Wall clock time and date at job start Mon Mar 30 2020 02:39:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35895 * 116.99427 * 2 1 4 4 C 1.38367 * 120.14937 * 0.02562 * 3 2 1 5 5 C 1.38654 * 120.63951 * 179.97438 * 4 3 2 6 6 C 1.37984 * 120.40016 * 0.02562 * 5 4 3 7 7 C 1.38949 * 119.67315 * 359.97265 * 6 5 4 8 8 C 1.47388 * 135.30186 * 179.97438 * 7 6 5 9 9 C 1.40743 * 126.92046 * 359.97438 * 8 7 6 10 10 H 1.08005 * 119.99926 * 359.97438 * 9 8 7 11 11 C 1.39937 * 120.00480 * 179.97438 * 9 8 7 12 12 N 1.30876 * 119.99793 * 359.97438 * 11 9 8 13 13 Si 1.86798 * 120.00378 * 179.97438 * 11 9 8 14 14 H 1.48497 * 109.47189 * 89.99972 * 13 11 9 15 15 H 1.48501 * 109.47009 * 210.00164 * 13 11 9 16 16 H 1.48504 * 109.46978 * 329.99752 * 13 11 9 17 17 N 1.32766 * 106.16096 * 180.02562 * 8 7 6 18 18 N 1.28360 * 111.71275 * 0.02562 * 17 8 7 19 19 H 0.97002 * 124.28592 * 180.02562 * 18 17 8 20 20 C 1.37285 * 111.42200 * 359.74171 * 18 17 8 21 21 H 1.09002 * 109.47382 * 59.99788 * 1 2 3 22 22 H 1.09001 * 109.46938 * 299.99774 * 1 2 3 23 23 H 1.09004 * 109.46926 * 179.97438 * 1 2 3 24 24 H 1.07997 * 119.67668 * 0.02562 * 4 3 2 25 25 H 1.08000 * 119.80418 * 179.97438 * 5 4 3 26 26 H 1.07999 * 120.15858 * 180.02562 * 6 5 4 27 27 H 0.96994 * 119.99816 * 180.02562 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2952 2.3732 0.0005 5 6 1.9139 3.6140 0.0011 6 6 3.2906 3.7078 0.0006 7 6 4.0589 2.5501 0.0001 8 6 5.5020 2.2503 -0.0010 9 6 6.5586 3.1801 -0.0024 10 1 6.3461 4.2391 -0.0032 11 6 7.8845 2.7327 -0.0028 12 7 8.1420 1.4495 -0.0013 13 14 9.2868 3.9667 -0.0053 14 1 9.6594 4.2955 1.3940 15 1 10.4589 3.3826 -0.7055 16 1 8.8569 5.2031 -0.7067 17 7 5.6045 0.9267 -0.0016 18 7 4.4522 0.3611 -0.0015 19 1 4.3148 -0.5991 -0.0015 20 6 3.4390 1.2875 0.0048 21 1 -0.3634 0.5139 -0.8900 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 0.2169 2.3133 0.0014 25 1 1.3148 4.5126 0.0011 26 1 3.7685 4.6763 0.0014 27 1 9.0610 1.1393 -0.0012 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000089196104.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:14 Heat of formation + Delta-G solvation = 39.419643 kcal Electronic energy + Delta-G solvation = -14025.341561 eV Core-core repulsion = 11556.613200 eV Total energy + Delta-G solvation = -2468.728361 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 218.080 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.57983 -38.51100 -35.60684 -33.52982 -30.52682 -29.18014 -28.15627 -26.77686 -25.61690 -21.89937 -21.14571 -20.07705 -17.82112 -16.69384 -16.31053 -15.35975 -15.14038 -14.81052 -14.17878 -13.94182 -13.63333 -12.95376 -12.58455 -12.00850 -11.50459 -11.26118 -11.15120 -10.74465 -10.64718 -10.53673 -10.42523 -9.97619 -9.43202 -8.54705 -8.25433 -7.55683 -6.70564 -6.45121 -4.21808 2.08985 2.42825 3.11763 3.19173 3.22842 3.76840 4.09272 4.21401 4.40679 4.66607 5.27344 5.36553 5.50407 5.56277 5.64703 5.69757 5.95771 6.18960 6.44611 6.61213 6.71616 6.95883 7.19023 7.36075 7.47317 7.65430 8.03535 8.28232 8.65911 8.81027 9.11368 10.20568 10.51918 Molecular weight = 218.08amu Principal moments of inertia in cm(-1) A = 0.054576 B = 0.008066 C = 0.007054 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 512.918300 B = 3470.594064 C = 3968.366583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.329 6.329 3 C 0.086 3.914 4 C -0.187 4.187 5 C -0.166 4.166 6 C -0.063 4.063 7 C -0.150 4.150 8 C 0.206 3.794 9 C -0.429 4.429 10 H 0.085 0.915 11 C 0.069 3.931 12 N -0.767 5.767 13 Si 0.911 3.089 14 H -0.272 1.272 15 H -0.280 1.280 16 H -0.263 1.263 17 N -0.319 5.319 18 N -0.449 5.449 19 H 0.423 0.577 20 C 0.056 3.944 21 H 0.049 0.951 22 H 0.049 0.951 23 H 0.089 0.911 24 H 0.115 0.885 25 H 0.111 0.889 26 H 0.116 0.884 27 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.559 0.637 0.003 9.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.244 6.244 3 C 0.038 3.962 4 C -0.209 4.209 5 C -0.187 4.187 6 C -0.083 4.083 7 C -0.160 4.160 8 C 0.053 3.947 9 C -0.468 4.468 10 H 0.103 0.897 11 C -0.151 4.151 12 N -0.394 5.394 13 Si 0.736 3.264 14 H -0.197 1.197 15 H -0.205 1.205 16 H -0.187 1.187 17 N -0.148 5.148 18 N -0.157 5.157 19 H 0.263 0.737 20 C -0.065 4.065 21 H 0.068 0.932 22 H 0.068 0.932 23 H 0.108 0.892 24 H 0.133 0.867 25 H 0.129 0.871 26 H 0.134 0.866 27 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -8.492 -0.664 -0.007 8.518 hybrid contribution -0.378 0.729 0.013 0.821 sum -8.869 0.065 0.006 8.870 Atomic orbital electron populations 1.22857 0.79626 1.02741 1.00860 1.85962 1.20392 1.27826 1.90171 1.17837 0.88457 0.84173 1.05693 1.20588 0.98173 0.91892 1.10220 1.20348 0.94044 0.95902 1.08422 1.20222 0.92473 0.96819 0.98817 1.20024 0.95110 0.91397 1.09505 1.20119 0.88112 0.89352 0.97095 1.18475 0.88548 0.93003 1.46785 0.89661 1.25826 0.99893 0.95620 0.93800 1.69955 1.20819 1.14173 1.34487 0.86263 0.80126 0.81049 0.78920 1.19707 1.20486 1.18719 1.74296 1.01003 1.08772 1.30710 1.43306 1.01605 1.07537 1.63234 0.73697 1.18642 0.87852 0.92252 1.07723 0.93248 0.93243 0.89222 0.86712 0.87118 0.86634 0.91650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.43 9.81 101.05 0.99 1.42 15 2 O -0.33 -5.89 10.50 -19.41 -0.20 -6.10 15 3 C 0.09 1.75 6.71 -39.05 -0.26 1.49 15 4 C -0.19 -3.38 9.03 -39.38 -0.36 -3.74 15 5 C -0.17 -3.06 10.03 -39.52 -0.40 -3.45 15 6 C -0.06 -1.34 10.09 -39.41 -0.40 -1.74 15 7 C -0.15 -3.76 6.43 -105.00 -0.67 -4.43 15 8 C 0.21 5.80 6.95 -82.79 -0.58 5.22 15 9 C -0.43 -11.76 9.42 -38.00 -0.36 -12.12 15 10 H 0.09 2.17 7.85 -52.48 -0.41 1.75 15 11 C 0.07 1.82 5.50 -17.32 -0.10 1.72 15 12 N -0.77 -21.28 11.98 55.55 0.67 -20.62 15 13 Si 0.91 19.32 29.56 -169.99 -5.02 14.30 15 14 H -0.27 -5.67 7.11 56.52 0.40 -5.27 15 15 H -0.28 -5.83 7.11 56.52 0.40 -5.43 15 16 H -0.26 -5.43 7.11 56.52 0.40 -5.03 15 17 N -0.32 -9.00 10.40 33.34 0.35 -8.65 15 18 N -0.45 -11.01 6.85 32.42 0.22 -10.78 15 19 H 0.42 8.97 8.96 -190.50 -1.71 7.26 15 20 C 0.06 1.34 7.31 -84.03 -0.61 0.73 15 21 H 0.05 0.56 7.66 -51.93 -0.40 0.16 15 22 H 0.05 0.56 7.66 -51.93 -0.40 0.16 15 23 H 0.09 0.87 8.14 -51.93 -0.42 0.44 15 24 H 0.11 1.67 6.27 -52.49 -0.33 1.35 15 25 H 0.11 1.67 8.06 -52.49 -0.42 1.24 15 26 H 0.12 2.24 8.06 -52.49 -0.42 1.82 15 27 H 0.27 6.92 8.30 -40.82 -0.34 6.58 15 LS Contribution 242.82 15.07 3.66 3.66 Total: -1.00 -31.35 242.82 -6.72 -38.06 By element: Atomic # 1 Polarization: 8.68 SS G_CDS: -3.65 Total: 5.04 kcal Atomic # 6 Polarization: -12.17 SS G_CDS: -2.74 Total: -14.90 kcal Atomic # 7 Polarization: -41.29 SS G_CDS: 1.23 Total: -40.06 kcal Atomic # 8 Polarization: -5.89 SS G_CDS: -0.20 Total: -6.10 kcal Atomic # 14 Polarization: 19.32 SS G_CDS: -5.02 Total: 14.30 kcal Total LS contribution 3.66 Total: 3.66 kcal Total: -31.35 -6.72 -38.06 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089196104.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.485 kcal (2) G-P(sol) polarization free energy of solvation -31.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.719 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.065 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.420 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds