Wall clock time and date at job start Mon Mar 30 2020 02:36:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.37825 * 126.53653 * 2 1 4 4 C 1.40158 * 125.30009 * 0.02562 * 3 2 1 5 5 H 1.08002 * 120.00168 * 0.02562 * 4 3 2 6 6 C 1.40350 * 120.00170 * 179.72381 * 4 3 2 7 7 N 1.30594 * 119.99933 * 0.27930 * 6 4 3 8 8 Si 1.86794 * 119.99933 * 180.27766 * 6 4 3 9 9 H 1.48491 * 109.47447 * 60.00350 * 8 6 4 10 10 H 1.48504 * 109.46883 * 180.02562 * 8 6 4 11 11 H 1.48502 * 109.47413 * 299.99878 * 8 6 4 12 12 N 1.32491 * 109.40228 * 180.27327 * 3 2 1 13 13 C 1.33972 * 109.79267 * 359.59399 * 12 3 2 14 14 C 1.40502 * 133.11237 * 180.13234 * 13 12 3 15 15 C 1.37743 * 119.69951 * 180.28726 * 14 13 12 16 16 O 1.35949 * 119.74531 * 179.97438 * 15 14 13 17 17 C 1.39561 * 120.50891 * 0.02562 * 15 14 13 18 18 C 1.37864 * 120.52621 * 0.02562 * 17 15 14 19 19 C 1.38088 * 126.54279 * 180.02562 * 2 1 3 20 20 H 1.08999 * 109.46582 * 89.98037 * 1 2 3 21 21 H 1.08994 * 109.46952 * 209.97735 * 1 2 3 22 22 H 1.08997 * 109.47091 * 329.98548 * 1 2 3 23 23 H 0.96991 * 119.99776 * 179.97438 * 7 6 4 24 24 H 1.07992 * 120.14855 * 0.27086 * 14 13 12 25 25 H 0.96706 * 113.99713 * 90.00114 * 16 15 14 26 26 H 1.08000 * 119.74096 * 180.02562 * 17 15 14 27 27 H 1.07993 * 120.02401 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2855 1.1074 0.0000 4 6 1.8486 2.4391 0.0005 5 1 0.7916 2.6607 0.0014 6 6 2.7847 3.4848 0.0063 7 7 4.0629 3.2170 0.0057 8 14 2.2023 5.2597 0.0148 9 1 1.3822 5.5057 1.2280 10 1 3.3784 6.1665 0.0195 11 1 1.3836 5.5179 -1.1969 12 7 3.5516 0.7171 -0.0060 13 6 3.6138 -0.6212 -0.0011 14 6 4.6829 -1.5328 -0.0014 15 6 4.4259 -2.8860 -0.0013 16 8 5.4597 -3.7689 -0.0022 17 6 3.1125 -3.3578 -0.0014 18 6 2.0520 -2.4768 -0.0021 19 6 2.2872 -1.1094 -0.0005 20 1 -0.3632 0.0004 -1.0277 21 1 -0.3633 -0.8901 0.5135 22 1 -0.3633 0.8898 0.5140 23 1 4.7098 3.9397 0.0094 24 1 5.7016 -1.1741 -0.0021 25 1 5.7595 -4.0244 0.8810 26 1 2.9252 -4.4214 -0.0009 27 1 1.0389 -2.8507 -0.0026 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000107288903.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:53 Heat of formation + Delta-G solvation = -1.700817 kcal Electronic energy + Delta-G solvation = -14055.623376 eV Core-core repulsion = 11585.111898 eV Total energy + Delta-G solvation = -2470.511478 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 218.080 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -42.17865 -39.32532 -36.38443 -35.27983 -34.38306 -30.62324 -30.40224 -27.72356 -27.08678 -23.27353 -22.58928 -21.42173 -19.33563 -18.61429 -17.53950 -17.47796 -16.37025 -16.12139 -15.91484 -15.10729 -14.79861 -14.61377 -13.81368 -13.58387 -13.49099 -13.00881 -12.93726 -12.70631 -12.56055 -11.98754 -11.95546 -11.39865 -11.03214 -10.83504 -9.87738 -9.02128 -8.65256 -8.52732 -6.60334 0.38451 0.78223 1.41990 1.47389 1.57277 2.15214 2.28663 2.42989 3.03070 3.43225 3.56319 3.92078 4.17553 4.36161 4.53413 4.58323 4.65529 4.72774 4.86399 5.09425 5.14197 5.35473 5.56667 5.73450 5.87073 6.03059 6.09598 6.37811 6.72000 7.06565 7.14933 8.00625 8.39706 Molecular weight = 218.08amu Principal moments of inertia in cm(-1) A = 0.044952 B = 0.008655 C = 0.007291 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 622.732969 B = 3234.184125 C = 3839.209905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.096 3.904 2 N -0.548 5.548 3 C 0.389 3.611 4 C -0.464 4.464 5 H 0.109 0.891 6 C 0.028 3.972 7 N -0.769 5.769 8 Si 1.005 2.995 9 H -0.252 1.252 10 H -0.272 1.272 11 H -0.253 1.253 12 N -0.587 5.587 13 C 0.072 3.928 14 C -0.178 4.178 15 C 0.103 3.897 16 O -0.505 6.505 17 C -0.184 4.184 18 C -0.083 4.083 19 C -0.026 4.026 20 H 0.065 0.935 21 H 0.089 0.911 22 H 0.084 0.916 23 H 0.285 0.715 24 H 0.103 0.897 25 H 0.402 0.598 26 H 0.153 0.847 27 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.137 -4.623 1.868 7.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 N -0.245 5.245 3 C 0.151 3.849 4 C -0.502 4.502 5 H 0.126 0.874 6 C -0.194 4.194 7 N -0.392 5.392 8 Si 0.824 3.176 9 H -0.176 1.176 10 H -0.197 1.197 11 H -0.177 1.177 12 N -0.313 5.313 13 C -0.055 4.055 14 C -0.201 4.201 15 C 0.057 3.943 16 O -0.317 6.317 17 C -0.205 4.205 18 C -0.105 4.105 19 C -0.134 4.134 20 H 0.084 0.916 21 H 0.108 0.892 22 H 0.102 0.898 23 H 0.095 0.905 24 H 0.121 0.879 25 H 0.260 0.740 26 H 0.170 0.830 27 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -5.445 -3.981 1.257 6.861 hybrid contribution -0.334 0.245 0.461 0.619 sum -5.779 -3.736 1.718 7.092 Atomic orbital electron populations 1.21781 0.75872 1.04228 1.02688 1.45659 1.07044 1.04394 1.67366 1.20869 0.83725 0.88966 0.91326 1.19020 0.96069 0.86798 1.48287 0.87352 1.27066 0.94063 1.06373 0.91938 1.70119 1.03307 1.36354 1.29374 0.84921 0.78725 0.73484 0.80481 1.17559 1.19700 1.17718 1.71263 1.18015 1.07585 1.34423 1.19796 0.92728 0.92515 1.00453 1.20299 0.96619 0.92038 1.11103 1.17895 0.87480 0.86558 1.02414 1.84740 1.50175 1.61870 1.34938 1.20970 0.90280 1.00044 1.09202 1.19886 0.99954 0.87713 1.02923 1.19341 0.91816 0.90306 1.11943 0.91645 0.89201 0.89752 0.90481 0.87883 0.74035 0.82962 0.84132 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 3.22 10.93 127.77 1.40 4.61 15 2 N -0.55 -26.02 3.26 -536.13 -1.75 -27.76 15 3 C 0.39 21.80 7.41 133.68 0.99 22.79 15 4 C -0.46 -24.13 8.99 23.25 0.21 -23.92 15 5 H 0.11 4.91 7.09 -2.91 -0.02 4.89 15 6 C 0.03 1.42 5.50 85.39 0.47 1.89 15 7 N -0.77 -42.71 11.85 21.89 0.26 -42.45 15 8 Si 1.01 36.43 29.56 68.60 2.03 38.45 15 9 H -0.25 -8.55 7.11 99.48 0.71 -7.85 15 10 H -0.27 -9.62 7.11 99.48 0.71 -8.91 15 11 H -0.25 -8.67 7.11 99.48 0.71 -7.96 15 12 N -0.59 -35.90 9.33 -186.56 -1.74 -37.64 15 13 C 0.07 3.94 7.20 40.14 0.29 4.23 15 14 C -0.18 -8.69 10.05 22.70 0.23 -8.46 15 15 C 0.10 4.11 6.69 22.47 0.15 4.26 15 16 O -0.51 -16.65 13.49 -92.98 -1.25 -17.90 15 17 C -0.18 -6.57 9.97 22.50 0.22 -6.35 15 18 C -0.08 -3.18 10.03 22.30 0.22 -2.96 15 19 C -0.03 -1.26 6.88 39.05 0.27 -0.99 15 20 H 0.07 1.98 8.14 -2.39 -0.02 1.96 15 21 H 0.09 2.44 8.14 -2.39 -0.02 2.42 15 22 H 0.08 2.64 7.32 -2.39 -0.02 2.63 15 23 H 0.28 14.28 8.29 -92.71 -0.77 13.51 15 24 H 0.10 5.05 8.06 -2.91 -0.02 5.03 15 25 H 0.40 8.77 9.06 -74.05 -0.67 8.10 15 26 H 0.15 4.22 8.06 -2.91 -0.02 4.20 15 27 H 0.14 4.24 8.06 -2.91 -0.02 4.22 15 Total: -1.00 -72.48 244.68 2.53 -69.95 By element: Atomic # 1 Polarization: 21.70 SS G_CDS: 0.53 Total: 22.24 kcal Atomic # 6 Polarization: -9.33 SS G_CDS: 4.45 Total: -4.88 kcal Atomic # 7 Polarization: -104.62 SS G_CDS: -3.23 Total: -107.85 kcal Atomic # 8 Polarization: -16.65 SS G_CDS: -1.25 Total: -17.90 kcal Atomic # 14 Polarization: 36.43 SS G_CDS: 2.03 Total: 38.45 kcal Total: -72.48 2.53 -69.95 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000107288903.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.245 kcal (2) G-P(sol) polarization free energy of solvation -72.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.230 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.529 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.946 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds