Wall clock time and date at job start Mon Mar 30 2020 02:25:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38929 * 119.69763 * 2 1 4 4 C 1.36611 * 120.79953 * 179.97438 * 3 2 1 5 5 C 1.39296 * 119.85235 * 0.02562 * 4 3 2 6 6 N 1.37085 * 133.76955 * 179.97438 * 5 4 3 7 7 H 0.97003 * 125.40284 * 359.97438 * 6 5 4 8 8 N 1.39862 * 109.19690 * 179.77260 * 6 5 4 9 9 C 1.30722 * 110.02065 * 0.39444 * 8 6 5 10 10 O 1.35704 * 126.17998 * 179.87885 * 9 8 6 11 11 C 1.34800 * 116.99552 * 359.68791 * 10 9 8 12 12 H 1.08000 * 120.00631 * 0.02562 * 11 10 9 13 13 C 1.38615 * 119.99837 * 180.02562 * 11 10 9 14 14 N 1.31590 * 120.00041 * 179.73101 * 13 11 10 15 15 Si 1.86800 * 120.00273 * 359.97438 * 13 11 10 16 16 H 1.48501 * 109.46783 * 90.00069 * 15 13 11 17 17 H 1.48495 * 109.47676 * 210.00319 * 15 13 11 18 18 H 1.48503 * 109.47002 * 330.00820 * 15 13 11 19 19 C 1.40765 * 119.40173 * 359.97438 * 5 4 3 20 20 C 1.36532 * 119.69459 * 179.97438 * 2 1 3 21 21 H 1.09004 * 109.47187 * 90.00418 * 1 2 3 22 22 H 1.09003 * 109.47318 * 210.00021 * 1 2 3 23 23 H 1.09001 * 109.47342 * 329.99971 * 1 2 3 24 24 H 1.08007 * 119.59916 * 359.97438 * 3 2 1 25 25 H 1.08003 * 120.07852 * 180.02562 * 4 3 2 26 26 H 0.97000 * 119.99711 * 180.02562 * 14 13 11 27 27 H 1.07995 * 120.17705 * 0.04100 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1952 1.2068 0.0000 4 6 3.5611 1.2331 0.0005 5 6 4.2776 0.0385 0.0005 6 7 5.6143 -0.2656 0.0005 7 1 6.3376 0.3808 0.0002 8 7 5.7697 -1.6555 0.0058 9 6 4.5989 -2.2368 0.0006 10 8 4.3684 -3.5741 0.0011 11 6 5.4482 -4.3811 0.0009 12 1 6.4407 -3.9553 0.0009 13 6 5.2847 -5.7576 0.0008 14 7 6.3387 -6.5454 -0.0046 15 14 3.5681 -6.4943 0.0017 16 1 3.1126 -6.6894 -1.3982 17 1 3.5917 -7.8038 0.7016 18 1 2.6354 -5.5753 0.7021 19 6 3.5813 -1.1849 0.0005 20 6 2.1833 -1.1860 0.0005 21 1 -0.3634 -0.0001 -1.0277 22 1 -0.3634 -0.8900 0.5138 23 1 -0.3634 0.8900 0.5138 24 1 1.6437 2.1355 -0.0004 25 1 4.0843 2.1779 0.0009 26 1 6.2242 -7.5086 -0.0051 27 1 1.6412 -2.1201 0.0003 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000100719935.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:25:35 Heat of formation + Delta-G solvation = 55.020535 kcal Electronic energy + Delta-G solvation = -13844.532648 eV Core-core repulsion = 11376.480793 eV Total energy + Delta-G solvation = -2468.051856 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 218.080 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -40.63323 -37.78022 -36.67368 -32.41186 -31.79422 -30.60628 -29.02793 -26.07051 -25.19780 -22.59246 -21.12676 -20.16355 -18.01560 -17.51012 -15.84309 -15.74408 -14.87930 -14.75831 -14.07745 -13.61942 -13.55350 -13.43703 -12.69699 -12.58367 -12.28074 -12.00385 -11.55691 -11.01459 -10.80847 -10.75561 -10.48496 -9.99548 -9.48169 -9.35852 -8.66261 -8.12051 -7.20638 -6.34539 -4.05467 1.40918 1.85725 3.17802 3.22139 3.35191 3.39704 3.44727 4.13641 4.25887 4.36497 4.95445 5.10288 5.11731 5.39398 5.47769 5.49418 5.74390 5.76968 5.95491 6.07340 6.20132 6.29903 6.64068 6.77173 6.90654 7.20265 7.80051 8.02549 8.05147 8.44491 9.01174 9.55272 10.74063 Molecular weight = 218.08amu Principal moments of inertia in cm(-1) A = 0.035207 B = 0.008969 C = 0.007176 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 795.116715 B = 3121.109960 C = 3901.080324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C -0.155 4.155 3 C -0.066 4.066 4 C -0.159 4.159 5 C 0.146 3.854 6 N -0.512 5.512 7 H 0.433 0.567 8 N -0.322 5.322 9 C 0.295 3.705 10 O -0.196 6.196 11 C -0.382 4.382 12 H 0.111 0.889 13 C 0.064 3.936 14 N -0.879 5.879 15 Si 0.900 3.100 16 H -0.272 1.272 17 H -0.281 1.281 18 H -0.259 1.259 19 C -0.169 4.169 20 C -0.024 4.024 21 H 0.061 0.939 22 H 0.061 0.939 23 H 0.059 0.941 24 H 0.122 0.878 25 H 0.121 0.879 26 H 0.279 0.721 27 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.369 13.363 0.017 16.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.157 4.157 3 C -0.087 4.087 4 C -0.181 4.181 5 C 0.027 3.973 6 N -0.228 5.228 7 H 0.277 0.723 8 N -0.164 5.164 9 C 0.083 3.917 10 O -0.089 6.089 11 C -0.459 4.459 12 H 0.128 0.872 13 C -0.139 4.139 14 N -0.518 5.518 15 Si 0.725 3.275 16 H -0.198 1.198 17 H -0.206 1.206 18 H -0.183 1.183 19 C -0.178 4.178 20 C -0.044 4.044 21 H 0.080 0.920 22 H 0.080 0.920 23 H 0.078 0.922 24 H 0.139 0.861 25 H 0.139 0.861 26 H 0.089 0.911 27 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -8.372 12.620 0.023 15.145 hybrid contribution -0.794 -0.025 -0.019 0.795 sum -9.166 12.595 0.004 15.578 Atomic orbital electron populations 1.20627 0.91392 1.02128 1.01644 1.19226 0.95840 0.92627 1.08024 1.20452 0.93088 0.97291 0.97846 1.19677 0.93776 0.94648 1.10020 1.18806 0.85688 0.94508 0.98260 1.45515 1.03544 1.04724 1.68983 0.72344 1.77095 1.19921 0.86369 1.32980 1.21612 0.89069 0.85733 0.95247 1.83747 1.34631 1.08319 1.82199 1.20747 0.85657 0.87395 1.52140 0.87170 1.24400 0.98964 0.94568 0.95989 1.69665 1.29017 1.04631 1.48532 0.86260 0.83549 0.78635 0.79013 1.19790 1.20605 1.18316 1.19219 0.93630 0.90331 1.14615 1.20250 0.91428 0.97953 0.94782 0.91987 0.91981 0.92175 0.86055 0.86098 0.91117 0.85739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.09 9.99 36.00 0.36 -0.73 15 2 C -0.16 -2.21 5.84 -104.99 -0.61 -2.82 15 3 C -0.07 -0.86 9.61 -39.91 -0.38 -1.24 15 4 C -0.16 -2.22 10.03 -39.78 -0.40 -2.62 15 5 C 0.15 2.61 7.33 -84.17 -0.62 2.00 15 6 N -0.51 -9.49 7.36 32.36 0.24 -9.25 15 7 H 0.43 6.20 8.96 -182.77 -1.64 4.56 15 8 N -0.32 -7.69 11.50 31.80 0.37 -7.32 15 9 C 0.30 7.32 8.08 -14.76 -0.12 7.20 15 10 O -0.20 -5.40 8.66 0.28 0.00 -5.40 15 11 C -0.38 -11.38 10.19 30.87 0.31 -11.07 15 12 H 0.11 3.51 7.28 -52.49 -0.38 3.12 15 13 C 0.06 1.85 5.49 -17.52 -0.10 1.75 15 14 N -0.88 -26.23 13.97 55.48 0.77 -25.46 15 15 Si 0.90 21.85 28.62 -169.99 -4.86 16.98 15 16 H -0.27 -6.46 7.11 56.52 0.40 -6.06 15 17 H -0.28 -6.54 7.11 56.52 0.40 -6.14 15 18 H -0.26 -6.22 7.11 56.52 0.40 -5.82 15 19 C -0.17 -3.49 6.37 -105.09 -0.67 -4.16 15 20 C -0.02 -0.42 9.68 -39.61 -0.38 -0.80 15 21 H 0.06 0.61 8.14 -51.93 -0.42 0.19 15 22 H 0.06 0.65 8.07 -51.93 -0.42 0.23 15 23 H 0.06 0.54 8.08 -51.93 -0.42 0.12 15 24 H 0.12 1.17 8.06 -52.48 -0.42 0.74 15 25 H 0.12 1.31 8.06 -52.48 -0.42 0.88 15 26 H 0.28 7.62 8.31 -40.82 -0.34 7.29 15 27 H 0.12 2.10 8.06 -52.49 -0.42 1.68 15 LS Contribution 247.08 15.07 3.72 3.72 Total: -1.00 -32.35 247.08 -6.05 -38.40 By element: Atomic # 1 Polarization: 4.49 SS G_CDS: -3.69 Total: 0.80 kcal Atomic # 6 Polarization: -9.88 SS G_CDS: -2.61 Total: -12.48 kcal Atomic # 7 Polarization: -43.41 SS G_CDS: 1.38 Total: -42.03 kcal Atomic # 8 Polarization: -5.40 SS G_CDS: 0.00 Total: -5.40 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -4.86 Total: 16.98 kcal Total LS contribution 3.72 Total: 3.72 kcal Total: -32.35 -6.05 -38.40 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000100719935.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.424 kcal (2) G-P(sol) polarization free energy of solvation -32.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.073 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.403 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.021 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds