Wall clock time and date at job start Mon Mar 30 2020 02:34:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.08996 * 110.28648 * 2 1 4 4 C 1.54173 * 110.40446 * 237.83209 * 2 1 3 5 5 C 1.53869 * 108.70580 * 213.14312 * 4 2 1 6 6 H 1.09001 * 110.06867 * 287.86690 * 5 4 2 7 7 C 1.53006 * 110.02677 * 166.46874 * 5 4 2 8 8 C 1.50698 * 109.47184 * 176.35212 * 7 5 4 9 9 H 1.08005 * 119.99819 * 0.02562 * 8 7 5 10 10 C 1.37875 * 120.00046 * 179.97438 * 8 7 5 11 11 N 1.31511 * 120.00192 * 0.02562 * 10 8 7 12 12 Si 1.86798 * 119.99979 * 180.02562 * 10 8 7 13 13 H 1.48506 * 109.47297 * 180.02562 * 12 10 8 14 14 H 1.48503 * 109.47261 * 60.00310 * 12 10 8 15 15 H 1.48500 * 109.47454 * 300.00304 * 12 10 8 16 16 C 1.55050 * 106.62658 * 47.18217 * 5 4 2 17 17 S 1.82920 * 110.32406 * 122.12098 * 2 1 3 18 18 O 1.42093 * 109.34971 * 7.72604 * 17 2 1 19 19 O 1.42098 * 109.47424 * 234.56088 * 17 2 1 20 20 H 1.09003 * 109.46871 * 299.33449 * 1 2 3 21 21 H 1.08992 * 109.47662 * 59.33240 * 1 2 3 22 22 H 1.09000 * 109.47106 * 179.34149 * 1 2 3 23 23 H 1.08998 * 109.64493 * 93.28865 * 4 2 1 24 24 H 1.09003 * 109.63888 * 332.99940 * 4 2 1 25 25 H 1.08998 * 109.46509 * 56.35810 * 7 5 4 26 26 H 1.08993 * 109.46955 * 296.35370 * 7 5 4 27 27 H 0.97001 * 119.99934 * 359.97438 * 11 10 8 28 28 H 1.08998 * 110.79278 * 75.82852 * 16 5 4 29 29 H 1.08998 * 110.79463 * 199.29958 * 16 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9078 1.0224 0.0000 4 6 2.0674 -0.7693 -1.2232 5 6 3.3832 -1.4635 -0.8303 6 1 4.1777 -0.7252 -0.7217 7 6 3.7687 -2.4953 -1.8924 8 6 5.1023 -3.1031 -1.5416 9 1 5.6227 -2.7856 -0.6500 10 6 5.6576 -4.0653 -2.3582 11 7 5.0238 -4.4522 -3.4435 12 14 7.3103 -4.8192 -1.9229 13 1 7.6846 -5.8205 -2.9538 14 1 7.2179 -5.4832 -0.5978 15 1 8.3427 -3.7530 -1.8714 16 6 3.1248 -2.1690 0.5260 17 16 2.1653 -0.9121 1.4528 18 8 1.0830 -1.5448 2.1216 19 8 3.0582 -0.0804 2.1808 20 1 -0.3633 0.5035 0.8959 21 1 -0.3634 0.5241 -0.8838 22 1 -0.3633 -1.0276 -0.0118 23 1 2.2504 -0.0737 -2.0421 24 1 1.3378 -1.5165 -1.5356 25 1 3.8363 -2.0076 -2.8648 26 1 3.0113 -3.2781 -1.9302 27 1 4.1654 -4.0610 -3.6694 28 1 2.5381 -3.0766 0.3845 29 1 4.0644 -2.3894 1.0327 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000107418796.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:34:34 Heat of formation + Delta-G solvation = -97.175589 kcal Electronic energy + Delta-G solvation = -13285.704826 eV Core-core repulsion = 10914.204451 eV Total energy + Delta-G solvation = -2371.500375 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 218.076 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -37.20615 -36.79424 -35.75135 -33.69662 -31.90054 -27.35075 -26.67239 -23.64262 -21.94985 -20.06856 -18.48287 -17.08122 -16.63126 -15.93233 -15.30425 -14.43995 -14.13235 -13.78392 -13.29773 -13.07323 -12.55531 -12.48834 -11.93975 -11.83602 -11.79447 -11.69201 -11.27235 -10.91960 -10.82733 -10.68248 -10.19974 -10.18697 -9.99973 -9.52895 -8.64753 -8.42456 -6.44982 -4.15528 0.33708 2.80465 3.40237 3.40954 3.59704 3.82986 4.18334 4.46401 4.59801 4.81320 4.99528 5.09573 5.30663 5.33368 5.43086 5.55756 5.70265 5.81559 5.98335 6.02644 6.31689 6.40489 6.54594 7.15460 7.29412 8.07094 8.35425 8.78052 9.56042 10.95480 Molecular weight = 218.08amu Principal moments of inertia in cm(-1) A = 0.047483 B = 0.008189 C = 0.007460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 589.541579 B = 3418.376528 C = 3752.525578 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.556 4.556 3 H 0.135 0.865 4 C -0.109 4.109 5 C -0.076 4.076 6 H 0.084 0.916 7 C 0.024 3.976 8 C -0.603 4.603 9 H 0.051 0.949 10 C 0.016 3.984 11 N -0.911 5.911 12 Si 1.066 2.934 13 H -0.282 1.282 14 H -0.287 1.287 15 H -0.287 1.287 16 C -0.548 4.548 17 S 2.366 3.634 18 O -0.949 6.949 19 O -0.950 6.950 20 H 0.063 0.937 21 H 0.072 0.928 22 H 0.073 0.927 23 H 0.085 0.915 24 H 0.081 0.919 25 H 0.015 0.985 26 H 0.014 0.986 27 H 0.268 0.732 28 H 0.134 0.866 29 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.928 7.359 5.045 11.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.666 4.666 3 H 0.153 0.847 4 C -0.148 4.148 5 C -0.096 4.096 6 H 0.102 0.898 7 C -0.014 4.014 8 C -0.642 4.642 9 H 0.070 0.930 10 C -0.188 4.188 11 N -0.547 5.547 12 Si 0.895 3.105 13 H -0.208 1.208 14 H -0.214 1.214 15 H -0.214 1.214 16 C -0.680 4.680 17 S 2.553 3.447 18 O -0.946 6.946 19 O -0.947 6.947 20 H 0.082 0.918 21 H 0.091 0.909 22 H 0.092 0.908 23 H 0.104 0.896 24 H 0.100 0.900 25 H 0.033 0.967 26 H 0.033 0.967 27 H 0.079 0.921 28 H 0.152 0.848 29 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -5.958 6.423 5.557 10.374 hybrid contribution -0.953 1.081 -0.312 1.475 sum -6.910 7.504 5.244 11.471 Atomic orbital electron populations 1.21458 0.90121 1.03834 1.03051 1.30234 1.05962 1.12470 1.17898 0.84704 1.22228 0.97742 0.98954 0.95832 1.21860 0.95497 0.98192 0.94062 0.89807 1.19189 0.97333 0.92429 0.92456 1.22016 1.05073 1.25320 1.11753 0.93028 1.25831 1.04178 0.95086 0.93670 1.70803 1.16393 1.42910 1.24597 0.83570 0.74774 0.76391 0.75810 1.20751 1.21375 1.21365 1.30481 1.13955 1.13754 1.09824 1.09747 0.77033 0.79299 0.78633 1.93543 1.53800 1.75195 1.72090 1.93569 1.64741 1.66996 1.69375 0.91817 0.90906 0.90792 0.89609 0.90019 0.96677 0.96734 0.92109 0.84815 0.84482 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.37 8.60 37.15 0.32 -1.05 15 2 C -0.56 -6.81 3.81 -26.12 -0.10 -6.91 15 3 H 0.13 1.43 8.14 -51.93 -0.42 1.01 15 4 C -0.11 -1.52 5.30 -25.67 -0.14 -1.65 15 5 C -0.08 -1.35 2.55 -89.08 -0.23 -1.58 15 6 H 0.08 1.48 8.14 -51.93 -0.42 1.05 15 7 C 0.02 0.55 3.77 -27.88 -0.11 0.44 15 8 C -0.60 -16.06 8.66 -34.44 -0.30 -16.35 15 9 H 0.05 1.34 7.45 -52.48 -0.39 0.95 15 10 C 0.02 0.46 5.46 -17.82 -0.10 0.36 15 11 N -0.91 -26.84 13.65 55.43 0.76 -26.09 15 12 Si 1.07 24.53 29.90 -169.99 -5.08 19.45 15 13 H -0.28 -6.54 7.11 56.52 0.40 -6.14 15 14 H -0.29 -6.32 7.11 56.52 0.40 -5.92 15 15 H -0.29 -6.32 7.11 56.52 0.40 -5.92 15 16 C -0.55 -9.02 6.18 38.24 0.24 -8.79 15 17 S 2.37 35.28 5.95 -107.50 -0.64 34.64 15 18 O -0.95 -16.21 17.21 -57.73 -0.99 -17.20 15 19 O -0.95 -17.03 18.15 -57.73 -1.05 -18.08 15 20 H 0.06 0.64 8.14 -51.93 -0.42 0.21 15 21 H 0.07 0.67 8.14 -51.93 -0.42 0.24 15 22 H 0.07 0.81 8.00 -51.93 -0.42 0.39 15 23 H 0.09 1.10 8.14 -51.93 -0.42 0.68 15 24 H 0.08 1.09 7.79 -51.93 -0.40 0.68 15 25 H 0.02 0.36 8.01 -51.93 -0.42 -0.05 15 26 H 0.01 0.34 7.98 -51.93 -0.41 -0.07 15 27 H 0.27 7.79 7.22 -40.82 -0.29 7.50 15 28 H 0.13 2.14 8.08 -51.93 -0.42 1.72 15 29 H 0.14 2.30 7.89 -51.93 -0.41 1.89 15 LS Contribution 253.65 15.07 3.82 3.82 Total: -1.00 -33.09 253.65 -7.67 -40.75 By element: Atomic # 1 Polarization: 2.30 SS G_CDS: -4.07 Total: -1.77 kcal Atomic # 6 Polarization: -35.12 SS G_CDS: -0.41 Total: -35.53 kcal Atomic # 7 Polarization: -26.84 SS G_CDS: 0.76 Total: -26.09 kcal Atomic # 8 Polarization: -33.24 SS G_CDS: -2.04 Total: -35.28 kcal Atomic # 14 Polarization: 24.53 SS G_CDS: -5.08 Total: 19.45 kcal Atomic # 16 Polarization: 35.28 SS G_CDS: -0.64 Total: 34.64 kcal Total LS contribution 3.82 Total: 3.82 kcal Total: -33.09 -7.67 -40.75 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000107418796.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.422 kcal (2) G-P(sol) polarization free energy of solvation -33.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.668 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.753 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds