Wall clock time and date at job start Mon Mar 30 2020 02:25:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38664 * 119.75207 * 2 1 4 4 C 1.38031 * 120.41721 * 179.97438 * 3 2 1 5 5 C 1.38637 * 119.84540 * 359.79514 * 4 3 2 6 6 C 1.40497 * 119.96898 * 0.47200 * 5 4 3 7 7 C 1.37787 * 119.75054 * 180.02562 * 2 1 3 8 8 N 1.36038 * 107.14709 * 179.71487 * 6 5 4 9 9 C 1.30701 * 109.69760 * 359.77635 * 8 6 5 10 10 O 1.35288 * 125.06352 * 179.97438 * 9 8 6 11 11 N 1.36948 * 109.87107 * 0.02562 * 9 8 6 12 12 C 1.37375 * 126.41854 * 179.97438 * 11 9 8 13 13 H 1.07997 * 120.00351 * 211.80455 * 12 11 9 14 14 C 1.38870 * 119.99612 * 31.51618 * 12 11 9 15 15 N 1.31416 * 119.99970 * 19.84145 * 14 12 11 16 16 Si 1.86793 * 120.00013 * 199.83961 * 14 12 11 17 17 H 1.48500 * 109.47227 * 90.00231 * 16 14 12 18 18 H 1.48498 * 109.47195 * 210.00381 * 16 14 12 19 19 H 1.48508 * 109.47438 * 330.00130 * 16 14 12 20 20 H 1.09007 * 109.46994 * 269.97750 * 1 2 3 21 21 H 1.09001 * 109.47470 * 29.97143 * 1 2 3 22 22 H 1.09002 * 109.47433 * 149.97632 * 1 2 3 23 23 H 1.07995 * 119.79272 * 0.02562 * 3 2 1 24 24 H 1.08004 * 120.07593 * 180.02562 * 4 3 2 25 25 H 1.07997 * 120.10570 * 0.02562 * 7 2 1 26 26 H 0.96705 * 113.99997 * 270.02372 * 10 9 8 27 27 H 0.97003 * 120.00425 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1951 1.2039 0.0000 4 6 3.5753 1.2199 0.0005 5 6 4.2791 0.0255 0.0054 6 6 3.5869 -1.1971 -0.0003 7 6 2.1907 -1.1963 -0.0005 8 7 4.5205 -2.1866 -0.0001 9 6 5.7178 -1.6626 0.0004 10 8 6.8738 -2.3654 0.0012 11 7 5.6279 -0.2961 0.0011 12 6 6.6774 0.5903 0.0023 13 1 6.5768 1.5457 0.4957 14 6 7.8698 0.2554 -0.6258 15 7 7.8901 -0.6953 -1.5329 16 14 9.4447 1.1561 -0.1814 17 1 10.1219 0.4480 0.9344 18 1 10.3440 1.1930 -1.3626 19 1 9.1203 2.5436 0.2372 20 1 -0.3633 -0.0004 1.0277 21 1 -0.3634 0.8902 -0.5134 22 1 -0.3634 -0.8898 -0.5142 23 1 1.6477 2.1348 0.0004 24 1 4.1057 2.1607 0.0009 25 1 1.6484 -2.1302 -0.0014 26 1 7.2092 -2.5699 0.8848 27 1 8.7229 -0.9290 -1.9720 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000108267629.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:25:43 Heat of formation + Delta-G solvation = 29.014019 kcal Electronic energy + Delta-G solvation = -14253.179235 eV Core-core repulsion = 11783.999652 eV Total energy + Delta-G solvation = -2469.179583 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 218.080 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.76444 -37.20212 -35.44905 -33.96017 -31.69482 -30.60583 -28.39632 -25.99364 -24.74044 -21.79746 -20.53163 -20.25112 -18.26713 -16.61381 -16.12581 -15.26133 -14.89244 -14.45806 -13.86450 -13.26639 -13.13634 -13.01788 -12.54180 -12.04405 -11.69303 -11.48779 -11.34498 -11.22461 -10.77844 -10.63388 -10.20867 -10.13264 -9.72972 -8.87837 -8.68222 -7.27089 -6.99553 -6.78433 -4.48555 1.95034 2.49509 2.96227 3.00204 3.04554 3.73485 3.80510 4.23124 4.69513 4.85569 5.09661 5.57073 5.65524 5.85735 5.99738 6.03480 6.22476 6.37791 6.52158 6.58417 6.71205 7.01992 7.07196 7.37378 7.41258 7.56939 7.85991 8.05993 8.34785 8.64558 9.20976 9.39875 10.22181 Molecular weight = 218.08amu Principal moments of inertia in cm(-1) A = 0.046764 B = 0.009340 C = 0.008052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 598.608458 B = 2997.190674 C = 3476.446270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C -0.117 4.117 3 C -0.143 4.143 4 C -0.079 4.079 5 C 0.005 3.995 6 C 0.052 3.948 7 C -0.081 4.081 8 N -0.541 5.541 9 C 0.422 3.578 10 O -0.418 6.418 11 N -0.290 5.290 12 C -0.370 4.370 13 H 0.107 0.893 14 C 0.057 3.943 15 N -0.795 5.795 16 Si 0.934 3.066 17 H -0.270 1.270 18 H -0.278 1.278 19 H -0.265 1.265 20 H 0.058 0.942 21 H 0.057 0.943 22 H 0.057 0.943 23 H 0.112 0.888 24 H 0.110 0.890 25 H 0.112 0.888 26 H 0.374 0.626 27 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.402 2.661 3.583 6.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.120 4.120 3 C -0.163 4.163 4 C -0.099 4.099 5 C -0.109 4.109 6 C -0.073 4.073 7 C -0.101 4.101 8 N -0.275 5.275 9 C 0.124 3.876 10 O -0.214 6.214 11 N 0.029 4.971 12 C -0.498 4.498 13 H 0.125 0.875 14 C -0.159 4.159 15 N -0.422 5.422 16 Si 0.758 3.242 17 H -0.195 1.195 18 H -0.203 1.203 19 H -0.189 1.189 20 H 0.077 0.923 21 H 0.076 0.924 22 H 0.076 0.924 23 H 0.130 0.870 24 H 0.129 0.871 25 H 0.130 0.870 26 H 0.228 0.772 27 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -4.153 1.707 2.780 5.281 hybrid contribution 1.374 1.170 0.472 1.866 sum -2.779 2.877 3.251 5.155 Atomic orbital electron populations 1.20596 0.92080 1.01659 1.01169 1.19281 0.94871 0.92686 1.05116 1.20375 0.92703 0.96703 1.06561 1.19799 0.93176 0.94946 1.02002 1.18792 0.84692 0.96286 1.11175 1.18623 0.93349 0.88582 1.06728 1.19775 0.90229 0.96914 1.03172 1.70472 0.96893 1.30521 1.29609 1.20140 0.85805 0.79170 1.02506 1.84957 1.34587 1.71151 1.30700 1.41842 1.03545 1.05766 1.45902 1.19690 0.90449 1.01311 1.38319 0.87492 1.25559 1.00323 0.96717 0.93256 1.69930 1.28840 1.26400 1.17066 0.85840 0.79946 0.79846 0.78613 1.19481 1.20267 1.18899 0.92308 0.92404 0.92392 0.86964 0.87145 0.86978 0.77242 0.90715 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.33 10.00 36.00 0.36 -0.97 15 2 C -0.12 -2.13 5.88 -104.63 -0.61 -2.74 15 3 C -0.14 -2.64 9.68 -39.50 -0.38 -3.02 15 4 C -0.08 -1.70 10.01 -39.51 -0.40 -2.10 15 5 C 0.01 0.14 6.81 -83.78 -0.57 -0.43 15 6 C 0.05 1.31 7.22 -84.63 -0.61 0.70 15 7 C -0.08 -1.69 9.73 -39.23 -0.38 -2.08 15 8 N -0.54 -14.42 11.30 -12.09 -0.14 -14.56 15 9 C 0.42 11.30 8.27 -88.44 -0.73 10.57 15 10 O -0.42 -10.20 11.00 -17.56 -0.19 -10.40 15 11 N -0.29 -7.79 2.90 -61.04 -0.18 -7.97 15 12 C -0.37 -9.63 9.94 -14.83 -0.15 -9.78 15 13 H 0.11 2.64 7.90 -52.49 -0.41 2.23 15 14 C 0.06 1.43 4.88 -17.50 -0.09 1.34 15 15 N -0.80 -21.22 11.05 55.49 0.61 -20.60 15 16 Si 0.93 18.62 29.59 -169.99 -5.03 13.59 15 17 H -0.27 -5.26 7.11 56.52 0.40 -4.86 15 18 H -0.28 -5.51 7.11 56.52 0.40 -5.11 15 19 H -0.26 -5.16 7.11 56.52 0.40 -4.76 15 20 H 0.06 0.72 8.14 -51.93 -0.42 0.29 15 21 H 0.06 0.69 8.08 -51.93 -0.42 0.27 15 22 H 0.06 0.73 8.08 -51.93 -0.42 0.31 15 23 H 0.11 1.70 8.06 -52.49 -0.42 1.28 15 24 H 0.11 2.22 8.06 -52.48 -0.42 1.80 15 25 H 0.11 2.12 8.06 -52.49 -0.42 1.69 15 26 H 0.37 7.10 9.06 45.56 0.41 7.52 15 27 H 0.28 6.97 8.31 -40.82 -0.34 6.63 15 LS Contribution 243.32 15.07 3.67 3.67 Total: -1.00 -31.00 243.32 -6.48 -37.49 By element: Atomic # 1 Polarization: 8.96 SS G_CDS: -1.67 Total: 7.29 kcal Atomic # 6 Polarization: -4.96 SS G_CDS: -3.56 Total: -8.52 kcal Atomic # 7 Polarization: -43.43 SS G_CDS: 0.30 Total: -43.13 kcal Atomic # 8 Polarization: -10.20 SS G_CDS: -0.19 Total: -10.40 kcal Atomic # 14 Polarization: 18.62 SS G_CDS: -5.03 Total: 13.59 kcal Total LS contribution 3.67 Total: 3.67 kcal Total: -31.00 -6.48 -37.49 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000108267629.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.503 kcal (2) G-P(sol) polarization free energy of solvation -31.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.498 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.489 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.014 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds