Wall clock time and date at job start Mon Mar 30 2020 02:34:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09004 * 110.27843 * 2 1 4 4 C 1.54164 * 110.32099 * 122.11459 * 2 1 3 5 5 C 1.54137 * 108.56968 * 91.02986 * 4 2 1 6 6 H 1.09007 * 110.03838 * 287.88255 * 5 4 2 7 7 C 1.52996 * 110.03506 * 166.50158 * 5 4 2 8 8 C 1.50700 * 109.47353 * 176.32726 * 7 5 4 9 9 H 1.08000 * 119.99379 * 359.97438 * 8 7 5 10 10 C 1.37873 * 120.00123 * 179.97438 * 8 7 5 11 11 N 1.31513 * 119.99977 * 179.97438 * 10 8 7 12 12 Si 1.86799 * 120.00051 * 359.97438 * 10 8 7 13 13 H 1.48503 * 109.47018 * 90.00150 * 12 10 8 14 14 H 1.48497 * 109.47267 * 209.99715 * 12 10 8 15 15 H 1.48500 * 109.47372 * 330.00251 * 12 10 8 16 16 C 1.55041 * 106.64220 * 47.19047 * 5 4 2 17 17 S 1.82923 * 110.31924 * 237.88876 * 2 1 3 18 18 O 1.42107 * 109.35193 * 356.61588 * 17 2 1 19 19 O 1.42094 * 109.35330 * 129.82105 * 17 2 1 20 20 H 1.08999 * 109.46680 * 179.29903 * 1 2 3 21 21 H 1.08998 * 109.47007 * 299.29763 * 1 2 3 22 22 H 1.08996 * 109.47351 * 59.30205 * 1 2 3 23 23 H 1.08995 * 109.64612 * 210.84509 * 4 2 1 24 24 H 1.09001 * 109.64047 * 331.14451 * 4 2 1 25 25 H 1.09012 * 109.46628 * 296.32363 * 7 5 4 26 26 H 1.09001 * 109.47356 * 56.31998 * 7 5 4 27 27 H 0.96999 * 120.00174 * 179.97438 * 11 10 8 28 28 H 1.09003 * 110.79315 * 199.26939 * 16 5 4 29 29 H 1.09005 * 110.79236 * 75.81120 * 16 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9079 1.0225 0.0000 4 6 2.0654 -0.7686 1.2245 5 6 2.2605 -2.2458 0.8300 6 1 1.2922 -2.7343 0.7212 7 6 3.0941 -2.9661 1.8917 8 6 3.2010 -4.4276 1.5401 9 1 2.7219 -4.8049 0.6487 10 6 3.9104 -5.2829 2.3562 11 7 4.0033 -6.5584 2.0496 12 14 4.7395 -4.6300 3.8975 13 1 3.7972 -4.7186 5.0419 14 1 5.9498 -5.4395 4.1893 15 1 5.1306 -3.2130 3.6869 16 6 3.0116 -2.2477 -0.5263 17 16 2.1653 -0.9118 -1.4530 18 8 1.0736 -1.4607 -2.1786 19 8 3.1339 -0.1159 -2.1218 20 1 -0.3632 -1.0276 -0.0126 21 1 -0.3633 0.5029 0.8962 22 1 -0.3634 0.5246 -0.8836 23 1 3.0192 -0.3428 1.5361 24 1 1.3495 -0.6976 2.0433 25 1 4.0914 -2.5276 1.9297 26 1 2.6135 -2.8606 2.8643 27 1 4.5026 -7.1601 2.6236 28 1 2.8927 -3.2054 -1.0332 29 1 4.0665 -2.0121 -0.3849 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000107418798.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:34:35 Heat of formation + Delta-G solvation = -113.827649 kcal Electronic energy + Delta-G solvation = -13321.926896 eV Core-core repulsion = 10949.704434 eV Total energy + Delta-G solvation = -2372.222462 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 218.076 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -38.55617 -37.98169 -37.00638 -35.07110 -33.42669 -29.93187 -27.71275 -25.38159 -23.01782 -21.20328 -19.70271 -18.91035 -17.51929 -17.29599 -16.69878 -16.26294 -15.53115 -15.13858 -14.72375 -14.36302 -13.88207 -13.72704 -13.67196 -13.17931 -13.04532 -12.90649 -12.73008 -12.55340 -12.26981 -11.97676 -11.74254 -11.44457 -11.32186 -11.10626 -10.87002 -10.71693 -8.25161 -6.28977 -0.82024 1.39375 1.41496 1.52097 1.67245 2.39163 2.69023 3.07862 3.11682 3.54332 3.81654 3.86523 3.89998 4.17166 4.40279 4.66409 4.79514 4.88463 4.89928 5.02337 5.11308 5.14770 5.30227 5.37251 5.57294 5.69441 6.31984 6.80203 7.35206 8.91651 Molecular weight = 218.08amu Principal moments of inertia in cm(-1) A = 0.046172 B = 0.008544 C = 0.008069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 606.278794 B = 3276.526002 C = 3469.173319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.521 4.521 3 H 0.170 0.830 4 C -0.106 4.106 5 C -0.077 4.077 6 H 0.081 0.919 7 C -0.002 4.002 8 C -0.527 4.527 9 H 0.034 0.966 10 C -0.001 4.001 11 N -0.956 5.956 12 Si 0.948 3.052 13 H -0.267 1.267 14 H -0.293 1.293 15 H -0.237 1.237 16 C -0.564 4.564 17 S 2.380 3.620 18 O -0.975 6.975 19 O -0.982 6.982 20 H 0.064 0.936 21 H 0.102 0.898 22 H 0.071 0.929 23 H 0.100 0.900 24 H 0.112 0.888 25 H 0.032 0.968 26 H 0.034 0.966 27 H 0.264 0.736 28 H 0.117 0.883 29 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.449 15.749 0.526 16.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.635 4.635 3 H 0.188 0.812 4 C -0.145 4.145 5 C -0.097 4.097 6 H 0.099 0.901 7 C -0.040 4.040 8 C -0.565 4.565 9 H 0.052 0.948 10 C -0.197 4.197 11 N -0.597 5.597 12 Si 0.771 3.229 13 H -0.192 1.192 14 H -0.219 1.219 15 H -0.160 1.160 16 C -0.695 4.695 17 S 2.570 3.430 18 O -0.972 6.972 19 O -0.979 6.979 20 H 0.083 0.917 21 H 0.120 0.880 22 H 0.090 0.910 23 H 0.118 0.882 24 H 0.131 0.869 25 H 0.051 0.949 26 H 0.052 0.948 27 H 0.072 0.928 28 H 0.135 0.865 29 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -4.462 15.784 -0.469 16.409 hybrid contribution 0.650 -0.976 1.044 1.570 sum -3.811 14.808 0.575 15.301 Atomic orbital electron populations 1.21660 0.89068 1.04025 1.04914 1.30041 1.07010 1.12690 1.13728 0.81199 1.22268 1.04321 0.91109 0.96775 1.21799 0.98934 0.96392 0.92624 0.90087 1.19536 0.96173 0.93232 0.95061 1.21530 1.31991 0.93910 1.09055 0.94813 1.26051 0.97052 0.94807 1.01812 1.70086 1.43838 1.05290 1.40523 0.85693 0.77993 0.80010 0.79161 1.19170 1.21927 1.15961 1.30549 1.12346 1.16538 1.10071 1.09263 0.75806 0.78606 0.79362 1.93522 1.53714 1.78837 1.71157 1.93514 1.61803 1.68678 1.73892 0.91713 0.87980 0.91026 0.88162 0.86939 0.94945 0.94762 0.92752 0.86462 0.84284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.43 8.57 71.98 0.62 -1.81 15 2 C -0.52 -9.89 3.81 30.99 0.12 -9.77 15 3 H 0.17 2.21 8.14 -2.39 -0.02 2.19 15 4 C -0.11 -2.25 5.30 31.37 0.17 -2.08 15 5 C -0.08 -2.47 2.56 -9.71 -0.02 -2.50 15 6 H 0.08 2.67 8.14 -2.38 -0.02 2.65 15 7 C 0.00 -0.07 3.53 29.85 0.11 0.03 15 8 C -0.53 -28.44 9.21 25.60 0.24 -28.20 15 9 H 0.03 2.03 7.70 -2.91 -0.02 2.00 15 10 C 0.00 -0.06 5.47 84.65 0.46 0.40 15 11 N -0.96 -59.06 13.96 21.45 0.30 -58.76 15 12 Si 0.95 41.83 27.47 68.60 1.88 43.72 15 13 H -0.27 -11.27 7.11 99.48 0.71 -10.56 15 14 H -0.29 -13.10 7.11 99.48 0.71 -12.39 15 15 H -0.24 -9.26 6.54 99.48 0.65 -8.61 15 16 C -0.56 -18.07 6.18 72.68 0.45 -17.63 15 17 S 2.38 66.61 5.96 -56.49 -0.34 66.28 15 18 O -0.98 -33.66 17.21 -127.49 -2.19 -35.86 15 19 O -0.98 -32.68 18.14 -127.49 -2.31 -34.99 15 20 H 0.06 1.31 8.06 -2.39 -0.02 1.29 15 21 H 0.10 1.27 8.14 -2.39 -0.02 1.25 15 22 H 0.07 1.17 8.14 -2.39 -0.02 1.15 15 23 H 0.10 1.82 8.10 -2.39 -0.02 1.80 15 24 H 0.11 1.96 7.88 -2.39 -0.02 1.94 15 25 H 0.03 1.26 7.17 -2.38 -0.02 1.25 15 26 H 0.03 1.31 7.57 -2.39 -0.02 1.29 15 27 H 0.26 15.29 8.31 -92.71 -0.77 14.52 15 28 H 0.12 4.24 7.89 -2.39 -0.02 4.22 15 29 H 0.14 4.19 8.08 -2.38 -0.02 4.17 15 Total: -1.00 -73.56 251.45 0.53 -73.03 By element: Atomic # 1 Polarization: 7.08 SS G_CDS: 1.06 Total: 8.15 kcal Atomic # 6 Polarization: -63.69 SS G_CDS: 2.13 Total: -61.56 kcal Atomic # 7 Polarization: -59.06 SS G_CDS: 0.30 Total: -58.76 kcal Atomic # 8 Polarization: -66.34 SS G_CDS: -4.51 Total: -70.85 kcal Atomic # 14 Polarization: 41.83 SS G_CDS: 1.88 Total: 43.72 kcal Atomic # 16 Polarization: 66.61 SS G_CDS: -0.34 Total: 66.28 kcal Total: -73.56 0.53 -73.03 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000107418798.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.799 kcal (2) G-P(sol) polarization free energy of solvation -73.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.533 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.029 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds