Wall clock time and date at job start Mon Mar 30 2020 02:25:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38929 * 119.69763 * 2 1 4 4 C 1.36611 * 120.79953 * 179.97438 * 3 2 1 5 5 C 1.39296 * 119.85235 * 0.02562 * 4 3 2 6 6 N 1.37085 * 133.76955 * 179.97438 * 5 4 3 7 7 H 0.97003 * 125.40284 * 359.97438 * 6 5 4 8 8 N 1.39862 * 109.19690 * 179.77260 * 6 5 4 9 9 C 1.30722 * 110.02065 * 0.39444 * 8 6 5 10 10 O 1.35704 * 126.17998 * 179.87885 * 9 8 6 11 11 C 1.34800 * 116.99552 * 359.68791 * 10 9 8 12 12 H 1.08000 * 120.00631 * 0.02562 * 11 10 9 13 13 C 1.38615 * 119.99837 * 180.02562 * 11 10 9 14 14 N 1.31590 * 120.00041 * 179.73101 * 13 11 10 15 15 Si 1.86800 * 120.00273 * 359.97438 * 13 11 10 16 16 H 1.48501 * 109.46783 * 90.00069 * 15 13 11 17 17 H 1.48495 * 109.47676 * 210.00319 * 15 13 11 18 18 H 1.48503 * 109.47002 * 330.00820 * 15 13 11 19 19 C 1.40765 * 119.40173 * 359.97438 * 5 4 3 20 20 C 1.36532 * 119.69459 * 179.97438 * 2 1 3 21 21 H 1.09004 * 109.47187 * 90.00418 * 1 2 3 22 22 H 1.09003 * 109.47318 * 210.00021 * 1 2 3 23 23 H 1.09001 * 109.47342 * 329.99971 * 1 2 3 24 24 H 1.08007 * 119.59916 * 359.97438 * 3 2 1 25 25 H 1.08003 * 120.07852 * 180.02562 * 4 3 2 26 26 H 0.97000 * 119.99711 * 180.02562 * 14 13 11 27 27 H 1.07995 * 120.17705 * 0.04100 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1952 1.2068 0.0000 4 6 3.5611 1.2331 0.0005 5 6 4.2776 0.0385 0.0005 6 7 5.6143 -0.2656 0.0005 7 1 6.3376 0.3808 0.0002 8 7 5.7697 -1.6555 0.0058 9 6 4.5989 -2.2368 0.0006 10 8 4.3684 -3.5741 0.0011 11 6 5.4482 -4.3811 0.0009 12 1 6.4407 -3.9553 0.0009 13 6 5.2847 -5.7576 0.0008 14 7 6.3387 -6.5454 -0.0046 15 14 3.5681 -6.4943 0.0017 16 1 3.1126 -6.6894 -1.3982 17 1 3.5917 -7.8038 0.7016 18 1 2.6354 -5.5753 0.7021 19 6 3.5813 -1.1849 0.0005 20 6 2.1833 -1.1860 0.0005 21 1 -0.3634 -0.0001 -1.0277 22 1 -0.3634 -0.8900 0.5138 23 1 -0.3634 0.8900 0.5138 24 1 1.6437 2.1355 -0.0004 25 1 4.0843 2.1779 0.0009 26 1 6.2242 -7.5086 -0.0051 27 1 1.6412 -2.1201 0.0003 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000100719935.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:25:35 Heat of formation + Delta-G solvation = 30.738401 kcal Electronic energy + Delta-G solvation = -13845.585601 eV Core-core repulsion = 11376.480793 eV Total energy + Delta-G solvation = -2469.104808 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 218.080 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -42.14665 -39.54511 -38.15107 -34.52766 -33.13906 -31.95349 -30.51565 -27.65009 -26.91036 -23.91698 -22.56761 -21.83680 -20.05016 -18.95688 -17.74998 -17.17431 -16.50437 -16.16462 -15.94992 -15.00876 -14.80045 -14.74867 -14.41514 -14.31339 -14.03896 -12.90949 -12.80495 -12.68822 -12.45170 -12.13427 -11.99542 -11.84271 -11.37399 -11.12055 -10.50295 -9.56941 -8.64298 -8.52814 -6.31103 0.08522 0.59945 1.28157 1.32149 1.48583 1.66606 1.87805 2.26198 2.69116 2.81131 2.92894 3.68576 3.97304 4.09034 4.22650 4.41901 4.54567 4.69369 4.91908 5.00004 5.09002 5.24094 5.35242 5.44273 5.65554 5.74921 5.93774 6.03561 6.54014 6.70507 6.91580 7.45794 8.60306 Molecular weight = 218.08amu Principal moments of inertia in cm(-1) A = 0.035207 B = 0.008969 C = 0.007176 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 795.116715 B = 3121.109960 C = 3901.080324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C -0.136 4.136 3 C -0.054 4.054 4 C -0.145 4.145 5 C 0.136 3.864 6 N -0.501 5.501 7 H 0.450 0.550 8 N -0.356 5.356 9 C 0.262 3.738 10 O -0.215 6.215 11 C -0.400 4.400 12 H 0.069 0.931 13 C 0.012 3.988 14 N -0.922 5.922 15 Si 0.973 3.027 16 H -0.261 1.261 17 H -0.261 1.261 18 H -0.259 1.259 19 C -0.204 4.204 20 C -0.054 4.054 21 H 0.076 0.924 22 H 0.060 0.940 23 H 0.089 0.911 24 H 0.173 0.827 25 H 0.163 0.837 26 H 0.287 0.713 27 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.509 16.295 0.005 20.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.138 4.138 3 C -0.074 4.074 4 C -0.167 4.167 5 C 0.019 3.981 6 N -0.221 5.221 7 H 0.297 0.703 8 N -0.196 5.196 9 C 0.050 3.950 10 O -0.111 6.111 11 C -0.477 4.477 12 H 0.087 0.913 13 C -0.186 4.186 14 N -0.563 5.563 15 Si 0.794 3.206 16 H -0.186 1.186 17 H -0.185 1.185 18 H -0.183 1.183 19 C -0.212 4.212 20 C -0.074 4.074 21 H 0.095 0.905 22 H 0.079 0.921 23 H 0.107 0.893 24 H 0.190 0.810 25 H 0.181 0.819 26 H 0.097 0.903 27 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -11.487 15.606 0.011 19.378 hybrid contribution 0.151 -0.575 -0.019 0.595 sum -11.336 15.031 -0.008 18.826 Atomic orbital electron populations 1.20740 0.88504 1.03622 1.03008 1.19745 0.97901 0.91814 1.04322 1.21083 0.92797 0.98649 0.94838 1.20235 0.94358 0.94488 1.07576 1.19228 0.84792 0.95219 0.98891 1.45332 1.04999 1.02853 1.68953 0.70318 1.76866 1.21113 0.89647 1.31927 1.22179 0.91163 0.85315 0.96391 1.83676 1.33388 1.09767 1.84233 1.20508 0.85011 0.88461 1.53709 0.91322 1.25319 1.03674 0.94514 0.95135 1.69757 1.31413 1.05349 1.49813 0.85194 0.77640 0.78097 0.79679 1.18577 1.18533 1.18307 1.19455 0.94823 0.89640 1.17280 1.20406 0.90322 0.99534 0.97187 0.90537 0.92051 0.89251 0.80974 0.81900 0.90337 0.86359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.71 9.99 71.23 0.71 -1.00 15 2 C -0.14 -3.34 5.84 -20.10 -0.12 -3.46 15 3 C -0.05 -1.07 9.61 22.05 0.21 -0.86 15 4 C -0.14 -3.37 10.03 22.14 0.22 -3.15 15 5 C 0.14 4.68 7.33 39.19 0.29 4.96 15 6 N -0.50 -18.63 7.36 -51.53 -0.38 -19.01 15 7 H 0.45 12.63 8.96 -213.47 -1.91 10.71 15 8 N -0.36 -17.94 11.50 -166.92 -1.92 -19.86 15 9 C 0.26 13.71 8.08 86.97 0.70 14.41 15 10 O -0.22 -12.58 8.66 -21.92 -0.19 -12.77 15 11 C -0.40 -25.42 10.19 67.91 0.69 -24.73 15 12 H 0.07 4.77 7.28 -2.91 -0.02 4.75 15 13 C 0.01 0.74 5.49 84.82 0.47 1.21 15 14 N -0.92 -57.39 13.97 21.61 0.30 -57.09 15 15 Si 0.97 46.28 28.62 68.60 1.96 48.24 15 16 H -0.26 -11.82 7.11 99.48 0.71 -11.11 15 17 H -0.26 -11.44 7.11 99.48 0.71 -10.73 15 18 H -0.26 -12.17 7.11 99.48 0.71 -11.46 15 19 C -0.20 -8.49 6.37 -20.17 -0.13 -8.62 15 20 C -0.05 -1.86 9.68 22.25 0.22 -1.64 15 21 H 0.08 1.13 8.14 -2.38 -0.02 1.11 15 22 H 0.06 1.07 8.07 -2.39 -0.02 1.05 15 23 H 0.09 1.03 8.08 -2.39 -0.02 1.01 15 24 H 0.17 1.85 8.06 -2.91 -0.02 1.83 15 25 H 0.16 2.48 8.06 -2.91 -0.02 2.45 15 26 H 0.29 16.17 8.31 -92.71 -0.77 15.40 15 27 H 0.12 4.05 8.06 -2.91 -0.02 4.03 15 Total: -1.00 -76.64 247.08 2.33 -74.32 By element: Atomic # 1 Polarization: 9.75 SS G_CDS: -0.71 Total: 9.04 kcal Atomic # 6 Polarization: -26.13 SS G_CDS: 3.26 Total: -22.86 kcal Atomic # 7 Polarization: -93.97 SS G_CDS: -2.00 Total: -95.96 kcal Atomic # 8 Polarization: -12.58 SS G_CDS: -0.19 Total: -12.77 kcal Atomic # 14 Polarization: 46.28 SS G_CDS: 1.96 Total: 48.24 kcal Total: -76.64 2.33 -74.32 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000100719935.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.055 kcal (2) G-P(sol) polarization free energy of solvation -76.643 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.316 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.738 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds