Wall clock time and date at job start Mon Mar 30 2020 02:34:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.08996 * 110.28648 * 2 1 4 4 C 1.54173 * 110.40446 * 237.83209 * 2 1 3 5 5 C 1.53869 * 108.70580 * 213.14312 * 4 2 1 6 6 H 1.09001 * 110.06867 * 287.86690 * 5 4 2 7 7 C 1.53006 * 110.02677 * 166.46874 * 5 4 2 8 8 C 1.50698 * 109.47184 * 176.35212 * 7 5 4 9 9 H 1.08005 * 119.99819 * 0.02562 * 8 7 5 10 10 C 1.37875 * 120.00046 * 179.97438 * 8 7 5 11 11 N 1.31511 * 120.00192 * 0.02562 * 10 8 7 12 12 Si 1.86798 * 119.99979 * 180.02562 * 10 8 7 13 13 H 1.48506 * 109.47297 * 180.02562 * 12 10 8 14 14 H 1.48503 * 109.47261 * 60.00310 * 12 10 8 15 15 H 1.48500 * 109.47454 * 300.00304 * 12 10 8 16 16 C 1.55050 * 106.62658 * 47.18217 * 5 4 2 17 17 S 1.82920 * 110.32406 * 122.12098 * 2 1 3 18 18 O 1.42093 * 109.34971 * 7.72604 * 17 2 1 19 19 O 1.42098 * 109.47424 * 234.56088 * 17 2 1 20 20 H 1.09003 * 109.46871 * 299.33449 * 1 2 3 21 21 H 1.08992 * 109.47662 * 59.33240 * 1 2 3 22 22 H 1.09000 * 109.47106 * 179.34149 * 1 2 3 23 23 H 1.08998 * 109.64493 * 93.28865 * 4 2 1 24 24 H 1.09003 * 109.63888 * 332.99940 * 4 2 1 25 25 H 1.08998 * 109.46509 * 56.35810 * 7 5 4 26 26 H 1.08993 * 109.46955 * 296.35370 * 7 5 4 27 27 H 0.97001 * 119.99934 * 359.97438 * 11 10 8 28 28 H 1.08998 * 110.79278 * 75.82852 * 16 5 4 29 29 H 1.08998 * 110.79463 * 199.29958 * 16 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9078 1.0224 0.0000 4 6 2.0674 -0.7693 -1.2232 5 6 3.3832 -1.4635 -0.8303 6 1 4.1777 -0.7252 -0.7217 7 6 3.7687 -2.4953 -1.8924 8 6 5.1023 -3.1031 -1.5416 9 1 5.6227 -2.7856 -0.6500 10 6 5.6576 -4.0653 -2.3582 11 7 5.0238 -4.4522 -3.4435 12 14 7.3103 -4.8192 -1.9229 13 1 7.6846 -5.8205 -2.9538 14 1 7.2179 -5.4832 -0.5978 15 1 8.3427 -3.7530 -1.8714 16 6 3.1248 -2.1690 0.5260 17 16 2.1653 -0.9121 1.4528 18 8 1.0830 -1.5448 2.1216 19 8 3.0582 -0.0804 2.1808 20 1 -0.3633 0.5035 0.8959 21 1 -0.3634 0.5241 -0.8838 22 1 -0.3633 -1.0276 -0.0118 23 1 2.2504 -0.0737 -2.0421 24 1 1.3378 -1.5165 -1.5356 25 1 3.8363 -2.0076 -2.8648 26 1 3.0113 -3.2781 -1.9302 27 1 4.1654 -4.0610 -3.6694 28 1 2.5381 -3.0766 0.3845 29 1 4.0644 -2.3894 1.0327 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000107418796.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:34:33 Heat of formation + Delta-G solvation = -120.608605 kcal Electronic energy + Delta-G solvation = -13286.720957 eV Core-core repulsion = 10914.204451 eV Total energy + Delta-G solvation = -2372.516506 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 218.076 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -38.55625 -38.10716 -37.06787 -35.43454 -33.37592 -29.09673 -27.83050 -25.40715 -23.23720 -21.52906 -19.73222 -18.88928 -18.00170 -17.25055 -16.58503 -15.66274 -15.61852 -15.56185 -14.77395 -14.38944 -13.87904 -13.75350 -13.44912 -13.21025 -13.16046 -13.05576 -12.62424 -12.41301 -12.27954 -12.12570 -11.94853 -11.65316 -11.38774 -10.90807 -10.60745 -10.51930 -8.64432 -6.34776 -0.88231 1.53457 1.59474 1.60822 1.78875 2.56404 2.62536 3.02334 3.18848 3.45459 3.71025 3.72874 3.92494 4.08217 4.33255 4.56870 4.69933 4.77163 4.89141 4.91653 5.05229 5.06936 5.22046 5.29469 5.48395 6.02773 6.22886 6.63035 7.44540 8.77075 Molecular weight = 218.08amu Principal moments of inertia in cm(-1) A = 0.047483 B = 0.008189 C = 0.007460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 589.541579 B = 3418.376528 C = 3752.525578 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.525 4.525 3 H 0.163 0.837 4 C -0.105 4.105 5 C -0.077 4.077 6 H 0.084 0.916 7 C 0.022 3.978 8 C -0.613 4.613 9 H 0.052 0.948 10 C -0.037 4.037 11 N -0.941 5.941 12 Si 1.109 2.891 13 H -0.286 1.286 14 H -0.272 1.272 15 H -0.270 1.270 16 C -0.563 4.563 17 S 2.389 3.611 18 O -0.970 6.970 19 O -0.979 6.979 20 H 0.074 0.926 21 H 0.098 0.902 22 H 0.070 0.930 23 H 0.104 0.896 24 H 0.088 0.912 25 H 0.002 0.998 26 H 0.001 0.999 27 H 0.258 0.742 28 H 0.132 0.868 29 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.489 8.704 5.425 12.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.638 4.638 3 H 0.181 0.819 4 C -0.144 4.144 5 C -0.097 4.097 6 H 0.103 0.897 7 C -0.016 4.016 8 C -0.651 4.651 9 H 0.070 0.930 10 C -0.235 4.235 11 N -0.579 5.579 12 Si 0.931 3.069 13 H -0.212 1.212 14 H -0.197 1.197 15 H -0.196 1.196 16 C -0.693 4.693 17 S 2.577 3.423 18 O -0.967 6.967 19 O -0.976 6.976 20 H 0.093 0.907 21 H 0.117 0.883 22 H 0.089 0.911 23 H 0.122 0.878 24 H 0.107 0.893 25 H 0.020 0.980 26 H 0.019 0.981 27 H 0.068 0.932 28 H 0.150 0.850 29 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -6.508 7.757 5.972 11.756 hybrid contribution -0.833 0.702 -0.448 1.178 sum -7.341 8.460 5.524 12.489 Atomic orbital electron populations 1.21633 0.88410 1.04403 1.04948 1.30054 1.07184 1.12752 1.13763 0.81901 1.22174 0.95709 0.99490 0.96988 1.21753 0.97888 0.97141 0.92934 0.89744 1.19112 0.95542 0.93325 0.93580 1.22493 1.06424 1.24862 1.11315 0.92970 1.27199 1.07085 0.95879 0.93343 1.70920 1.16600 1.44252 1.26112 0.83020 0.71604 0.76174 0.76072 1.21181 1.19717 1.19558 1.30532 1.14225 1.14864 1.09672 1.09060 0.75879 0.78358 0.78977 1.93511 1.53853 1.75940 1.73373 1.93527 1.65891 1.67162 1.71039 0.90655 0.88299 0.91060 0.87755 0.89335 0.98021 0.98077 0.93228 0.84968 0.85532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.40 8.60 71.98 0.62 -1.78 15 2 C -0.52 -10.98 3.81 30.99 0.12 -10.86 15 3 H 0.16 2.67 8.14 -2.39 -0.02 2.65 15 4 C -0.11 -2.64 5.30 31.28 0.17 -2.47 15 5 C -0.08 -2.68 2.55 -9.80 -0.03 -2.70 15 6 H 0.08 2.89 8.14 -2.39 -0.02 2.87 15 7 C 0.02 1.04 3.77 29.85 0.11 1.15 15 8 C -0.61 -32.89 8.66 25.60 0.22 -32.67 15 9 H 0.05 2.72 7.45 -2.91 -0.02 2.70 15 10 C -0.04 -2.09 5.46 84.65 0.46 -1.63 15 11 N -0.94 -56.43 13.65 21.45 0.29 -56.14 15 12 Si 1.11 49.24 29.90 68.60 2.05 51.29 15 13 H -0.29 -12.82 7.11 99.48 0.71 -12.12 15 14 H -0.27 -11.28 7.11 99.48 0.71 -10.57 15 15 H -0.27 -11.17 7.11 99.48 0.71 -10.46 15 16 C -0.56 -18.38 6.18 72.68 0.45 -17.93 15 17 S 2.39 67.53 5.95 -56.49 -0.34 67.19 15 18 O -0.97 -31.75 17.21 -127.47 -2.19 -33.95 15 19 O -0.98 -33.79 18.15 -127.47 -2.31 -36.10 15 20 H 0.07 1.20 8.14 -2.39 -0.02 1.18 15 21 H 0.10 1.32 8.14 -2.39 -0.02 1.30 15 22 H 0.07 1.33 8.00 -2.39 -0.02 1.31 15 23 H 0.10 2.31 8.14 -2.39 -0.02 2.29 15 24 H 0.09 2.14 7.79 -2.39 -0.02 2.12 15 25 H 0.00 0.07 8.01 -2.39 -0.02 0.06 15 26 H 0.00 0.05 7.98 -2.39 -0.02 0.03 15 27 H 0.26 15.43 7.22 -92.71 -0.67 14.76 15 28 H 0.13 4.28 8.08 -2.39 -0.02 4.26 15 29 H 0.13 4.32 7.89 -2.39 -0.02 4.30 15 Total: -1.00 -70.78 253.65 0.84 -69.93 By element: Atomic # 1 Polarization: 5.45 SS G_CDS: 1.22 Total: 6.67 kcal Atomic # 6 Polarization: -71.02 SS G_CDS: 2.12 Total: -68.89 kcal Atomic # 7 Polarization: -56.43 SS G_CDS: 0.29 Total: -56.14 kcal Atomic # 8 Polarization: -65.54 SS G_CDS: -4.51 Total: -70.05 kcal Atomic # 14 Polarization: 49.24 SS G_CDS: 2.05 Total: 51.29 kcal Atomic # 16 Polarization: 67.53 SS G_CDS: -0.34 Total: 67.19 kcal Total: -70.78 0.84 -69.93 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000107418796.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.674 kcal (2) G-P(sol) polarization free energy of solvation -70.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.935 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.609 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds