Wall clock time and date at job start Mon Mar 30 2020 02:38:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35884 * 116.99917 * 2 1 4 4 C 1.39247 * 119.77339 * 0.02562 * 3 2 1 5 5 C 1.36669 * 120.47496 * 180.02562 * 4 3 2 6 6 C 1.39395 * 119.91753 * 359.97438 * 5 4 3 7 7 C 1.47336 * 133.66699 * 179.97438 * 6 5 4 8 8 C 1.40760 * 126.35200 * 0.02562 * 7 6 5 9 9 H 1.07995 * 120.00541 * 8.20253 * 8 7 6 10 10 C 1.39957 * 119.99318 * 188.20911 * 8 7 6 11 11 N 1.30868 * 119.99739 * 191.30372 * 10 8 7 12 12 Si 1.86796 * 120.00453 * 11.29890 * 10 8 7 13 13 H 1.48499 * 109.47363 * 270.00588 * 12 10 8 14 14 H 1.48501 * 109.46914 * 30.00458 * 12 10 8 15 15 H 1.48493 * 109.47270 * 150.00291 * 12 10 8 16 16 N 1.32642 * 107.28784 * 180.28565 * 7 6 5 17 17 N 1.39834 * 109.70886 * 359.58186 * 16 7 6 18 18 H 0.96998 * 125.26479 * 180.15487 * 17 16 7 19 19 C 1.37484 * 109.46064 * 0.43428 * 17 16 7 20 20 C 1.38299 * 119.77475 * 179.97438 * 3 2 1 21 21 H 1.08996 * 109.47431 * 299.99729 * 1 2 3 22 22 H 1.09001 * 109.47598 * 60.00289 * 1 2 3 23 23 H 1.09000 * 109.46724 * 180.02562 * 1 2 3 24 24 H 1.08000 * 119.75890 * 359.97438 * 4 3 2 25 25 H 1.08004 * 120.03679 * 179.97438 * 5 4 3 26 26 H 0.97004 * 119.99742 * 354.77008 * 11 10 8 27 27 H 1.07992 * 120.15330 * 359.97438 * 20 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2107 0.0000 4 6 1.2828 2.3755 0.0005 5 6 1.8883 3.6008 0.0000 6 6 3.2795 3.6888 -0.0005 7 6 4.2275 4.8167 -0.0016 8 6 3.8965 6.1848 -0.0019 9 1 2.8699 6.4921 0.1321 10 6 4.8979 7.1469 -0.1761 11 7 4.6363 8.4105 0.0419 12 14 6.6079 6.6274 -0.7195 13 1 7.4403 6.3373 0.4756 14 1 6.5105 5.4088 -1.5626 15 1 7.2323 7.7231 -1.5035 16 7 5.4506 4.3036 -0.0080 17 7 5.3762 2.9072 -0.0016 18 1 6.1373 2.3059 -0.0022 19 6 4.0574 2.5188 -0.0006 20 6 3.4272 1.2777 0.0005 21 1 -0.3634 0.5138 0.8900 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 0.2048 2.3102 0.0005 25 1 1.2896 4.4997 0.0000 26 1 3.7308 8.6894 0.2501 27 1 4.0143 0.3713 0.0014 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000089195946.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:49 Heat of formation + Delta-G solvation = 5.709739 kcal Electronic energy + Delta-G solvation = -13942.269198 eV Core-core repulsion = 11472.079066 eV Total energy + Delta-G solvation = -2470.190132 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 218.080 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.69683 -40.04841 -36.65940 -35.70624 -33.15493 -30.82531 -29.83942 -27.88898 -27.27268 -23.86985 -22.70724 -21.59439 -19.67925 -18.95952 -17.92117 -17.17133 -16.58918 -16.41227 -15.70770 -15.40074 -15.12948 -14.58047 -14.31567 -14.12214 -13.36328 -13.13163 -12.90698 -12.69512 -12.27483 -11.80657 -11.62546 -11.55211 -11.26227 -10.74162 -10.37654 -9.34141 -8.96023 -8.89691 -6.70479 0.25435 0.71502 1.41574 1.48472 1.88647 1.99681 2.16171 2.39134 2.81043 2.86120 3.30418 3.84441 4.15273 4.20771 4.29748 4.48295 4.49879 4.59266 4.65955 4.79964 5.08403 5.29863 5.31760 5.48521 5.58552 5.75582 6.07727 6.34216 6.52430 6.65962 6.98453 7.41219 8.04227 Molecular weight = 218.08amu Principal moments of inertia in cm(-1) A = 0.055734 B = 0.008187 C = 0.007220 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 502.263477 B = 3419.091867 C = 3877.165836 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.328 6.328 3 C 0.171 3.829 4 C -0.256 4.256 5 C -0.005 4.005 6 C -0.249 4.249 7 C 0.213 3.787 8 C -0.502 4.502 9 H 0.072 0.928 10 C 0.024 3.976 11 N -0.838 5.838 12 Si 1.135 2.865 13 H -0.283 1.283 14 H -0.260 1.260 15 H -0.297 1.297 16 N -0.431 5.431 17 N -0.527 5.527 18 H 0.436 0.564 19 C 0.168 3.832 20 C -0.217 4.217 21 H 0.064 0.936 22 H 0.064 0.936 23 H 0.124 0.876 24 H 0.157 0.843 25 H 0.125 0.875 26 H 0.282 0.718 27 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.029 -13.459 -0.787 15.204 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.242 6.242 3 C 0.123 3.877 4 C -0.277 4.277 5 C -0.025 4.025 6 C -0.257 4.257 7 C 0.057 3.943 8 C -0.542 4.542 9 H 0.090 0.910 10 C -0.192 4.192 11 N -0.465 5.465 12 Si 0.961 3.039 13 H -0.209 1.209 14 H -0.186 1.186 15 H -0.226 1.226 16 N -0.260 5.260 17 N -0.237 5.237 18 H 0.279 0.721 19 C 0.048 3.952 20 C -0.241 4.241 21 H 0.082 0.918 22 H 0.083 0.917 23 H 0.142 0.858 24 H 0.174 0.826 25 H 0.143 0.857 26 H 0.093 0.907 27 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -4.286 -12.802 -1.050 13.541 hybrid contribution -2.322 -0.444 0.511 2.418 sum -6.607 -13.246 -0.539 14.812 Atomic orbital electron populations 1.23377 0.76253 1.05626 1.02377 1.85995 1.23628 1.26101 1.88443 1.18558 0.91140 0.84563 0.93413 1.20822 1.00897 0.90788 1.15173 1.20213 0.91689 0.98123 0.92492 1.20276 0.95202 0.92791 1.17419 1.20615 0.88891 0.93466 0.91282 1.19801 0.97208 0.89109 1.48055 0.90974 1.28077 1.08748 0.92400 0.90022 1.70662 1.24308 1.17804 1.33702 0.82522 0.69634 0.73724 0.78060 1.20904 1.18593 1.22586 1.76803 1.19443 0.87582 1.42132 1.45644 1.03881 1.04564 1.69659 0.72067 1.18649 0.86289 0.94085 0.96171 1.19039 0.92176 0.94645 1.18265 0.91782 0.91749 0.85806 0.82590 0.85682 0.90740 0.84054 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.30 9.80 113.37 1.11 1.41 15 2 O -0.33 -8.76 10.49 -92.24 -0.97 -9.73 15 3 C 0.17 5.54 6.68 22.53 0.15 5.69 15 4 C -0.26 -8.17 8.97 22.15 0.20 -7.98 15 5 C -0.01 -0.20 10.03 22.18 0.22 0.02 15 6 C -0.25 -11.76 6.30 -20.05 -0.13 -11.89 15 7 C 0.21 11.50 6.61 42.03 0.28 11.78 15 8 C -0.50 -28.29 9.81 23.30 0.23 -28.06 15 9 H 0.07 4.07 8.06 -2.91 -0.02 4.05 15 10 C 0.02 1.37 5.52 85.25 0.47 1.84 15 11 N -0.84 -46.97 13.66 21.83 0.30 -46.67 15 12 Si 1.13 55.47 26.40 68.60 1.81 57.28 15 13 H -0.28 -13.76 7.11 99.48 0.71 -13.05 15 14 H -0.26 -12.86 6.25 99.48 0.62 -12.24 15 15 H -0.30 -13.75 7.11 99.48 0.71 -13.05 15 16 N -0.43 -22.43 7.85 -48.51 -0.38 -22.81 15 17 N -0.53 -23.02 7.36 -51.53 -0.38 -23.40 15 18 H 0.44 15.37 8.96 -213.49 -1.91 13.45 15 19 C 0.17 7.18 7.30 39.04 0.29 7.47 15 20 C -0.22 -7.72 10.02 22.51 0.23 -7.49 15 21 H 0.06 0.97 7.64 -2.39 -0.02 0.95 15 22 H 0.06 0.97 7.65 -2.39 -0.02 0.95 15 23 H 0.12 1.33 8.14 -2.39 -0.02 1.31 15 24 H 0.16 3.73 6.25 -2.91 -0.02 3.71 15 25 H 0.13 4.64 8.06 -2.91 -0.02 4.62 15 26 H 0.28 15.25 8.73 -92.71 -0.81 14.44 15 27 H 0.14 4.29 8.06 -2.91 -0.02 4.27 15 Total: -1.00 -65.73 238.81 2.59 -63.13 By element: Atomic # 1 Polarization: 10.24 SS G_CDS: -0.83 Total: 9.41 kcal Atomic # 6 Polarization: -30.26 SS G_CDS: 3.04 Total: -27.21 kcal Atomic # 7 Polarization: -92.42 SS G_CDS: -0.46 Total: -92.88 kcal Atomic # 8 Polarization: -8.76 SS G_CDS: -0.97 Total: -9.73 kcal Atomic # 14 Polarization: 55.47 SS G_CDS: 1.81 Total: 57.28 kcal Total: -65.73 2.59 -63.13 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089195946.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.843 kcal (2) G-P(sol) polarization free energy of solvation -65.727 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.133 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.710 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds