 3.16 15 Total: -1.00 -72.51 264.90 1.41 -71.10 By element: Atomic # 1 Polarization: 10.40 SS G_CDS: 1.11 Total: 11.52 kcal Atomic # 6 Polarization: -80.34 SS G_CDS: 2.76 Total: -77.58 kcal Atomic # 7 Polarization: -50.17 SS G_CDS: 0.27 Total: -49.90 kcal Atomic # 8 Polarization: -87.83 SS G_CDS: -4.51 Total: -92.34 kcal Atomic # 14 Polarization: 45.27 SS G_CDS: 2.03 Total: 47.30 kcal Atomic # 16 Polarization: 90.16 SS G_CDS: -0.26 Total: 89.91 kcal Total: -72.51 1.41 -71.10 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083862533.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.560 kcal (2) G-P(sol) polarization free energy of solvation -72.510 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.070 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.408 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.101 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds